data_9KV
# 
_chem_comp.id                                    9KV 
_chem_comp.name                                  "(2S)-N,2-dicyclohexyl-2-[2-(5-phenylthiophen-2-yl)-1H-benzimidazol-1-yl]acetamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C31 H35 N3 O S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-05-19 
_chem_comp.pdbx_modified_date                    2017-06-30 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        497.694 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     9KV 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5Q0J 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
9KV N3  N1  N 0 1 Y N N 13.076 25.926 2.307  -2.967 -1.663 -1.750 N3  9KV 1  
9KV C4  C1  C 0 1 Y N N 15.136 24.676 2.805  -0.568 -1.588 -1.155 C4  9KV 2  
9KV C5  C2  C 0 1 N N N 12.639 21.904 4.403  -0.447 1.267  -0.119 C5  9KV 3  
9KV C7  C3  C 0 1 N N S 13.367 23.219 4.733  -1.625 0.699  0.630  C7  9KV 4  
9KV C8  C4  C 0 1 Y N N 11.650 24.883 3.762  -3.790 -0.027 -0.488 C8  9KV 5  
9KV C10 C5  C 0 1 Y N N 11.768 25.872 2.801  -4.115 -1.017 -1.434 C10 9KV 6  
9KV C15 C6  C 0 1 Y N N 18.532 22.991 1.651  3.314  -2.213 -0.582 C15 9KV 7  
9KV C17 C7  C 0 1 N N N 11.753 20.468 2.609  1.372  2.875  -0.326 C17 9KV 8  
9KV C20 C8  C 0 1 Y N N 19.828 23.512 1.657  3.834  -1.524 0.515  C20 9KV 9  
9KV C21 C9  C 0 1 Y N N 18.332 21.722 1.121  4.150  -3.028 -1.347 C21 9KV 10 
9KV C22 C10 C 0 1 N N N 13.765 25.067 6.428  -2.307 -0.567 2.672  C22 9KV 11 
9KV C24 C11 C 0 1 N N N 12.738 19.684 1.741  2.459  3.394  0.617  C24 9KV 12 
9KV C26 C12 C 0 1 Y N N 9.361  25.383 4.058  -6.087 0.644  -0.404 C26 9KV 13 
9KV C28 C13 C 0 1 Y N N 19.393 20.992 0.607  5.484  -3.148 -1.015 C28 9KV 14 
9KV C1  C14 C 0 1 Y N N 13.719 24.989 2.981  -1.967 -1.145 -1.072 C1  9KV 15 
9KV C16 C15 C 0 1 N N N 13.311 23.620 6.224  -1.124 -0.158 1.793  C16 9KV 16 
9KV C18 C16 C 0 1 Y N N 10.466 24.618 4.405  -4.783 0.797  0.020  C18 9KV 17 
9KV C19 C17 C 0 1 Y N N 10.660 26.635 2.453  -5.442 -1.158 -1.852 C19 9KV 18 
9KV C23 C18 C 0 1 N N N 14.179 22.701 7.080  -0.124 0.646  2.626  C23 9KV 19 
9KV C25 C19 C 0 1 N N N 10.509 20.821 1.817  0.766  4.048  -1.100 C25 9KV 20 
9KV C27 C20 C 0 1 Y N N 9.453  26.376 3.097  -6.413 -0.330 -1.337 C27 9KV 21 
9KV C30 C21 C 0 1 N N N 14.084 23.067 8.567  0.377  -0.211 3.790  C30 9KV 22 
9KV C31 C22 C 0 1 N N N 13.736 25.488 7.947  -1.806 -1.425 3.836  C31 9KV 23 
9KV C32 C23 C 0 1 N N N 9.861  19.566 1.240  1.860  4.741  -1.916 C32 9KV 24 
9KV C33 C24 C 0 1 N N N 12.077 18.456 1.062  3.553  4.087  -0.198 C33 9KV 25 
9KV C35 C25 C 0 1 N N N 10.825 18.827 0.332  2.947  5.260  -0.972 C35 9KV 26 
9KV C36 C26 C 0 1 N N N 14.511 24.515 8.822  -0.806 -0.620 4.669  C36 9KV 27 
9KV N13 N2  N 0 1 N N N 12.421 21.668 3.109  0.324  2.212  0.454  N13 9KV 28 
9KV N2  N3  N 0 1 Y N N 12.935 24.322 3.864  -2.427 -0.127 -0.276 N2  9KV 29 
9KV O14 O1  O 0 1 N N N 12.294 21.140 5.280  -0.193 0.874  -1.238 O14 9KV 30 
9KV C11 C27 C 0 1 Y N N 16.191 25.347 3.388  -0.068 -2.438 -2.098 C11 9KV 31 
9KV C12 C28 C 0 1 Y N N 17.453 24.836 3.047  1.270  -2.708 -1.973 C12 9KV 32 
9KV C29 C29 C 0 1 Y N N 20.885 22.773 1.140  5.171  -1.649 0.833  C29 9KV 33 
9KV C34 C30 C 0 1 Y N N 20.668 21.517 0.616  5.993  -2.462 0.073  C34 9KV 34 
9KV C9  C31 C 0 1 Y N N 17.403 23.768 2.199  1.883  -2.084 -0.929 C9  9KV 35 
9KV S6  S1  S 0 1 Y N N 15.728 23.376 1.807  0.716  -1.099 -0.059 S6  9KV 36 
9KV H1  H1  H 0 1 N N N 14.429 23.039 4.510  -2.237 1.514  1.016  H1  9KV 37 
9KV H2  H2  H 0 1 N N N 11.459 19.835 3.459  1.808  2.164  -1.028 H2  9KV 38 
9KV H3  H3  H 0 1 N N N 20.010 24.495 2.066  3.192  -0.895 1.113  H3  9KV 39 
9KV H4  H4  H 0 1 N N N 17.338 21.299 1.109  3.754  -3.564 -2.197 H4  9KV 40 
9KV H5  H5  H 0 1 N N N 14.792 25.173 6.050  -2.795 0.326  3.063  H5  9KV 41 
9KV H6  H6  H 0 1 N N N 13.096 25.732 5.863  -3.020 -1.140 2.079  H6  9KV 42 
9KV H7  H7  H 0 1 N N N 13.567 19.334 2.374  2.023  4.106  1.318  H7  9KV 43 
9KV H8  H8  H 0 1 N N N 13.130 20.352 0.960  2.891  2.559  1.168  H8  9KV 44 
9KV H9  H9  H 0 1 N N N 8.414  25.201 4.545  -6.859 1.286  -0.007 H9  9KV 45 
9KV H10 H10 H 0 1 N N N 19.220 20.008 0.198  6.131  -3.781 -1.604 H10 9KV 46 
9KV H11 H11 H 0 1 N N N 12.269 23.532 6.565  -0.636 -1.051 1.403  H11 9KV 47 
9KV H12 H12 H 0 1 N N N 10.397 23.843 5.154  -4.536 1.558  0.746  H12 9KV 48 
9KV H13 H13 H 0 1 N N N 10.733 27.408 1.703  -5.703 -1.914 -2.578 H13 9KV 49 
9KV H14 H14 H 0 1 N N N 13.842 21.663 6.945  0.720  0.938  2.000  H14 9KV 50 
9KV H15 H15 H 0 1 N N N 15.226 22.792 6.755  -0.612 1.539  3.017  H15 9KV 51 
9KV H16 H16 H 0 1 N N N 10.785 21.496 0.993  -0.009 3.678  -1.772 H16 9KV 52 
9KV H17 H17 H 0 1 N N N 9.791  21.326 2.480  0.329  4.759  -0.399 H17 9KV 53 
9KV H18 H18 H 0 1 N N N 8.578  26.956 2.844  -7.437 -0.440 -1.660 H18 9KV 54 
9KV H19 H19 H 0 1 N N N 13.044 22.938 8.900  0.865  -1.104 3.400  H19 9KV 55 
9KV H20 H20 H 0 1 N N N 14.739 22.396 9.142  1.090  0.362  4.383  H20 9KV 56 
9KV H21 H21 H 0 1 N N N 14.182 26.489 8.047  -2.649 -1.716 4.463  H21 9KV 57 
9KV H22 H22 H 0 1 N N N 12.691 25.517 8.288  -1.318 -2.318 3.446  H22 9KV 58 
9KV H23 H23 H 0 1 N N N 8.971  19.854 0.662  2.296  4.029  -2.617 H23 9KV 59 
9KV H24 H24 H 0 1 N N N 9.563  18.903 2.065  1.428  5.576  -2.467 H24 9KV 60 
9KV H25 H25 H 0 1 N N N 11.831 17.713 1.834  4.328  4.457  0.474  H25 9KV 61 
9KV H26 H26 H 0 1 N N N 12.789 18.019 0.347  3.989  3.375  -0.900 H26 9KV 62 
9KV H27 H27 H 0 1 N N N 11.084 19.474 -0.519 3.727  5.753  -1.553 H27 9KV 63 
9KV H28 H28 H 0 1 N N N 10.340 17.911 -0.037 2.511  5.971  -0.271 H28 9KV 64 
9KV H29 H29 H 0 1 N N N 15.584 24.615 8.603  -0.449 -1.231 5.498  H29 9KV 65 
9KV H30 H30 H 0 1 N N N 14.328 24.761 9.878  -1.294 0.273  5.060  H30 9KV 66 
9KV H31 H31 H 0 1 N N N 12.731 22.348 2.445  0.186  2.453  1.383  H31 9KV 67 
9KV H32 H32 H 0 1 N N N 16.058 26.191 4.049  -0.678 -2.864 -2.880 H32 9KV 68 
9KV H33 H33 H 0 1 N N N 18.378 25.250 3.421  1.798  -3.364 -2.650 H33 9KV 69 
9KV H34 H34 H 0 1 N N N 21.883 23.186 1.149  5.575  -1.116 1.681  H34 9KV 70 
9KV H35 H35 H 0 1 N N N 21.493 20.947 0.214  7.038  -2.560 0.329  H35 9KV 71 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
9KV C35 C33 SING N N 1  
9KV C35 C32 SING N N 2  
9KV C28 C34 DOUB Y N 3  
9KV C28 C21 SING Y N 4  
9KV C34 C29 SING Y N 5  
9KV C33 C24 SING N N 6  
9KV C21 C15 DOUB Y N 7  
9KV C29 C20 DOUB Y N 8  
9KV C32 C25 SING N N 9  
9KV C15 C20 SING Y N 10 
9KV C15 C9  SING N N 11 
9KV C24 C17 SING N N 12 
9KV S6  C9  SING Y N 13 
9KV S6  C4  SING Y N 14 
9KV C25 C17 SING N N 15 
9KV C9  C12 DOUB Y N 16 
9KV N3  C10 SING Y N 17 
9KV N3  C1  DOUB Y N 18 
9KV C19 C10 DOUB Y N 19 
9KV C19 C27 SING Y N 20 
9KV C17 N13 SING N N 21 
9KV C10 C8  SING Y N 22 
9KV C4  C1  SING N N 23 
9KV C4  C11 DOUB Y N 24 
9KV C1  N2  SING Y N 25 
9KV C12 C11 SING Y N 26 
9KV C27 C26 DOUB Y N 27 
9KV N13 C5  SING N N 28 
9KV C8  N2  SING Y N 29 
9KV C8  C18 DOUB Y N 30 
9KV N2  C7  SING N N 31 
9KV C26 C18 SING Y N 32 
9KV C5  C7  SING N N 33 
9KV C5  O14 DOUB N N 34 
9KV C7  C16 SING N N 35 
9KV C16 C22 SING N N 36 
9KV C16 C23 SING N N 37 
9KV C22 C31 SING N N 38 
9KV C23 C30 SING N N 39 
9KV C31 C36 SING N N 40 
9KV C30 C36 SING N N 41 
9KV C7  H1  SING N N 42 
9KV C17 H2  SING N N 43 
9KV C20 H3  SING N N 44 
9KV C21 H4  SING N N 45 
9KV C22 H5  SING N N 46 
9KV C22 H6  SING N N 47 
9KV C24 H7  SING N N 48 
9KV C24 H8  SING N N 49 
9KV C26 H9  SING N N 50 
9KV C28 H10 SING N N 51 
9KV C16 H11 SING N N 52 
9KV C18 H12 SING N N 53 
9KV C19 H13 SING N N 54 
9KV C23 H14 SING N N 55 
9KV C23 H15 SING N N 56 
9KV C25 H16 SING N N 57 
9KV C25 H17 SING N N 58 
9KV C27 H18 SING N N 59 
9KV C30 H19 SING N N 60 
9KV C30 H20 SING N N 61 
9KV C31 H21 SING N N 62 
9KV C31 H22 SING N N 63 
9KV C32 H23 SING N N 64 
9KV C32 H24 SING N N 65 
9KV C33 H25 SING N N 66 
9KV C33 H26 SING N N 67 
9KV C35 H27 SING N N 68 
9KV C35 H28 SING N N 69 
9KV C36 H29 SING N N 70 
9KV C36 H30 SING N N 71 
9KV N13 H31 SING N N 72 
9KV C11 H32 SING N N 73 
9KV C12 H33 SING N N 74 
9KV C29 H34 SING N N 75 
9KV C34 H35 SING N N 76 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
9KV SMILES           ACDLabs              12.01 "n3c6c(n(C(C(=O)NC1CCCCC1)C2CCCCC2)c3c5ccc(c4ccccc4)s5)cccc6"                                                                                                                                                 
9KV InChI            InChI                1.03  "InChI=1S/C31H35N3OS/c35-31(32-24-16-8-3-9-17-24)29(23-14-6-2-7-15-23)34-26-19-11-10-18-25(26)33-30(34)28-21-20-27(36-28)22-12-4-1-5-13-22/h1,4-5,10-13,18-21,23-24,29H,2-3,6-9,14-17H2,(H,32,35)/t29-/m0/s1" 
9KV InChIKey         InChI                1.03  AUFPVOAEDLSRHU-LJAQVGFWSA-N                                                                                                                                                                                   
9KV SMILES_CANONICAL CACTVS               3.385 "O=C(NC1CCCCC1)[C@H](C2CCCCC2)n3c4ccccc4nc3c5sc(cc5)c6ccccc6"                                                                                                                                                 
9KV SMILES           CACTVS               3.385 "O=C(NC1CCCCC1)[CH](C2CCCCC2)n3c4ccccc4nc3c5sc(cc5)c6ccccc6"                                                                                                                                                  
9KV SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1ccc(cc1)c2ccc(s2)c3nc4ccccc4n3[C@@H](C5CCCCC5)C(=O)NC6CCCCC6"                                                                                                                                              
9KV SMILES           "OpenEye OEToolkits" 2.0.6 "c1ccc(cc1)c2ccc(s2)c3nc4ccccc4n3C(C5CCCCC5)C(=O)NC6CCCCC6"                                                                                                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
9KV "SYSTEMATIC NAME" ACDLabs              12.01 "(2S)-N,2-dicyclohexyl-2-[2-(5-phenylthiophen-2-yl)-1H-benzimidazol-1-yl]acetamide"    
9KV "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(2~{S})-~{N},2-dicyclohexyl-2-[2-(5-phenylthiophen-2-yl)benzimidazol-1-yl]ethanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
9KV "Create component" 2017-05-19 RCSB 
9KV "Initial release"  2017-07-05 RCSB 
# 
