data_A1ILV
# 
_chem_comp.id                                    A1ILV 
_chem_comp.name                                  "~{N}-[4-[(1~{R},3~{R})-3-azanylcyclopentyl]oxyphenyl]-~{N}-[(1~{S})-1-(4-chlorophenyl)-3-methyl-3-oxidanyl-butyl]propanamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H33 Cl N2 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2024-08-20 
_chem_comp.pdbx_modified_date                    2024-12-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        444.994 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1ILV 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        9GIQ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1ILV C1   C1  C  0 1 N N N N N N 19.299 -3.797 16.511 -3.535 2.314  -3.158 C1   A1ILV 1  
A1ILV C2   C2  C  0 1 N N N N N N 17.793 -3.641 16.695 -3.506 1.877  -1.692 C2   A1ILV 2  
A1ILV C3   C3  C  0 1 N N N N N N 17.062 -4.953 16.448 -4.932 1.845  -1.140 C3   A1ILV 3  
A1ILV C7   C4  C  0 1 Y N N N N N 15.358 -3.447 13.706 -1.118 -1.732 -0.550 C7   A1ILV 4  
A1ILV C8   C5  C  0 1 Y N N N N N 14.532 -4.124 12.826 -0.695 -3.045 -0.463 C8   A1ILV 5  
A1ILV C9   C6  C  0 1 Y N N N N N 15.044 -4.548 11.621 -1.500 -3.991 0.147  C9   A1ILV 6  
A1ILV C10  C7  C  0 1 Y N N N N N 16.357 -4.309 11.276 -2.726 -3.622 0.669  C10  A1ILV 7  
A1ILV C11  C8  C  0 1 Y N N N N N 17.173 -3.631 12.166 -3.148 -2.309 0.582  C11  A1ILV 8  
A1ILV C14  C9  C  0 1 Y N N N N N 16.596 -0.218 13.769 -0.501 0.952  0.183  C14  A1ILV 9  
A1ILV C15  C10 C  0 1 Y N N N N N 15.899 -0.246 12.563 -0.131 1.574  -1.002 C15  A1ILV 10 
A1ILV C16  C11 C  0 1 Y N N N N N 14.777 0.543  12.388 1.194  1.590  -1.389 C16  A1ILV 11 
A1ILV C19  C12 C  0 1 Y N N N N N 16.154 0.609  14.795 0.464  0.351  0.981  C19  A1ILV 12 
A1ILV C21  C13 C  0 1 N N R N N N 12.741 3.087  14.103 4.379  0.248  -0.180 C21  A1ILV 13 
A1ILV C22  C14 C  0 1 N N N N N N 11.494 3.676  13.478 4.939  1.130  0.956  C22  A1ILV 14 
A1ILV C24  C15 C  0 1 N N R N N N 13.212 5.360  13.313 6.833  0.445  -0.386 C24  A1ILV 15 
A1ILV N26  N1  N  0 1 N N N N N N 12.761 6.565  14.082 7.972  -0.481 -0.452 N26  A1ILV 16 
A1ILV C27  C16 C  0 1 N N N N N N 19.019 -0.571 13.697 -2.260 1.717  1.594  C27  A1ILV 17 
A1ILV O28  O1  O  0 1 N N N N N N 19.997 -1.310 13.757 -3.403 1.640  1.991  O28  A1ILV 18 
A1ILV C30  C17 C  0 1 N N N N N N 20.101 1.179  12.151 -1.989 3.374  3.419  C30  A1ILV 19 
A1ILV C4   C18 C  0 1 N N N N N N 17.220 -2.512 15.851 -2.888 0.481  -1.588 C4   A1ILV 20 
A1ILV C5   C19 C  0 1 N N S N N N 17.585 -2.443 14.355 -2.801 0.069  -0.117 C5   A1ILV 21 
A1ILV C6   C20 C  0 1 Y N N N N N 16.687 -3.192 13.392 -2.341 -1.363 -0.023 C6   A1ILV 22 
A1ILV CL12 CL1 CL 0 0 N N N N N N 14.012 -5.402 10.509 -0.970 -5.641 0.256  CL12 A1ILV 23 
A1ILV N13  N2  N  0 1 N N N N N N 17.756 -1.035 13.950 -1.845 0.936  0.577  N13  A1ILV 24 
A1ILV C17  C21 C  0 1 Y N N N N N 14.346 1.368  13.417 2.156  0.984  -0.594 C17  A1ILV 25 
A1ILV C18  C22 C  0 1 Y N N N N N 15.033 1.400  14.622 1.789  0.368  0.593  C18  A1ILV 26 
A1ILV O20  O2  O  0 1 N N N N N N 13.220 2.108  13.128 3.461  0.999  -0.977 O20  A1ILV 27 
A1ILV C23  C23 C  0 1 N N N N N N 12.078 4.732  12.529 6.417  0.688  1.087  C23  A1ILV 28 
A1ILV C25  C24 C  0 1 N N N N N N 13.723 4.253  14.253 5.584  -0.187 -1.032 C25  A1ILV 29 
A1ILV C29  C25 C  0 1 N N N N N N 19.172 0.899  13.337 -1.302 2.687  2.237  C29  A1ILV 30 
A1ILV O31  O3  O  0 1 N N N N N N 17.551 -3.232 18.052 -2.722 2.801  -0.934 O31  A1ILV 31 
A1ILV H1   H1  H  0 1 N N N N N N 19.662 -4.623 17.140 -2.518 2.337  -3.550 H1   A1ILV 32 
A1ILV H2   H2  H  0 1 N N N N N N 19.519 -4.016 15.456 -4.132 1.609  -3.735 H2   A1ILV 33 
A1ILV H3   H3  H  0 1 N N N N N N 19.803 -2.864 16.804 -3.975 3.309  -3.231 H3   A1ILV 34 
A1ILV H4   H4  H  0 1 N N N N N N 17.503 -5.743 17.074 -5.542 1.177  -1.748 H4   A1ILV 35 
A1ILV H5   H5  H  0 1 N N N N N N 15.999 -4.834 16.704 -4.916 1.487  -0.111 H5   A1ILV 36 
A1ILV H6   H6  H  0 1 N N N N N N 17.155 -5.231 15.388 -5.355 2.850  -1.169 H6   A1ILV 37 
A1ILV H7   H7  H  0 1 N N N N N N 14.963 -3.111 14.653 -0.490 -0.993 -1.025 H7   A1ILV 38 
A1ILV H8   H8  H  0 1 N N N N N N 13.500 -4.317 13.081 0.262  -3.332 -0.871 H8   A1ILV 39 
A1ILV H9   H9  H  0 1 N N N N N N 16.744 -4.646 10.325 -3.355 -4.361 1.145  H9   A1ILV 40 
A1ILV H10  H10 H  0 1 N N N N N N 18.203 -3.440 11.903 -4.106 -2.021 0.989  H10  A1ILV 41 
A1ILV H11  H11 H  0 1 N N N N N N 16.236 -0.887 11.762 -0.881 2.045  -1.621 H11  A1ILV 42 
A1ILV H12  H12 H  0 1 N N N N N N 14.238 0.517  11.453 1.482  2.074  -2.311 H12  A1ILV 43 
A1ILV H13  H13 H  0 1 N N N N N N 16.689 0.634  15.733 0.178  -0.129 1.905  H13  A1ILV 44 
A1ILV H14  H14 H  0 1 N N N N N N 12.521 2.627  15.078 3.882  -0.627 0.238  H14  A1ILV 45 
A1ILV H15  H15 H  0 1 N N N N N N 10.846 4.137  14.238 4.878  2.184  0.685  H15  A1ILV 46 
A1ILV H16  H16 H  0 1 N N N N N N 10.926 2.913  12.925 4.399  0.944  1.884  H16  A1ILV 47 
A1ILV H17  H17 H  0 1 N N N N N N 14.019 5.645  12.622 7.080  1.388  -0.874 H17  A1ILV 48 
A1ILV H18  H18 H  0 1 N N N N N N 13.535 6.949  14.584 8.794  -0.075 -0.031 H18  A1ILV 49 
A1ILV H19  H19 H  0 1 N N N N N N 12.402 7.250  13.448 7.744  -1.365 -0.022 H19  A1ILV 50 
A1ILV H21  H21 H  0 1 N N N N N N 20.147 2.263  11.969 -1.296 4.075  3.884  H21  A1ILV 51 
A1ILV H22  H22 H  0 1 N N N N N N 21.109 0.802  12.378 -2.869 3.912  3.066  H22  A1ILV 52 
A1ILV H23  H23 H  0 1 N N N N N N 19.714 0.672  11.255 -2.291 2.623  4.149  H23  A1ILV 53 
A1ILV H24  H24 H  0 1 N N N N N N 17.550 -1.567 16.308 -3.510 -0.233 -2.129 H24  A1ILV 54 
A1ILV H25  H25 H  0 1 N N N N N N 16.124 -2.586 15.913 -1.888 0.493  -2.022 H25  A1ILV 55 
A1ILV H26  H26 H  0 1 N N N N N N 18.576 -2.912 14.270 -3.783 0.167  0.346  H26  A1ILV 56 
A1ILV H27  H27 H  0 1 N N N N N N 14.693 2.041  15.422 2.538  -0.104 1.211  H27  A1ILV 57 
A1ILV H28  H28 H  0 1 N N N N N N 11.319 5.486  12.271 7.019  1.480  1.533  H28  A1ILV 58 
A1ILV H29  H29 H  0 1 N N N N N N 12.455 4.262  11.609 6.496  -0.232 1.667  H29  A1ILV 59 
A1ILV H30  H30 H  0 1 N N N N N N 14.736 3.940  13.960 5.671  -1.273 -1.029 H30  A1ILV 60 
A1ILV H31  H31 H  0 1 N N N N N N 13.736 4.610  15.293 5.469  0.175  -2.054 H31  A1ILV 61 
A1ILV H32  H32 H  0 1 N N N N N N 19.571 1.426  14.216 -0.423 2.149  2.590  H32  A1ILV 62 
A1ILV H33  H33 H  0 1 N N N N N N 18.176 1.296  13.092 -1.000 3.438  1.506  H33  A1ILV 63 
A1ILV H34  H34 H  0 1 N N N N N N 17.885 -3.893 18.647 -3.056 3.709  -0.955 H34  A1ILV 64 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1ILV CL12 C9  SING N N 1  
A1ILV C10  C9  DOUB Y N 2  
A1ILV C10  C11 SING Y N 3  
A1ILV C9   C8  SING Y N 4  
A1ILV C30  C29 SING N N 5  
A1ILV C11  C6  DOUB Y N 6  
A1ILV C16  C15 DOUB Y N 7  
A1ILV C16  C17 SING Y N 8  
A1ILV C23  C24 SING N N 9  
A1ILV C23  C22 SING N N 10 
A1ILV C15  C14 SING Y N 11 
A1ILV C8   C7  DOUB Y N 12 
A1ILV O20  C17 SING N N 13 
A1ILV O20  C21 SING N N 14 
A1ILV C24  N26 SING N N 15 
A1ILV C24  C25 SING N N 16 
A1ILV C29  C27 SING N N 17 
A1ILV C6   C7  SING Y N 18 
A1ILV C6   C5  SING N N 19 
A1ILV C17  C18 DOUB Y N 20 
A1ILV C22  C21 SING N N 21 
A1ILV C27  O28 DOUB N N 22 
A1ILV C27  N13 SING N N 23 
A1ILV C14  N13 SING N N 24 
A1ILV C14  C19 DOUB Y N 25 
A1ILV N13  C5  SING N N 26 
A1ILV C21  C25 SING N N 27 
A1ILV C5   C4  SING N N 28 
A1ILV C18  C19 SING Y N 29 
A1ILV C4   C2  SING N N 30 
A1ILV C3   C2  SING N N 31 
A1ILV C1   C2  SING N N 32 
A1ILV C2   O31 SING N N 33 
A1ILV C1   H1  SING N N 34 
A1ILV C1   H2  SING N N 35 
A1ILV C1   H3  SING N N 36 
A1ILV C3   H4  SING N N 37 
A1ILV C3   H5  SING N N 38 
A1ILV C3   H6  SING N N 39 
A1ILV C7   H7  SING N N 40 
A1ILV C8   H8  SING N N 41 
A1ILV C10  H9  SING N N 42 
A1ILV C11  H10 SING N N 43 
A1ILV C15  H11 SING N N 44 
A1ILV C16  H12 SING N N 45 
A1ILV C19  H13 SING N N 46 
A1ILV C21  H14 SING N N 47 
A1ILV C22  H15 SING N N 48 
A1ILV C22  H16 SING N N 49 
A1ILV C24  H17 SING N N 50 
A1ILV N26  H18 SING N N 51 
A1ILV N26  H19 SING N N 52 
A1ILV C30  H21 SING N N 53 
A1ILV C30  H22 SING N N 54 
A1ILV C30  H23 SING N N 55 
A1ILV C4   H24 SING N N 56 
A1ILV C4   H25 SING N N 57 
A1ILV C5   H26 SING N N 58 
A1ILV C18  H27 SING N N 59 
A1ILV C23  H28 SING N N 60 
A1ILV C23  H29 SING N N 61 
A1ILV C25  H30 SING N N 62 
A1ILV C25  H31 SING N N 63 
A1ILV C29  H32 SING N N 64 
A1ILV C29  H33 SING N N 65 
A1ILV O31  H34 SING N N 66 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1ILV InChI            InChI                1.06  "InChI=1S/C25H33ClN2O3/c1-4-24(29)28(23(16-25(2,3)30)17-5-7-18(26)8-6-17)20-10-13-21(14-11-20)31-22-12-9-19(27)15-22/h5-8,10-11,13-14,19,22-23,30H,4,9,12,15-16,27H2,1-3H3/t19-,22-,23+/m1/s1" 
A1ILV InChIKey         InChI                1.06  KGKDJAZMGJFCBA-PTUXOGIPSA-N                                                                                                                                                                    
A1ILV SMILES_CANONICAL CACTVS               3.385 "CCC(=O)N([C@@H](CC(C)(C)O)c1ccc(Cl)cc1)c2ccc(O[C@@H]3CC[C@@H](N)C3)cc2"                                                                                                                       
A1ILV SMILES           CACTVS               3.385 "CCC(=O)N([CH](CC(C)(C)O)c1ccc(Cl)cc1)c2ccc(O[CH]3CC[CH](N)C3)cc2"                                                                                                                             
A1ILV SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC(=O)N(c1ccc(cc1)O[C@@H]2CC[C@H](C2)N)[C@@H](CC(C)(C)O)c3ccc(cc3)Cl"                                                                                                                        
A1ILV SMILES           "OpenEye OEToolkits" 2.0.7 "CCC(=O)N(c1ccc(cc1)OC2CCC(C2)N)C(CC(C)(C)O)c3ccc(cc3)Cl"                                                                                                                                      
# 
_pdbx_chem_comp_identifier.comp_id           A1ILV 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "~{N}-[4-[(1~{R},3~{R})-3-azanylcyclopentyl]oxyphenyl]-~{N}-[(1~{S})-1-(4-chlorophenyl)-3-methyl-3-oxidanyl-butyl]propanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1ILV "Create component" 2024-08-20 PDBE 
A1ILV "Modify PCM"       2024-09-27 PDBE 
A1ILV "Initial release"  2024-12-18 RCSB 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            A1ILV 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C30 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
