data_H5V
#

_chem_comp.id                                   H5V
_chem_comp.name                                 "7-(2-C-methyl-beta-D-ribofuranosyl)-7H-pyrrolo[2,3-d]pyrimidin-4-amine"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C12 H16 N4 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2018-06-11
_chem_comp.pdbx_modified_date                   2019-06-07
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       280.280
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    H5V
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6DO2
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
H5V  O3    O1   O  0  1  N  N  N  -32.143  -5.053  -41.447   3.532   2.035   0.205  O3    H5V   1  
H5V  O4    O2   O  0  1  N  N  N  -28.523  -6.633  -38.771   4.466  -2.185  -0.972  O4    H5V   2  
H5V  C9    C1   C  0  1  N  N  R  -30.761  -3.150  -40.693   1.307   1.075   0.533  C9    H5V   3  
H5V  C10   C2   C  0  1  N  N  R  -31.101  -3.329  -39.199   0.810   0.064  -0.523  C10   H5V   4  
H5V  C11   C3   C  0  1  N  N  R  -30.821  -4.626  -41.112   2.835   0.846   0.583  C11   H5V   5  
H5V  C12   C4   C  0  1  N  N  R  -30.273  -5.388  -39.851   3.079  -0.276  -0.450  C12   H5V   6  
H5V  C13   C5   C  0  1  N  N  N  -29.429  -2.489  -41.019   0.677   0.781   1.896  C13   H5V   7  
H5V  C14   C6   C  0  1  N  N  N  -28.870  -5.937  -39.963   4.174  -1.225   0.044  C14   H5V   8  
H5V  C15   C7   C  0  1  Y  N  N  -31.928  -1.618  -37.541  -1.698   0.087  -0.375  C15   H5V   9  
H5V  O1    O3   O  0  1  N  N  N  -30.323  -4.413  -38.771   1.817  -0.971  -0.545  O1    H5V  10  
H5V  O2    O4   O  0  1  N  N  N  -31.868  -2.409  -41.233   1.014   2.412   0.123  O2    H5V  11  
H5V  N5    N1   N  0  1  Y  N  N  -30.930  -2.230  -38.263  -0.485  -0.493  -0.126  N5    H5V  12  
H5V  N6    N2   N  0  1  Y  N  N  -33.233  -1.939  -37.556  -2.086   1.210  -0.978  N6    H5V  13  
H5V  N7    N3   N  0  1  Y  N  N  -33.565  -0.056  -36.095  -4.318   0.749  -0.580  N7    H5V  14  
H5V  N8    N4   N  0  1  N  N  N  -31.864   1.383  -35.489  -5.035  -1.189   0.558  N8    H5V  15  
H5V  C16   C8   C  0  1  Y  N  N  -29.739  -1.579  -37.978  -0.660  -1.673   0.550  C16   H5V  16  
H5V  C17   C9   C  0  1  Y  N  N  -31.354  -0.557  -36.826  -2.683  -0.760   0.165  C17   H5V  17  
H5V  C18   C10  C  0  1  Y  N  N  -29.955  -0.566  -37.113  -1.969  -1.890   0.757  C18   H5V  18  
H5V  C19   C11  C  0  1  Y  N  N  -32.251   0.254  -36.095  -4.031  -0.390   0.043  C19   H5V  19  
H5V  C20   C12  C  0  1  Y  N  N  -33.971  -1.099  -36.825  -3.362   1.520  -1.066  C20   H5V  20  
H5V  HO3   H1   H  0  1  N  N  N  -32.126  -5.969  -41.698   4.494   1.948   0.218  HO3   H5V  21  
H5V  HO4   H2   H  0  1  N  N  N  -27.640  -6.975  -38.849   5.153  -2.821  -0.728  HO4   H5V  22  
H5V  HC10  H3   H  0  0  N  N  N  -32.158  -3.632  -39.158   0.735   0.541  -1.500  HC10  H5V  23  
H5V  HC11  H4   H  0  0  N  N  N  -30.133  -4.793  -41.954   3.141   0.526   1.579  HC11  H5V  24  
H5V  HC12  H5   H  0  0  N  N  N  -30.961  -6.217  -39.629   3.353   0.149  -1.415  HC12  H5V  25  
H5V  H13A  H6   H  0  0  N  N  N  -28.609  -3.084  -40.590   0.950  -0.226   2.213  H13A  H5V  26  
H5V  H13C  H7   H  0  0  N  N  N  -29.307  -2.430  -42.111   1.038   1.503   2.628  H13C  H5V  27  
H5V  H13B  H8   H  0  0  N  N  N  -29.409  -1.475  -40.592  -0.408   0.855   1.818  H13B  H5V  28  
H5V  H14A  H9   H  0  0  N  N  N  -28.816  -6.628  -40.817   3.830  -1.739   0.942  H14A  H5V  29  
H5V  H14B  H10  H  0  0  N  N  N  -28.165  -5.107  -40.118   5.073  -0.654   0.274  H14B  H5V  30  
H5V  HO2   H11  H  0  1  N  N  N  -31.806  -1.502  -40.959   1.305   3.089   0.750  HO2   H5V  31  
H5V  HN8A  H12  H  0  0  N  N  N  -32.663   1.848  -35.107  -4.812  -2.018   1.010  HN8A  H5V  32  
H5V  HN8B  H13  H  0  0  N  N  N  -31.223   1.164  -34.753  -5.963  -0.922   0.467  HN8B  H5V  33  
H5V  HC16  H14  H  0  0  N  N  N  -28.776  -1.845  -38.389   0.137  -2.329   0.869  HC16  H5V  34  
H5V  HC18  H15  H  0  0  N  N  N  -29.212   0.109  -36.714  -2.409  -2.737   1.262  HC18  H5V  35  
H5V  HC20  H16  H  0  0  N  N  N  -35.034  -1.287  -36.824  -3.638   2.438  -1.562  HC20  H5V  36  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
H5V  O3   C11   SING  N  N   1  
H5V  O2   C9    SING  N  N   2  
H5V  C11  C9    SING  N  N   3  
H5V  C11  C12   SING  N  N   4  
H5V  C13  C9    SING  N  N   5  
H5V  C9   C10   SING  N  N   6  
H5V  C14  C12   SING  N  N   7  
H5V  C14  O4    SING  N  N   8  
H5V  C12  O1    SING  N  N   9  
H5V  C10  O1    SING  N  N  10  
H5V  C10  N5    SING  N  N  11  
H5V  N5   C16   SING  Y  N  12  
H5V  N5   C15   SING  Y  N  13  
H5V  C16  C18   DOUB  Y  N  14  
H5V  N6   C15   DOUB  Y  N  15  
H5V  N6   C20   SING  Y  N  16  
H5V  C15  C17   SING  Y  N  17  
H5V  C18  C17   SING  Y  N  18  
H5V  C17  C19   DOUB  Y  N  19  
H5V  C20  N7    DOUB  Y  N  20  
H5V  C19  N7    SING  Y  N  21  
H5V  C19  N8    SING  N  N  22  
H5V  O3   HO3   SING  N  N  23  
H5V  O4   HO4   SING  N  N  24  
H5V  C10  HC10  SING  N  N  25  
H5V  C11  HC11  SING  N  N  26  
H5V  C12  HC12  SING  N  N  27  
H5V  C13  H13A  SING  N  N  28  
H5V  C13  H13C  SING  N  N  29  
H5V  C13  H13B  SING  N  N  30  
H5V  C14  H14A  SING  N  N  31  
H5V  C14  H14B  SING  N  N  32  
H5V  O2   HO2   SING  N  N  33  
H5V  N8   HN8A  SING  N  N  34  
H5V  N8   HN8B  SING  N  N  35  
H5V  C16  HC16  SING  N  N  36  
H5V  C18  HC18  SING  N  N  37  
H5V  C20  HC20  SING  N  N  38  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
H5V  SMILES            ACDLabs               12.01  "OC1C(C(OC1CO)n3c2c(c(ncn2)N)cc3)(C)O"  
H5V  InChI             InChI                 1.03   "InChI=1S/C12H16N4O4/c1-12(19)8(18)7(4-17)20-11(12)16-3-2-6-9(13)14-5-15-10(6)16/h2-3,5,7-8,11,17-19H,4H2,1H3,(H2,13,14,15)/t7-,8-,11-,12-/m1/s1"  
H5V  InChIKey          InChI                 1.03   IRZRJANZDIOOIF-GAJNKVMBSA-N  
H5V  SMILES_CANONICAL  CACTVS                3.385  "C[C@@]1(O)[C@H](O)[C@@H](CO)O[C@H]1n2ccc3c(N)ncnc23"  
H5V  SMILES            CACTVS                3.385  "C[C]1(O)[CH](O)[CH](CO)O[CH]1n2ccc3c(N)ncnc23"  
H5V  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "C[C@]1([C@@H]([C@H](O[C@H]1n2ccc3c2ncnc3N)CO)O)O"  
H5V  SMILES            "OpenEye OEToolkits"  2.0.6  "CC1(C(C(OC1n2ccc3c2ncnc3N)CO)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
H5V  "SYSTEMATIC NAME"  ACDLabs               12.01  "7-(2-C-methyl-beta-D-ribofuranosyl)-7H-pyrrolo[2,3-d]pyrimidin-4-amine"  
H5V  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "(2~{R},3~{R},4~{R},5~{R})-2-(4-azanylpyrrolo[2,3-d]pyrimidin-7-yl)-5-(hydroxymethyl)-3-methyl-oxolane-3,4-diol"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
H5V  "Create component"  2018-06-11  RCSB  
H5V  "Initial release"   2019-06-12  RCSB  
##
