data_EQV
#

_chem_comp.id                                   EQV
_chem_comp.name                                 "Loganic acid"
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C16 H24 O10"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        
;(1S,4aS,6S,7R,7aS)-1-(beta-D-glucopyranosyloxy)-6-hydroxy-7-methyl-1,4a,5,6,7,7a-hexahydrocyclopenta[c]pyran-4-carboxyl
 ic acid
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2018-01-29
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       376.356
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    EQV
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6C8R
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     EQV
_pdbx_chem_comp_synonyms.name        
;(1S,4aS,6S,7R,7aS)-1-(beta-D-glucopyranosyloxy)-6-hydroxy-7-methyl-1,4a,5,6,7,7a-hexahydrocyclopenta[c]pyran-4-carboxyl
 ic acid
;

_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
EQV  C01  C01  C  0  1  N  N  N  12.898  9.311  -21.100   2.791   3.334   0.491  C01  EQV   1  
EQV  C02  C02  C  0  1  N  N  R  12.699  7.818  -21.345   2.826   1.917  -0.084  C02  EQV   2  
EQV  C03  C03  C  0  1  N  N  S  11.114  7.390  -21.011   4.234   1.316   0.077  C03  EQV   3  
EQV  C04  C04  C  0  1  N  N  N  10.801  6.276  -22.190   4.081   0.069   0.972  C04  EQV   4  
EQV  C3   C05  C  0  1  N  N  S  11.365  6.868  -23.284   2.599  -0.349   0.800  C3   EQV   5  
EQV  C2   C06  C  0  1  N  N  S  12.902  7.538  -22.673   1.867   1.005   0.702  C2   EQV   6  
EQV  C1   C07  C  0  1  N  N  S  13.904  6.642  -22.756   0.559   0.833  -0.066  C1   EQV   7  
EQV  O5   O08  O  0  1  N  N  N  14.165  6.181  -24.376   0.848   0.324  -1.396  O5   EQV   8  
EQV  C5   C09  C  0  1  N  N  N  12.984  5.555  -24.982   1.640  -0.760  -1.471  C5   EQV   9  
EQV  C4   C10  C  0  1  N  N  N  11.532  5.952  -24.436   2.467  -1.112  -0.485  C4   EQV  10  
EQV  C11  C11  C  0  1  N  N  N  10.378  5.513  -25.335   3.264  -2.269  -0.661  C11  EQV  11  
EQV  O12  O12  O  0  1  N  N  N   9.184  5.758  -24.995   3.183  -2.913  -1.691  O12  EQV  12  
EQV  O13  O13  O  0  1  N  N  N  10.661  4.893  -26.425   4.113  -2.658   0.312  O13  EQV  13  
EQV  O1   O14  O  0  1  N  N  N  15.100  7.200  -22.421  -0.282  -0.091   0.626  O1   EQV  14  
EQV  C15  C15  C  0  1  N  N  S  16.034  6.216  -22.240  -1.581  -0.240   0.049  C15  EQV  15  
EQV  C16  C16  C  0  1  N  N  R  17.361  6.913  -21.955  -2.348  -1.337   0.791  C16  EQV  16  
EQV  C17  C17  C  0  1  N  N  S  18.429  5.968  -21.487  -3.759  -1.449   0.207  C17  EQV  17  
EQV  C18  C18  C  0  1  N  N  S  17.981  4.972  -20.456  -4.451  -0.086   0.309  C18  EQV  18  
EQV  C19  C19  C  0  1  N  N  R  16.665  4.290  -20.826  -3.603   0.963  -0.415  C19  EQV  19  
EQV  O20  O20  O  0  1  N  N  N  15.621  5.327  -21.136  -2.294   0.994   0.157  O20  EQV  20  
EQV  C21  C21  C  0  1  N  N  N  16.191  3.412  -19.708  -4.258   2.339  -0.267  C21  EQV  21  
EQV  O22  O22  O  0  1  N  N  N  16.288  4.091  -18.466  -3.531   3.297  -1.038  O22  EQV  22  
EQV  O23  O23  O  0  1  N  N  N  19.003  3.956  -20.293  -5.742  -0.159  -0.299  O23  EQV  23  
EQV  O24  O24  O  0  1  N  N  N  19.528  6.768  -20.969  -4.506  -2.420   0.942  O24  EQV  24  
EQV  O25  O25  O  0  1  N  N  N  17.782  7.547  -23.169  -1.666  -2.584   0.636  O25  EQV  25  
EQV  O26  O26  O  0  1  N  N  N  10.350  8.328  -21.183   5.102   2.264   0.701  O26  EQV  26  
EQV  H1A  H1   H  0  1  N  N  N  13.940  9.584  -21.321   3.491   3.965  -0.056  H1A  EQV  27  
EQV  H2A  H2   H  0  1  N  N  N  12.223  9.883  -21.754   1.785   3.740   0.396  H2A  EQV  28  
EQV  H3A  H3   H  0  1  N  N  N  12.674  9.543  -20.048   3.073   3.306   1.544  H3A  EQV  29  
EQV  H4   H4   H  0  1  N  N  N  13.360  7.235  -20.686   2.546   1.934  -1.137  H4   EQV  30  
EQV  H5A  H5   H  0  1  N  N  N  11.075  6.899  -20.028   4.631   1.030  -0.897  H5A  EQV  31  
EQV  H6   H6   H  0  1  N  N  N  11.277  5.310  -21.966   4.743  -0.727   0.633  H6   EQV  32  
EQV  H7   H7   H  0  1  N  N  N   9.719  6.129  -22.326   4.287   0.320   2.013  H7   EQV  33  
EQV  H3   H8   H  0  1  N  N  N  10.770  7.736  -23.603   2.252  -0.940   1.647  H3   EQV  34  
EQV  H2   H10  H  0  1  N  N  N  13.105  8.447  -23.258   1.674   1.420   1.691  H2   EQV  35  
EQV  H1   H13  H  0  1  N  N  N  13.697  5.728  -22.181   0.054   1.795  -0.147  H1   EQV  36  
EQV  H5   H15  H  0  1  N  N  N  13.092  4.839  -25.783   1.605  -1.369  -2.362  H5   EQV  37  
EQV  H16  H16  H  0  1  N  N  N   9.858  4.675  -26.884   4.613  -3.458   0.101  H16  EQV  38  
EQV  H17  H17  H  0  1  N  N  N  16.147  5.619  -23.157  -1.483  -0.512  -1.002  H17  EQV  39  
EQV  H18  H18  H  0  1  N  N  N  17.195  7.673  -21.178  -2.411  -1.085   1.850  H18  EQV  40  
EQV  H19  H19  H  0  1  N  N  N  18.790  5.407  -22.362  -3.698  -1.749  -0.839  H19  EQV  41  
EQV  H20  H20  H  0  1  N  N  N  17.838  5.498  -19.501  -4.557   0.191   1.358  H20  EQV  42  
EQV  H21  H21  H  0  1  N  N  N  16.830  3.672  -21.721  -3.532   0.707  -1.472  H21  EQV  43  
EQV  H22  H22  H  0  1  N  N  N  15.142  3.133  -19.887  -5.287   2.291  -0.622  H22  EQV  44  
EQV  H23  H23  H  0  1  N  N  N  16.811  2.504  -19.673  -4.248   2.634   0.783  H23  EQV  45  
EQV  H24  H24  H  0  1  N  N  N  15.984  3.522  -17.769  -3.891   4.194  -0.991  H24  EQV  46  
EQV  H25  H25  H  0  1  N  N  N  18.722  3.325  -19.641  -6.332  -0.809   0.107  H25  EQV  47  
EQV  H26  H26  H  0  1  N  N  N  20.221  6.195  -20.664  -4.120  -3.307   0.926  H26  EQV  48  
EQV  H27  H27  H  0  1  N  N  N  18.609  7.992  -23.024  -0.763  -2.584   0.981  H27  EQV  49  
EQV  H28  H28  H  0  1  N  N  N   9.462  8.054  -20.986   6.005   1.944   0.831  H28  EQV  50  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
EQV  C01  C02  SING  N  N   1  
EQV  C02  C03  SING  N  N   2  
EQV  C02  C2   SING  N  N   3  
EQV  C03  C04  SING  N  N   4  
EQV  C03  O26  SING  N  N   5  
EQV  C04  C3   SING  N  N   6  
EQV  C3   C4   SING  N  N   7  
EQV  C2   C1   SING  N  N   8  
EQV  C1   O1   SING  N  N   9  
EQV  O5   C5   SING  N  N  10  
EQV  C5   C4   DOUB  N  N  11  
EQV  C4   C11  SING  N  N  12  
EQV  C11  O12  DOUB  N  N  13  
EQV  C11  O13  SING  N  N  14  
EQV  O1   C15  SING  N  N  15  
EQV  C15  C16  SING  N  N  16  
EQV  C15  O20  SING  N  N  17  
EQV  C16  C17  SING  N  N  18  
EQV  C16  O25  SING  N  N  19  
EQV  C17  C18  SING  N  N  20  
EQV  C17  O24  SING  N  N  21  
EQV  C18  C19  SING  N  N  22  
EQV  C18  O23  SING  N  N  23  
EQV  C19  O20  SING  N  N  24  
EQV  C19  C21  SING  N  N  25  
EQV  C21  O22  SING  N  N  26  
EQV  C01  H1A  SING  N  N  27  
EQV  C01  H2A  SING  N  N  28  
EQV  C01  H3A  SING  N  N  29  
EQV  C02  H4   SING  N  N  30  
EQV  C03  H5A  SING  N  N  31  
EQV  C04  H6   SING  N  N  32  
EQV  C04  H7   SING  N  N  33  
EQV  C3   H3   SING  N  N  34  
EQV  C2   H2   SING  N  N  35  
EQV  C2   C3   SING  N  N  36  
EQV  C1   O5   SING  N  N  37  
EQV  C1   H1   SING  N  N  38  
EQV  C5   H5   SING  N  N  39  
EQV  O13  H16  SING  N  N  40  
EQV  C15  H17  SING  N  N  41  
EQV  C16  H18  SING  N  N  42  
EQV  C17  H19  SING  N  N  43  
EQV  C18  H20  SING  N  N  44  
EQV  C19  H21  SING  N  N  45  
EQV  C21  H22  SING  N  N  46  
EQV  C21  H23  SING  N  N  47  
EQV  O22  H24  SING  N  N  48  
EQV  O23  H25  SING  N  N  49  
EQV  O24  H26  SING  N  N  50  
EQV  O25  H27  SING  N  N  51  
EQV  O26  H28  SING  N  N  52  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
EQV  SMILES            ACDLabs               12.01  "CC1C(CC2C(=COC(C12)OC3C(C(C(C(O3)CO)O)O)O)C(=O)O)O"  
EQV  InChI             InChI                 1.03   "InChI=1S/C16H24O10/c1-5-8(18)2-6-7(14(22)23)4-24-15(10(5)6)26-16-13(21)12(20)11(19)9(3-17)25-16/h4-6,8-13,15-21H,2-3H2,1H3,(H,22,23)/t5-,6+,8-,9+,10+,11+,12-,13+,15-,16-/m0/s1"  
EQV  InChIKey          InChI                 1.03   JNNGEAWILNVFFD-CDJYTOATSA-N  
EQV  SMILES_CANONICAL  CACTVS                3.385  "C[C@H]1[C@@H](O)C[C@H]2[C@@H]1[C@@H](OC=C2C(O)=O)O[C@@H]3O[C@H](CO)[C@@H](O)[C@H](O)[C@H]3O"  
EQV  SMILES            CACTVS                3.385  "C[CH]1[CH](O)C[CH]2[CH]1[CH](OC=C2C(O)=O)O[CH]3O[CH](CO)[CH](O)[CH](O)[CH]3O"  
EQV  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "C[C@H]1[C@H](C[C@H]2[C@@H]1[C@@H](OC=C2C(=O)O)O[C@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O)O)O)O"  
EQV  SMILES            "OpenEye OEToolkits"  2.0.6  "CC1C(CC2C1C(OC=C2C(=O)O)OC3C(C(C(C(O3)CO)O)O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
EQV  "SYSTEMATIC NAME"  ACDLabs               12.01  
;(1S,4aS,6S,7R,7aS)-1-(beta-D-glucopyranosyloxy)-6-hydroxy-7-methyl-1,4a,5,6,7,7a-hexahydrocyclopenta[c]pyran-4-carboxyl
ic acid
;
  
EQV  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  
;(1~{S},4~{a}~{S},6~{S},7~{R},7~{a}~{S})-1-[(2~{S},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2
-yl]oxy-7-methyl-6-oxidanyl-1,4~{a},5,6,7,7~{a}-hexahydrocyclopenta[c]pyran-4-carboxylic acid
;
  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
EQV  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
EQV  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
EQV  "CARBOHYDRATE ANOMER"                  beta      PDB  ?  
EQV  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
EQV  "Create component"          2018-01-29  RCSB  
EQV  "Initial release"           2018-02-07  RCSB  
EQV  "Other modification"        2020-07-03  RCSB  
EQV  "Modify synonyms"           2020-07-17  RCSB  
EQV  "Modify internal type"      2020-07-17  RCSB  
EQV  "Modify linking type"       2020-07-17  RCSB  
EQV  "Modify atom id"            2020-07-17  RCSB  
EQV  "Modify component atom id"  2020-07-17  RCSB  
##
