data_D9V
#

_chem_comp.id                                   D9V
_chem_comp.name                                 "(1S,2S,3S,4R,5R)-2-[(furan-2-ylmethyl)amino]-4-(piperidin-1-yl)-6,8-dioxabicyclo[3.2.1]octan-3-ol"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C16 H24 N2 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2017-10-23
_chem_comp.pdbx_modified_date                   2020-04-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       308.373
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    D9V
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5QBO
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
D9V  O3   O1   O  0  1  N  N  N  -13.096   2.565   3.195  -3.042  -1.013   1.677  O3   D9V   1  
D9V  C4   C1   C  0  1  N  N  N  -11.355  -0.807   1.260   1.397  -2.060   0.295  C4   D9V   2  
D9V  C5   C2   C  0  1  N  N  S  -12.409   1.483   1.197  -0.939  -1.490   0.580  C5   D9V   3  
D9V  C6   C3   C  0  1  N  N  S  -11.994   1.756  -0.281  -1.597  -1.791  -0.776  C6   D9V   4  
D9V  N1   N1   N  0  1  N  N  N  -13.194   5.323   1.658  -0.746   1.450   0.137  N1   D9V   5  
D9V  C7   C4   C  0  1  N  N  N  -13.181   1.720  -1.219  -3.113  -1.979  -0.532  C7   D9V   6  
D9V  C8   C5   C  0  1  N  N  R  -12.856   3.798  -0.309  -2.586   0.235  -0.944  C8   D9V   7  
D9V  C9   C6   C  0  1  N  N  R  -13.310   3.874   1.180  -2.017   0.756   0.385  C9   D9V   8  
D9V  C10  C7   C  0  1  N  N  S  -12.426   2.860   1.975  -1.785  -0.442   1.311  C10  D9V   9  
D9V  C11  C8   C  0  1  N  N  N  -11.781   5.796   1.855  -0.221   2.042   1.374  C11  D9V  10  
D9V  C12  C9   C  0  1  N  N  N  -11.743   7.297   2.036   1.169   2.628   1.110  C12  D9V  11  
D9V  C13  C10  C  0  1  N  N  N  -12.733   7.745   3.086   1.069   3.693   0.014  C13  D9V  12  
D9V  C14  C11  C  0  1  N  N  N  -13.297   6.553   3.827   0.474   3.061  -1.247  C14  D9V  13  
D9V  C15  C12  C  0  1  N  N  N  -14.009   5.601   2.891  -0.895   2.463  -0.915  C15  D9V  14  
D9V  O1   O2   O  0  1  N  N  N  -13.765   3.018  -1.063  -3.678  -0.664  -0.678  O1   D9V  15  
D9V  O2   O3   O  0  1  N  N  N  -11.608   3.141  -0.393  -1.535  -0.574  -1.561  O2   D9V  16  
D9V  N    N2   N  0  1  N  N  N  -11.436   0.562   1.861   0.417  -0.968   0.365  N    D9V  17  
D9V  C2   C13  C  0  1  Y  N  N  -12.661  -1.461   1.439   2.773  -1.487   0.074  C2   D9V  18  
D9V  C1   C14  C  0  1  Y  N  N  -13.642  -1.815   0.598   3.641  -1.131   1.039  C1   D9V  19  
D9V  O    O4   O  0  1  Y  N  N  -12.999  -1.808   2.719   3.344  -1.251  -1.118  O    D9V  20  
D9V  C3   C15  C  0  1  Y  N  N  -14.234  -2.400   2.643   4.572  -0.739  -0.934  C3   D9V  21  
D9V  C    C16  C  0  1  Y  N  N  -14.658  -2.426   1.386   4.799  -0.646   0.389  C    D9V  22  
D9V  H1   H1   H  0  1  N  N  N  -12.579   1.949   3.700  -2.970  -1.780   2.262  H1   D9V  23  
D9V  H2   H2   H  0  1  N  N  N  -10.573  -1.391   1.766   1.383  -2.622   1.229  H2   D9V  24  
D9V  H3   H3   H  0  1  N  N  N  -11.120  -0.731   0.188   1.143  -2.724  -0.532  H3   D9V  25  
D9V  H4   H4   H  0  1  N  N  N  -13.419   1.047   1.217  -0.890  -2.402   1.176  H4   D9V  26  
D9V  H5   H5   H  0  1  N  N  N  -11.201   1.065  -0.602  -1.143  -2.642  -1.282  H5   D9V  27  
D9V  H7   H7   H  0  1  N  N  N  -13.890   0.931  -0.927  -3.535  -2.658  -1.273  H7   D9V  28  
D9V  H8   H8   H  0  1  N  N  N  -12.858   1.556  -2.257  -3.290  -2.358   0.474  H8   D9V  29  
D9V  H9   H9   H  0  1  N  N  N  -12.789   4.819  -0.712  -2.874   1.055  -1.602  H9   D9V  30  
D9V  H10  H10  H  0  1  N  N  N  -14.361   3.555   1.247  -2.727   1.447   0.840  H10  D9V  31  
D9V  H11  H11  H  0  1  N  N  N  -11.406   3.246   2.117  -1.260  -0.112   2.208  H11  D9V  32  
D9V  H12  H12  H  0  1  N  N  N  -11.359   5.313   2.749  -0.890   2.834   1.711  H12  D9V  33  
D9V  H13  H13  H  0  1  N  N  N  -11.182   5.523   0.974  -0.151   1.274   2.144  H13  D9V  34  
D9V  H14  H14  H  0  1  N  N  N  -10.731   7.596   2.346   1.552   3.082   2.024  H14  D9V  35  
D9V  H15  H15  H  0  1  N  N  N  -11.991   7.780   1.079   1.843   1.835   0.787  H15  D9V  36  
D9V  H16  H16  H  0  1  N  N  N  -12.226   8.409   3.802   0.426   4.505   0.353  H16  D9V  37  
D9V  H17  H17  H  0  1  N  N  N  -13.555   8.290   2.599   2.063   4.082  -0.207  H17  D9V  38  
D9V  H18  H18  H  0  1  N  N  N  -14.010   6.909   4.585   0.361   3.824  -2.017  H18  D9V  39  
D9V  H19  H19  H  0  1  N  N  N  -12.473   6.018   4.322   1.137   2.275  -1.608  H19  D9V  40  
D9V  H20  H20  H  0  1  N  N  N  -14.969   6.047   2.591  -1.315   2.000  -1.808  H20  D9V  41  
D9V  H21  H21  H  0  1  N  N  N  -14.193   4.653   3.418  -1.562   3.252  -0.568  H21  D9V  42  
D9V  H22  H22  H  0  1  N  N  N  -10.528   0.979   1.809   0.456  -0.394  -0.463  H22  D9V  43  
D9V  H24  H24  H  0  1  N  N  N  -13.659  -1.666  -0.471   3.483  -1.201   2.105  H24  D9V  44  
D9V  H25  H25  H  0  1  N  N  N  -14.784  -2.790   3.487   5.261  -0.454  -1.715  H25  D9V  45  
D9V  H26  H26  H  0  1  N  N  N  -15.593  -2.832   1.030   5.696  -0.276   0.863  H26  D9V  46  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
D9V  C7   O1   SING  N  N   1  
D9V  C7   C6   SING  N  N   2  
D9V  O1   C8   SING  N  N   3  
D9V  O2   C8   SING  N  N   4  
D9V  O2   C6   SING  N  N   5  
D9V  C8   C9   SING  N  N   6  
D9V  C6   C5   SING  N  N   7  
D9V  C1   C    SING  Y  N   8  
D9V  C1   C2   DOUB  Y  N   9  
D9V  C9   N1   SING  N  N  10  
D9V  C9   C10  SING  N  N  11  
D9V  C5   N    SING  N  N  12  
D9V  C5   C10  SING  N  N  13  
D9V  C4   C2   SING  N  N  14  
D9V  C4   N    SING  N  N  15  
D9V  C    C3   DOUB  Y  N  16  
D9V  C2   O    SING  Y  N  17  
D9V  N1   C11  SING  N  N  18  
D9V  N1   C15  SING  N  N  19  
D9V  C11  C12  SING  N  N  20  
D9V  C10  O3   SING  N  N  21  
D9V  C12  C13  SING  N  N  22  
D9V  C3   O    SING  Y  N  23  
D9V  C15  C14  SING  N  N  24  
D9V  C13  C14  SING  N  N  25  
D9V  O3   H1   SING  N  N  26  
D9V  C4   H2   SING  N  N  27  
D9V  C4   H3   SING  N  N  28  
D9V  C5   H4   SING  N  N  29  
D9V  C6   H5   SING  N  N  30  
D9V  C7   H7   SING  N  N  31  
D9V  C7   H8   SING  N  N  32  
D9V  C8   H9   SING  N  N  33  
D9V  C9   H10  SING  N  N  34  
D9V  C10  H11  SING  N  N  35  
D9V  C11  H12  SING  N  N  36  
D9V  C11  H13  SING  N  N  37  
D9V  C12  H14  SING  N  N  38  
D9V  C12  H15  SING  N  N  39  
D9V  C13  H16  SING  N  N  40  
D9V  C13  H17  SING  N  N  41  
D9V  C14  H18  SING  N  N  42  
D9V  C14  H19  SING  N  N  43  
D9V  C15  H20  SING  N  N  44  
D9V  C15  H21  SING  N  N  45  
D9V  N    H22  SING  N  N  46  
D9V  C1   H24  SING  N  N  47  
D9V  C3   H25  SING  N  N  48  
D9V  C    H26  SING  N  N  49  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
D9V  SMILES            ACDLabs               12.01  "OC3C(NCc1occc1)C4COC(C3N2CCCCC2)O4"  
D9V  InChI             InChI                 1.03   "InChI=1S/C16H24N2O4/c19-15-13(17-9-11-5-4-8-20-11)12-10-21-16(22-12)14(15)18-6-2-1-3-7-18/h4-5,8,12-17,19H,1-3,6-7,9-10H2/t12-,13-,14-,15+,16-/m1/s1"  
D9V  InChIKey          InChI                 1.03   UGNVVIUBNSMYSH-DGXTUMSLSA-N  
D9V  SMILES_CANONICAL  CACTVS                3.385  "O[C@H]1[C@H](NCc2occc2)[C@H]3CO[C@H](O3)[C@@H]1N4CCCCC4"  
D9V  SMILES            CACTVS                3.385  "O[CH]1[CH](NCc2occc2)[CH]3CO[CH](O3)[CH]1N4CCCCC4"  
D9V  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "c1cc(oc1)CN[C@@H]2[C@H]3CO[C@H](O3)[C@@H]([C@H]2O)N4CCCCC4"  
D9V  SMILES            "OpenEye OEToolkits"  2.0.6  "c1cc(oc1)CNC2C3COC(O3)C(C2O)N4CCCCC4"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
D9V  "SYSTEMATIC NAME"  ACDLabs               12.01  "(1S,2S,3S,4R,5R)-2-[(furan-2-ylmethyl)amino]-4-(piperidin-1-yl)-6,8-dioxabicyclo[3.2.1]octan-3-ol (non-preferred name)"  
D9V  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "(1~{S},2~{S},3~{S},4~{R},5~{R})-2-(furan-2-ylmethylamino)-4-piperidin-1-yl-6,8-dioxabicyclo[3.2.1]octan-3-ol"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
D9V  "Create component"  2017-10-23  RCSB  
D9V  "Initial release"   2020-04-22  RCSB  
##
