data_78V
# 
_chem_comp.id                                    78V 
_chem_comp.name                                  "4-[2-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methylamino]ethylamino]-1-(methoxymethyl)pyrimidin-2-one" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C18 H25 N9 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-09-14 
_chem_comp.pdbx_modified_date                    2017-09-15 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        447.448 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     78V 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5TBI 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
78V N   N1  N 0 1 N N N 26.131 18.986 125.483 7.518  -1.081 0.188  N   78V 1  
78V N1  N2  N 0 1 N N N 24.983 19.038 123.417 5.283  -0.553 -0.213 N1  78V 2  
78V C6  C1  C 0 1 N N N 23.607 20.301 121.437 2.917  0.801  0.320  C6  78V 3  
78V C5  C2  C 0 1 N N N 25.764 18.358 124.292 6.385  -1.235 -0.521 C5  78V 4  
78V C4  C3  C 0 1 N N N 24.564 20.264 123.711 5.279  0.306  0.799  C4  78V 5  
78V N4  N3  N 0 1 Y N N 23.926 24.885 116.172 -4.374 -0.349 0.099  N4  78V 6  
78V N3  N4  N 0 1 N N N 24.514 20.585 119.178 0.578  1.488  0.079  N3  78V 7  
78V C2  C4  C 0 1 N N N 25.635 20.214 125.786 7.559  -0.219 1.242  C2  78V 8  
78V O2  O1  O 0 1 N N N 23.577 22.651 116.729 -2.257 0.743  -0.076 O2  78V 9  
78V C   C5  C 0 1 N N N 28.718 20.117 125.699 10.059 -0.101 -1.108 C   78V 10 
78V O   O2  O 0 1 N N N 28.053 19.476 126.778 9.303  -1.289 -1.347 O   78V 11 
78V O1  O3  O 0 1 N N N 26.125 17.200 124.092 6.366  -2.010 -1.463 O1  78V 12 
78V C1  C6  C 0 1 N N N 27.172 18.466 126.373 8.713  -1.849 -0.172 C1  78V 13 
78V C3  C7  C 0 1 N N N 24.852 20.891 124.941 6.449  0.485  1.565  C3  78V 14 
78V N2  N5  N 0 1 N N N 23.878 20.888 122.739 4.135  1.004  1.108  N2  78V 15 
78V C7  C8  C 0 1 N N N 23.962 21.281 120.342 1.800  1.692  0.869  C7  78V 16 
78V C8  C9  C 0 1 N N N 23.666 20.592 117.985 -0.518 2.329  0.578  C8  78V 17 
78V C9  C10 C 0 1 N N R 24.283 21.403 116.859 -1.770 2.089  -0.268 C9  78V 18 
78V C12 C11 C 0 1 N N S 25.777 21.769 116.941 -2.924 2.998  0.210  C12 78V 19 
78V O4  O4  O 0 1 N N N 26.505 21.057 115.948 -3.024 4.158  -0.618 O4  78V 20 
78V C11 C12 C 0 1 N N R 25.810 23.285 116.674 -4.183 2.115  0.064  C11 78V 21 
78V O3  O5  O 0 1 N N N 26.842 23.644 115.762 -5.102 2.703  -0.859 O3  78V 22 
78V C10 C13 C 0 1 N N R 24.441 23.525 116.048 -3.641 0.777  -0.486 C10 78V 23 
78V C15 C14 C 0 1 Y N N 23.359 25.636 115.171 -5.558 -0.871 -0.356 C15 78V 24 
78V N6  N6  N 0 1 Y N N 23.177 25.282 113.895 -6.384 -0.590 -1.359 N6  78V 25 
78V C16 C15 C 0 1 Y N N 22.566 26.253 113.212 -7.481 -1.294 -1.543 C16 78V 26 
78V N7  N7  N 0 1 Y N N 22.157 27.451 113.641 -7.817 -2.300 -0.756 N7  78V 27 
78V C17 C16 C 0 1 Y N N 22.364 27.784 114.933 -7.053 -2.655 0.273  C17 78V 28 
78V N8  N8  N 0 1 N N N 21.971 28.989 115.353 -7.414 -3.711 1.092  N8  78V 29 
78V C14 C17 C 0 1 Y N N 22.995 26.835 115.760 -5.872 -1.933 0.510  C14 78V 30 
78V N5  N9  N 0 1 Y N N 23.329 26.844 117.105 -4.880 -2.003 1.430  N5  78V 31 
78V C13 C18 C 0 1 Y N N 23.877 25.667 117.296 -4.000 -1.075 1.191  C13 78V 32 
78V H8  H1  H 0 1 N N N 22.539 20.048 121.367 3.110  1.060  -0.721 H8  78V 33 
78V H9  H2  H 0 1 N N N 24.208 19.388 121.317 2.613  -0.244 0.384  H9  78V 34 
78V H12 H3  H 0 1 N N N 24.677 19.633 119.436 0.312  0.515  0.069  H12 78V 35 
78V H5  H5  H 0 1 N N N 25.881 20.657 126.740 8.467  -0.099 1.814  H5  78V 36 
78V H1  H6  H 0 1 N N N 29.390 20.895 126.092 10.534 0.220  -2.036 H1  78V 37 
78V H   H7  H 0 1 N N N 29.305 19.375 125.137 9.396  0.686  -0.748 H   78V 38 
78V H2  H8  H 0 1 N N N 27.974 20.578 125.032 10.825 -0.302 -0.359 H2  78V 39 
78V H4  H9  H 0 1 N N N 26.696 18.029 127.263 9.430  -1.811 0.648  H4  78V 40 
78V H3  H10 H 0 1 N N N 27.740 17.688 125.842 8.434  -2.885 -0.364 H3  78V 41 
78V H6  H11 H 0 1 N N N 24.460 21.867 125.187 6.462  1.181  2.391  H6  78V 42 
78V H7  H12 H 0 1 N N N 23.534 21.809 122.922 4.135  1.632  1.848  H7  78V 43 
78V H11 H13 H 0 1 N N N 24.709 21.993 120.724 1.607  1.433  1.910  H11 78V 44 
78V H10 H14 H 0 1 N N N 23.056 21.827 120.039 2.104  2.736  0.804  H10 78V 45 
78V H13 H15 H 0 1 N N N 22.690 21.028 118.244 -0.727 2.074  1.617  H13 78V 46 
78V H14 H16 H 0 1 N N N 23.525 19.556 117.642 -0.230 3.378  0.512  H14 78V 47 
78V H15 H17 H 0 1 N N N 24.143 20.830 115.930 -1.557 2.269  -1.322 H15 78V 48 
78V H19 H18 H 0 1 N N N 26.158 21.559 117.951 -2.778 3.285  1.252  H19 78V 49 
78V H20 H19 H 0 1 N N N 26.469 20.126 116.135 -3.733 4.764  -0.362 H20 78V 50 
78V H17 H20 H 0 1 N N N 25.896 23.833 117.624 -4.659 1.965  1.033  H17 78V 51 
78V H18 H21 H 0 1 N N N 27.689 23.490 116.164 -5.428 3.572  -0.590 H18 78V 52 
78V H16 H22 H 0 1 N N N 24.492 23.252 114.984 -3.717 0.754  -1.573 H16 78V 53 
78V H22 H23 H 0 1 N N N 22.376 26.041 112.170 -8.130 -1.040 -2.367 H22 78V 54 
78V H23 H24 H 0 1 N N N 21.557 29.489 114.592 -8.233 -4.201 0.918  H23 78V 55 
78V H24 H25 H 0 1 N N N 21.300 28.884 116.087 -6.849 -3.960 1.839  H24 78V 56 
78V H21 H26 H 0 1 N N N 24.256 25.343 118.254 -3.104 -0.907 1.769  H21 78V 57 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
78V C16 N7  DOUB Y N 1  
78V C16 N6  SING Y N 2  
78V N7  C17 SING Y N 3  
78V N6  C15 DOUB Y N 4  
78V C17 N8  SING N N 5  
78V C17 C14 DOUB Y N 6  
78V C15 C14 SING Y N 7  
78V C15 N4  SING Y N 8  
78V C14 N5  SING Y N 9  
78V O3  C11 SING N N 10 
78V O4  C12 SING N N 11 
78V C10 N4  SING N N 12 
78V C10 C11 SING N N 13 
78V C10 O2  SING N N 14 
78V N4  C13 SING Y N 15 
78V C11 C12 SING N N 16 
78V O2  C9  SING N N 17 
78V C9  C12 SING N N 18 
78V C9  C8  SING N N 19 
78V N5  C13 DOUB Y N 20 
78V C8  N3  SING N N 21 
78V N3  C7  SING N N 22 
78V C7  C6  SING N N 23 
78V C6  N2  SING N N 24 
78V N2  C4  SING N N 25 
78V N1  C4  DOUB N N 26 
78V N1  C5  SING N N 27 
78V C4  C3  SING N N 28 
78V O1  C5  DOUB N N 29 
78V C5  N   SING N N 30 
78V C3  C2  DOUB N N 31 
78V N   C2  SING N N 32 
78V N   C1  SING N N 33 
78V C   O   SING N N 34 
78V C1  O   SING N N 35 
78V C6  H8  SING N N 36 
78V C6  H9  SING N N 37 
78V N3  H12 SING N N 38 
78V C2  H5  SING N N 39 
78V C   H1  SING N N 40 
78V C   H   SING N N 41 
78V C   H2  SING N N 42 
78V C1  H4  SING N N 43 
78V C1  H3  SING N N 44 
78V C3  H6  SING N N 45 
78V N2  H7  SING N N 46 
78V C7  H11 SING N N 47 
78V C7  H10 SING N N 48 
78V C8  H13 SING N N 49 
78V C8  H14 SING N N 50 
78V C9  H15 SING N N 51 
78V C12 H19 SING N N 52 
78V O4  H20 SING N N 53 
78V C11 H17 SING N N 54 
78V O3  H18 SING N N 55 
78V C10 H16 SING N N 56 
78V C16 H22 SING N N 57 
78V N8  H23 SING N N 58 
78V N8  H24 SING N N 59 
78V C13 H21 SING N N 60 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
78V InChI            InChI                1.03  
"InChI=1S/C18H25N9O5/c1-31-9-26-5-2-11(25-18(26)30)21-4-3-20-6-10-13(28)14(29)17(32-10)27-8-24-12-15(19)22-7-23-16(12)27/h2,5,7-8,10,13-14,17,20,28-29H,3-4,6,9H2,1H3,(H2,19,22,23)(H,21,25,30)/t10-,13-,14-,17-/m1/s1" 
78V InChIKey         InChI                1.03  ZZOHCVFRIAWCAC-IWCJZZDYSA-N 
78V SMILES_CANONICAL CACTVS               3.385 "COCN1C=CC(=NC1=O)NCCNC[C@H]2O[C@H]([C@H](O)[C@@H]2O)n3cnc4c(N)ncnc34" 
78V SMILES           CACTVS               3.385 "COCN1C=CC(=NC1=O)NCCNC[CH]2O[CH]([CH](O)[CH]2O)n3cnc4c(N)ncnc34" 
78V SMILES_CANONICAL "OpenEye OEToolkits" 2.0.5 "COCN1C=CC(=NC1=O)NCCNC[C@@H]2[C@H]([C@H]([C@@H](O2)n3cnc4c3ncnc4N)O)O" 
78V SMILES           "OpenEye OEToolkits" 2.0.5 "COCN1C=CC(=NC1=O)NCCNCC2C(C(C(O2)n3cnc4c3ncnc4N)O)O" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
78V "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.5 "4-[2-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methylamino]ethylamino]-1-(methoxymethyl)pyrimidin-2-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
78V "Create component" 2016-09-14 EBI  
78V "Initial release"  2017-09-20 RCSB 
# 
