data_AGV
# 
_chem_comp.id                                    AGV 
_chem_comp.name                                  "(2R,3R,4S)-1-[(4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-2-(hydroxymethyl)pyrrolidine-3,4-diol" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C12 H17 N5 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-12-06 
_chem_comp.pdbx_modified_date                    2013-08-02 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        279.295 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     AGV 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4I71 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
AGV "O5'" "O5'" O 0 1 N N N 5.581 22.070 17.897 -4.097 2.332  0.524  "O5'" AGV 1  
AGV "C5'" "C5'" C 0 1 N N N 5.485 20.652 18.045 -2.776 1.805  0.659  "C5'" AGV 2  
AGV "C4'" "C4'" C 0 1 N N R 6.690 19.970 18.675 -2.608 0.605  -0.276 "C4'" AGV 3  
AGV "C3'" "C3'" C 0 1 N N R 6.711 18.447 18.484 -3.665 -0.470 0.053  "C3'" AGV 4  
AGV "O3'" "O3'" O 0 1 N N N 8.017 17.985 18.143 -4.757 -0.402 -0.866 "O3'" AGV 5  
AGV "N4'" "N4'" N 0 1 N N N 6.777 20.099 20.180 -1.283 -0.008 -0.071 "N4'" AGV 6  
AGV "C1'" "C1'" C 0 1 N N N 5.944 18.983 20.726 -1.475 -1.400 0.391  "C1'" AGV 7  
AGV "C2'" "C2'" C 0 1 N N S 6.211 17.857 19.810 -2.881 -1.797 -0.123 "C2'" AGV 8  
AGV "O2'" "O2'" O 0 1 N N N 7.171 16.983 20.436 -2.834 -2.185 -1.497 "O2'" AGV 9  
AGV C7    C7    C 0 1 N N N 6.601 21.497 20.824 -0.489 0.762  0.895  C7    AGV 10 
AGV C9    C9    C 0 1 Y N N 5.217 21.744 21.347 0.914  0.214  0.944  C9    AGV 11 
AGV C8    C8    C 0 1 Y N N 4.258 22.483 20.696 1.413  -0.625 1.871  C8    AGV 12 
AGV N7    N7    N 0 1 Y N N 3.135 22.493 21.457 2.718  -0.904 1.590  N7    AGV 13 
AGV C5    C5    C 0 1 Y N N 3.329 21.762 22.612 3.102  -0.236 0.450  C5    AGV 14 
AGV C4    C4    C 0 1 Y N N 4.642 21.289 22.548 1.986  0.488  -0.007 C4    AGV 15 
AGV C6    C6    C 0 1 Y N N 2.499 21.439 23.694 4.289  -0.150 -0.285 C6    AGV 16 
AGV N6    N6    N 0 1 N N N 1.224 21.821 23.780 5.419  -0.846 0.112  N6    AGV 17 
AGV N1    N1    N 0 1 Y N N 3.038 20.684 24.679 4.310  0.613  -1.373 N1    AGV 18 
AGV C2    C2    C 0 1 Y N N 4.300 20.288 24.574 3.239  1.282  -1.764 C2    AGV 19 
AGV N3    N3    N 0 1 Y N N 5.141 20.555 23.557 2.097  1.223  -1.116 N3    AGV 20 
AGV H1    H1    H 0 1 N N N 4.786 22.402 17.497 -4.275 3.096  1.089  H1    AGV 21 
AGV H2    H2    H 0 1 N N N 4.608 20.437 18.673 -2.049 2.574  0.397  H2    AGV 22 
AGV H3    H3    H 0 1 N N N 5.335 20.218 17.046 -2.614 1.488  1.689  H3    AGV 23 
AGV H4    H4    H 0 1 N N N 7.604 20.390 18.230 -2.712 0.926  -1.313 H4    AGV 24 
AGV H5    H5    H 0 1 N N N 5.997 18.182 17.690 -4.016 -0.363 1.080  H5    AGV 25 
AGV H6    H6    H 0 1 N N N 8.001 17.042 18.031 -5.450 -1.057 -0.702 H6    AGV 26 
AGV H8    H8    H 0 1 N N N 4.877 19.250 20.716 -0.715 -2.051 -0.041 H8    AGV 27 
AGV H9    H9    H 0 1 N N N 6.250 18.733 21.753 -1.439 -1.446 1.479  H9    AGV 28 
AGV H10   H10   H 0 1 N N N 5.275 17.310 19.621 -3.312 -2.589 0.490  H10   AGV 29 
AGV H11   H11   H 0 1 N N N 6.812 16.648 21.249 -2.354 -3.009 -1.657 H11   AGV 30 
AGV H12   H12   H 0 1 N N N 7.310 21.587 21.660 -0.460 1.808  0.589  H12   AGV 31 
AGV H13   H13   H 0 1 N N N 6.828 22.261 20.066 -0.944 0.686  1.883  H13   AGV 32 
AGV H14   H14   H 0 1 N N N 4.378 22.973 19.741 0.862  -1.019 2.712  H14   AGV 33 
AGV H15   H15   H 0 1 N N N 2.286 22.964 21.215 3.290  -1.485 2.115  H15   AGV 34 
AGV H16   H16   H 0 1 N N N 0.825 21.465 24.625 5.392  -1.401 0.908  H16   AGV 35 
AGV H17   H17   H 0 1 N N N 1.175 22.820 23.783 6.237  -0.779 -0.405 H17   AGV 36 
AGV H18   H18   H 0 1 N N N 4.692 19.692 25.385 3.302  1.890  -2.655 H18   AGV 37 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
AGV "O5'" "C5'" SING N N 1  
AGV "C5'" "C4'" SING N N 2  
AGV "O3'" "C3'" SING N N 3  
AGV "C3'" "C4'" SING N N 4  
AGV "C3'" "C2'" SING N N 5  
AGV "C4'" "N4'" SING N N 6  
AGV "C2'" "O2'" SING N N 7  
AGV "C2'" "C1'" SING N N 8  
AGV "N4'" "C1'" SING N N 9  
AGV "N4'" C7    SING N N 10 
AGV C8    C9    DOUB Y N 11 
AGV C8    N7    SING Y N 12 
AGV C7    C9    SING N N 13 
AGV C9    C4    SING Y N 14 
AGV N7    C5    SING Y N 15 
AGV C4    C5    SING Y N 16 
AGV C4    N3    DOUB Y N 17 
AGV C5    C6    DOUB Y N 18 
AGV N3    C2    SING Y N 19 
AGV C6    N6    SING N N 20 
AGV C6    N1    SING Y N 21 
AGV C2    N1    DOUB Y N 22 
AGV "O5'" H1    SING N N 23 
AGV "C5'" H2    SING N N 24 
AGV "C5'" H3    SING N N 25 
AGV "C4'" H4    SING N N 26 
AGV "C3'" H5    SING N N 27 
AGV "O3'" H6    SING N N 28 
AGV "C1'" H8    SING N N 29 
AGV "C1'" H9    SING N N 30 
AGV "C2'" H10   SING N N 31 
AGV "O2'" H11   SING N N 32 
AGV C7    H12   SING N N 33 
AGV C7    H13   SING N N 34 
AGV C8    H14   SING N N 35 
AGV N7    H15   SING N N 36 
AGV N6    H16   SING N N 37 
AGV N6    H17   SING N N 38 
AGV C2    H18   SING N N 39 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
AGV SMILES           ACDLabs              12.01 "OCC3N(Cc2cnc1c2ncnc1N)CC(O)C3O"                                                                                                              
AGV InChI            InChI                1.03  "InChI=1S/C12H17N5O3/c13-12-10-9(15-5-16-12)6(1-14-10)2-17-3-8(19)11(20)7(17)4-18/h1,5,7-8,11,14,18-20H,2-4H2,(H2,13,15,16)/t7-,8+,11-/m1/s1" 
AGV InChIKey         InChI                1.03  RCLRGJMFVIDWTM-VHSKPIJISA-N                                                                                                                   
AGV SMILES_CANONICAL CACTVS               3.370 "Nc1ncnc2c(CN3C[C@H](O)[C@H](O)[C@H]3CO)c[nH]c12"                                                                                             
AGV SMILES           CACTVS               3.370 "Nc1ncnc2c(CN3C[CH](O)[CH](O)[CH]3CO)c[nH]c12"                                                                                                
AGV SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1c(c2c([nH]1)c(ncn2)N)CN3C[C@@H]([C@@H]([C@H]3CO)O)O"                                                                                       
AGV SMILES           "OpenEye OEToolkits" 1.7.6 "c1c(c2c([nH]1)c(ncn2)N)CN3CC(C(C3CO)O)O"                                                                                                     
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
AGV "SYSTEMATIC NAME" ACDLabs              12.01 "(2R,3R,4S)-1-[(4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-2-(hydroxymethyl)pyrrolidine-3,4-diol"  
AGV "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2R,3R,4S)-1-[(4-azanyl-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-2-(hydroxymethyl)pyrrolidine-3,4-diol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
AGV "Create component" 2012-12-06 PDBJ 
AGV "Initial release"  2013-08-07 RCSB 
# 
