data_9QV
# 
_chem_comp.id                                    9QV 
_chem_comp.name                                  
;uridine 2',5'-bis(dihydrogen phosphate)
;
_chem_comp.type                                  "RNA linking" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C9 H14 N2 O12 P2" 
_chem_comp.mon_nstd_parent_comp_id               U 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-05-31 
_chem_comp.pdbx_modified_date                    2018-05-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        404.161 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     9QV 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5VSU 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
9QV "O5'" O1  O 0 1 N N N 23.539 -7.362  -21.222 -3.678 -0.191 -0.496 "O5'" 9QV 1  
9QV "C5'" C1  C 0 1 N N N 24.514 -7.718  -22.179 -2.700 -0.815 0.338  "C5'" 9QV 2  
9QV "C4'" C2  C 0 1 N N R 24.073 -8.929  -22.946 -1.372 -0.910 -0.416 "C4'" 9QV 3  
9QV "O4'" O2  O 0 1 N N N 24.627 -8.898  -24.277 -0.795 0.404  -0.584 "O4'" 9QV 4  
9QV "C1'" C3  C 0 1 N N R 24.882 -10.207 -24.707 0.609  0.173  -0.831 "C1'" 9QV 5  
9QV N1    N1  N 0 1 N N N 26.329 -10.304 -24.891 1.383  1.382  -0.537 N1    9QV 6  
9QV C6    C4  C 0 1 N N N 27.121 -10.652 -23.834 2.224  1.895  -1.486 C6    9QV 7  
9QV C5    C5  C 0 1 N N N 28.438 -10.746 -23.974 2.938  3.009  -1.215 C5    9QV 8  
9QV C4    C6  C 0 1 N N N 29.042 -10.486 -25.249 2.799  3.625  0.052  C4    9QV 9  
9QV O4    O3  O 0 1 N N N 30.254 -10.546 -25.481 3.432  4.630  0.319  O4    9QV 10 
9QV N3    N2  N 0 1 N N N 28.162 -10.137 -26.260 1.960  3.087  0.960  N3    9QV 11 
9QV C2    C7  C 0 1 N N N 26.800 -10.030 -26.151 1.257  1.979  0.662  C2    9QV 12 
9QV O2    O4  O 0 1 N N N 26.065 -9.706  -27.074 0.503  1.506  1.491  O2    9QV 13 
9QV "C2'" C8  C 0 1 N N R 24.402 -11.157 -23.608 0.999  -0.964 0.139  "C2'" 9QV 14 
9QV "O2'" O5  O 0 1 N N N 23.034 -11.457 -23.828 1.934  -1.851 -0.479 "O2'" 9QV 15 
9QV P     P1  P 0 1 N N N 23.358 -5.851  -20.817 -5.195 0.072  -0.023 P     9QV 16 
9QV O3P   O6  O 0 1 N N N 22.697 -13.482 -22.145 4.133  -3.264 -0.761 O1P   9QV 17 
9QV O2P   O7  O 0 1 N N N 20.977 -13.168 -23.665 4.271  -0.762 0.037  O2P   9QV 18 
9QV O1P   O8  O 0 1 N N N 23.034 -14.083 -24.279 3.303  -2.563 1.518  O3P   9QV 19 
9QV "C3'" C9  C 0 1 N N R 24.512 -10.268 -22.396 -0.335 -1.693 0.418  "C3'" 9QV 20 
9QV "O3'" O9  O 0 1 N N N 23.684 -10.701 -21.341 -0.264 -3.052 -0.019 "O3'" 9QV 21 
9QV P1    P2  P 0 1 N N N 22.472 -12.910 -23.513 3.408  -2.120 0.110  P1    9QV 22 
9QV OP1   O10 O 0 1 N N N 24.744 -5.326  -20.991 -5.801 -1.202 0.422  OP1   9QV 23 
9QV OP2   O11 O 0 1 N N N 22.178 -5.441  -21.612 -5.202 1.125  1.195  OP2   9QV 24 
9QV H1    H1  H 0 1 N N N 25.462 -7.939  -21.666 -2.563 -0.223 1.243  H1    9QV 25 
9QV H2    H2  H 0 1 N N N 24.661 -6.880  -22.877 -3.038 -1.816 0.606  H2    9QV 26 
9QV H3    H3  H 0 1 N N N 22.975 -8.923  -23.009 -1.520 -1.388 -1.385 H3    9QV 27 
9QV H4    H4  H 0 1 N N N 24.356 -10.433 -25.647 0.767  -0.138 -1.863 H4    9QV 28 
9QV H5    H5  H 0 1 N N N 26.671 -10.853 -22.873 2.318  1.412  -2.447 H5    9QV 29 
9QV H6    H6  H 0 1 N N N 29.054 -11.018 -23.129 3.606  3.425  -1.955 H6    9QV 30 
9QV H7    H7  H 0 1 N N N 28.559 -9.944  -27.157 1.856  3.506  1.829  H7    9QV 31 
9QV H8    H8  H 0 1 N N N 25.042 -12.048 -23.529 1.411  -0.556 1.061  H8    9QV 32 
9QV H9    H9  H 0 1 N N N 23.095 -14.341 -22.222 5.027  -3.478 -0.461 H9    9QV 33 
9QV H10   H10 H 0 1 N N N 20.842 -13.958 -24.175 4.380  -0.414 -0.858 H10   9QV 34 
9QV H11   H11 H 0 1 N N N 25.563 -10.208 -22.075 -0.582 -1.645 1.478  H11   9QV 35 
9QV H12   H12 H 0 1 N N N 23.783 -10.116 -20.599 -1.093 -3.540 0.077  H12   9QV 36 
9QV H14   H14 H 0 1 N N N 22.438 -4.790  -22.253 -4.819 1.985  0.974  H14   9QV 37 
9QV OP3   OP3 O 0 1 N Y N 22.926 -5.875  -19.261 -6.045 0.669  -1.253 OP3   9QV 38 
9QV H16   H16 H 0 1 N Y N 23.641 -5.546  -18.728 -6.970 0.853  -1.040 H16   9QV 39 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
9QV O2    C2    DOUB N N 1  
9QV N3    C2    SING N N 2  
9QV N3    C4    SING N N 3  
9QV C2    N1    SING N N 4  
9QV O4    C4    DOUB N N 5  
9QV C4    C5    SING N N 6  
9QV N1    "C1'" SING N N 7  
9QV N1    C6    SING N N 8  
9QV "C1'" "O4'" SING N N 9  
9QV "C1'" "C2'" SING N N 10 
9QV O1P   P1    DOUB N N 11 
9QV "O4'" "C4'" SING N N 12 
9QV C5    C6    DOUB N N 13 
9QV "O2'" "C2'" SING N N 14 
9QV "O2'" P1    SING N N 15 
9QV O2P   P1    SING N N 16 
9QV "C2'" "C3'" SING N N 17 
9QV P1    O3P   SING N N 18 
9QV "C4'" "C3'" SING N N 19 
9QV "C4'" "C5'" SING N N 20 
9QV "C3'" "O3'" SING N N 21 
9QV "C5'" "O5'" SING N N 22 
9QV OP2   P     SING N N 23 
9QV "O5'" P     SING N N 24 
9QV OP1   P     DOUB N N 25 
9QV "C5'" H1    SING N N 26 
9QV "C5'" H2    SING N N 27 
9QV "C4'" H3    SING N N 28 
9QV "C1'" H4    SING N N 29 
9QV C6    H5    SING N N 30 
9QV C5    H6    SING N N 31 
9QV N3    H7    SING N N 32 
9QV "C2'" H8    SING N N 33 
9QV O3P   H9    SING N N 34 
9QV O2P   H10   SING N N 35 
9QV "C3'" H11   SING N N 36 
9QV "O3'" H12   SING N N 37 
9QV OP2   H14   SING N N 38 
9QV P     OP3   SING N N 39 
9QV OP3   H16   SING N N 40 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
9QV SMILES           ACDLabs              12.01 "O(P(O)(=O)O)CC1C(C(C(O1)N2C=CC(=O)NC2=O)OP(O)(O)=O)O"                                                                                                                      
9QV InChI            InChI                1.03  "InChI=1S/C9H14N2O12P2/c12-5-1-2-11(9(14)10-5)8-7(23-25(18,19)20)6(13)4(22-8)3-21-24(15,16)17/h1-2,4,6-8,13H,3H2,(H,10,12,14)(H2,15,16,17)(H2,18,19,20)/t4-,6-,7-,8-/m1/s1" 
9QV InChIKey         InChI                1.03  HQYLGYLPRPXVMN-XVFCMESISA-N                                                                                                                                                 
9QV SMILES_CANONICAL CACTVS               3.385 "O[C@@H]1[C@@H](CO[P](O)(O)=O)O[C@H]([C@@H]1O[P](O)(O)=O)N2C=CC(=O)NC2=O"                                                                                                   
9QV SMILES           CACTVS               3.385 "O[CH]1[CH](CO[P](O)(O)=O)O[CH]([CH]1O[P](O)(O)=O)N2C=CC(=O)NC2=O"                                                                                                          
9QV SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)OP(=O)(O)O"                                                                                                    
9QV SMILES           "OpenEye OEToolkits" 2.0.6 "C1=CN(C(=O)NC1=O)C2C(C(C(O2)COP(=O)(O)O)O)OP(=O)(O)O"                                                                                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
9QV "SYSTEMATIC NAME" ACDLabs              12.01 
;uridine 2',5'-bis(dihydrogen phosphate)
;
9QV "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "[(2~{R},3~{R},4~{R},5~{R})-2-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-4-oxidanyl-5-(phosphonooxymethyl)oxolan-3-yl] dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
9QV "Create component" 2017-05-31 RCSB 
9QV "Initial release"  2018-05-09 RCSB 
# 
