data_66V
# 
_chem_comp.id                                    66V 
_chem_comp.name                                  "1-(8-{[(1S,2R,3S,4S,5R,6R)-2,3,4,5-tetrahydroxy-6-(hydroxymethyl)cyclohexyl]amino}octyl)triaza-1,2-dien-2-ium" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C15 H31 N4 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    1 
_chem_comp.pdbx_initial_date                     2016-02-09 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        347.430 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     66V 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5I23 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
66V C1  C1  C 0 1 N N R N N N 15.858 157.166 137.686 3.343   1.312  -0.408 C1  66V 1  
66V C2  C2  C 0 1 N N S N N N 16.037 155.627 137.651 4.640   1.798  0.243  C2  66V 2  
66V C3  C3  C 0 1 N N S N N N 15.510 154.911 138.877 5.782   0.848  -0.122 C3  66V 3  
66V C4  C4  C 0 1 N N R N N N 15.807 155.756 140.079 5.455   -0.560 0.380  C4  66V 4  
66V C5  C5  C 0 1 N N R N N N 14.891 156.988 140.055 4.159   -1.046 -0.271 C5  66V 5  
66V C6  C6  C 0 1 N N S N N N 14.838 157.710 138.689 3.017   -0.096 0.095  C6  66V 6  
66V C7  C7  C 0 1 N N N N N N 15.178 157.942 141.213 3.832   -2.454 0.232  C7  66V 7  
66V N8  N1  N 0 1 N N N N N N 13.480 157.654 138.051 1.772   -0.563 -0.531 N8  66V 8  
66V C9  C8  C 0 1 N N N N N N 12.505 158.426 138.858 0.598   -0.091 0.216  C9  66V 9  
66V C10 C9  C 0 1 N N N N N N 11.033 158.312 138.412 -0.676  -0.596 -0.464 C10 66V 10 
66V C11 C10 C 0 1 N N N N N N 10.224 159.095 139.449 -1.898  -0.106 0.315  C11 66V 11 
66V C12 C11 C 0 1 N N N N N N 8.723  159.115 139.235 -3.172  -0.611 -0.365 C12 66V 12 
66V C13 C12 C 0 1 N N N N N N 7.961  159.087 140.566 -4.395  -0.120 0.413  C13 66V 13 
66V C14 C13 C 0 1 N N N N N N 6.450  159.082 140.311 -5.669  -0.625 -0.267 C14 66V 14 
66V C15 C14 C 0 1 N N N N N N 5.625  158.788 141.569 -6.891  -0.134 0.511  C15 66V 15 
66V C16 C15 C 0 1 N N N N N N 4.338  158.042 141.222 -8.165  -0.639 -0.169 C16 66V 16 
66V N17 N2  N 0 1 N N N N N N 3.487  158.761 140.291 -9.336  -0.169 0.576  N17 66V 17 
66V N18 N3  N 1 1 N N N N N N 2.623  158.068 139.467 -10.100 0.482  0.071  N18 66V 18 
66V N19 N4  N 0 1 N N N N N N 1.890  157.497 138.768 -10.864 1.133  -0.435 N19 66V 19 
66V O20 O1  O 0 1 N N N N N N 15.475 155.068 136.452 4.945   3.112  -0.226 O20 66V 20 
66V O21 O2  O 0 1 N N N N N N 16.125 153.605 138.998 6.992   1.302  0.486  O21 66V 21 
66V O22 O3  O 0 1 N N N N N N 15.552 155.005 141.263 6.522   -1.447 0.039  O22 66V 22 
66V O23 O4  O 0 1 N N N N N N 16.526 158.444 141.175 4.841   -3.364 -0.210 O23 66V 23 
66V H1  H1  H 0 1 N N N N N N 15.539 157.483 136.682 3.466   1.291  -1.491 H1  66V 24 
66V H3  H3  H 0 1 N N N N N N 17.122 155.445 137.624 4.517   1.818  1.326  H3  66V 25 
66V H4  H4  H 0 1 N N N N N N 14.420 154.799 138.780 5.905   0.827  -1.205 H4  66V 26 
66V H5  H5  H 0 1 N N N N N N 16.856 156.086 140.048 5.332   -0.540 1.463  H5  66V 27 
66V H6  H6  H 0 1 N N N N N N 13.874 156.606 140.227 4.282   -1.066 -1.354 H6  66V 28 
66V H7  H7  H 0 1 N N N N N N 15.083 158.767 138.868 2.894   -0.076 1.178  H7  66V 29 
66V H8  H8  H 0 1 N N N N N N 14.481 158.791 141.155 3.796   -2.451 1.321  H8  66V 30 
66V H9  H9  H 0 1 N N N N N N 15.025 157.406 142.161 2.865   -2.765 -0.162 H9  66V 31 
66V H10 H10 H 0 1 N N N N N N 13.530 158.044 137.132 1.724   -0.277 -1.497 H10 66V 32 
66V H12 H12 H 0 1 N N N N N N 12.572 158.074 139.898 0.641   -0.472 1.237  H12 66V 33 
66V H13 H13 H 0 1 N N N N N N 12.792 159.487 138.811 0.593   0.998  0.235  H13 66V 34 
66V H14 H14 H 0 1 N N N N N N 10.900 158.750 137.412 -0.718  -0.216 -1.484 H14 66V 35 
66V H15 H15 H 0 1 N N N N N N 10.718 157.258 138.396 -0.670  -1.686 -0.482 H15 66V 36 
66V H16 H16 H 0 1 N N N N N N 10.419 158.649 140.436 -1.856  -0.486 1.335  H16 66V 37 
66V H17 H17 H 0 1 N N N N N N 10.580 160.136 139.440 -1.904  0.984  0.333  H17 66V 38 
66V H18 H18 H 0 1 N N N N N N 8.453  160.031 138.688 -3.214  -0.230 -1.386 H18 66V 39 
66V H19 H19 H 0 1 N N N N N N 8.436  158.235 138.641 -3.167  -1.701 -0.384 H19 66V 40 
66V H20 H20 H 0 1 N N N N N N 8.238  158.181 141.124 -4.352  -0.501 1.434  H20 66V 41 
66V H21 H21 H 0 1 N N N N N N 8.227  159.977 141.156 -4.400  0.970  0.431  H21 66V 42 
66V H22 H22 H 0 1 N N N N N N 6.158  160.069 139.924 -5.711  -0.244 -1.288 H22 66V 43 
66V H23 H23 H 0 1 N N N N N N 6.225  158.312 139.558 -5.663  -1.715 -0.286 H23 66V 44 
66V H24 H24 H 0 1 N N N N N N 6.224  158.171 142.255 -6.849  -0.515 1.532  H24 66V 45 
66V H25 H25 H 0 1 N N N N N N 5.368  159.738 142.060 -6.897  0.956  0.530  H25 66V 46 
66V H26 H26 H 0 1 N N N N N N 3.773  157.871 142.150 -8.208  -0.259 -1.190 H26 66V 47 
66V H27 H27 H 0 1 N N N N N N 4.606  157.074 140.773 -8.160  -1.729 -0.188 H27 66V 48 
66V H28 H28 H 0 1 N N N N N N 1.322  158.121 138.231 -10.768 2.098  -0.416 H28 66V 49 
66V H29 H29 H 0 1 N N N N N N 15.597 154.126 136.454 5.756   3.485  0.146  H29 66V 50 
66V H30 H30 H 0 1 N N N N N N 15.787 153.166 139.770 7.261   2.189  0.213  H30 66V 51 
66V H31 H31 H 0 1 N N N N N N 15.740 155.540 142.025 7.376   -1.200 0.419  H31 66V 52 
66V H32 H32 H 0 1 N N N N N N 16.666 159.032 141.908 4.699   -4.277 0.073  H32 66V 53 
66V O1  O5  O 0 1 N Y N N N N 17.131 157.779 137.982 2.277   2.199  -0.067 O1  66V 54 
66V H2  H2  H 0 1 N N N N N N 17.030 158.723 138.005 2.416   3.111  -0.355 H2  66V 55 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
66V O20 C2  SING N N 1  
66V C2  C1  SING N N 2  
66V C2  C3  SING N N 3  
66V C1  C6  SING N N 4  
66V N8  C6  SING N N 5  
66V N8  C9  SING N N 6  
66V C10 C9  SING N N 7  
66V C10 C11 SING N N 8  
66V C6  C5  SING N N 9  
66V N19 N18 DOUB N N 10 
66V C3  O21 SING N N 11 
66V C3  C4  SING N N 12 
66V C12 C11 SING N N 13 
66V C12 C13 SING N N 14 
66V N18 N17 DOUB N N 15 
66V C5  C4  SING N N 16 
66V C5  C7  SING N N 17 
66V C4  O22 SING N N 18 
66V N17 C16 SING N N 19 
66V C14 C13 SING N N 20 
66V C14 C15 SING N N 21 
66V O23 C7  SING N N 22 
66V C16 C15 SING N N 23 
66V C1  H1  SING N N 24 
66V C2  H3  SING N N 25 
66V C3  H4  SING N N 26 
66V C4  H5  SING N N 27 
66V C5  H6  SING N N 28 
66V C6  H7  SING N N 29 
66V C7  H8  SING N N 30 
66V C7  H9  SING N N 31 
66V N8  H10 SING N N 32 
66V C9  H12 SING N N 33 
66V C9  H13 SING N N 34 
66V C10 H14 SING N N 35 
66V C10 H15 SING N N 36 
66V C11 H16 SING N N 37 
66V C11 H17 SING N N 38 
66V C12 H18 SING N N 39 
66V C12 H19 SING N N 40 
66V C13 H20 SING N N 41 
66V C13 H21 SING N N 42 
66V C14 H22 SING N N 43 
66V C14 H23 SING N N 44 
66V C15 H24 SING N N 45 
66V C15 H25 SING N N 46 
66V C16 H26 SING N N 47 
66V C16 H27 SING N N 48 
66V N19 H28 SING N N 49 
66V O20 H29 SING N N 50 
66V O21 H30 SING N N 51 
66V O22 H31 SING N N 52 
66V O23 H32 SING N N 53 
66V C1  O1  SING N N 54 
66V O1  H2  SING N N 55 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
66V SMILES           ACDLabs              12.01 "C1(C(C(C(C(C1O)O)O)CO)NCCCCCCCC\N=[N+]=N)O"                                                                                                    
66V InChI            InChI                1.03  "InChI=1S/C15H31N4O5/c16-19-18-8-6-4-2-1-3-5-7-17-11-10(9-20)12(21)14(23)15(24)13(11)22/h10-17,20-24H,1-9H2/q+1/t10-,11-,12+,13+,14-,15-/m0/s1" 
66V InChIKey         InChI                1.03  KPTZFIOZQLVZBJ-SAAWNECCSA-N                                                                                                                     
66V SMILES_CANONICAL CACTVS               3.385 "OC[C@@H]1[C@@H](O)[C@H](O)[C@@H](O)[C@H](O)[C@H]1NCCCCCCCCN=[N+]=N"                                                                            
66V SMILES           CACTVS               3.385 "OC[CH]1[CH](O)[CH](O)[CH](O)[CH](O)[CH]1NCCCCCCCCN=[N+]=N"                                                                                     
66V SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "C(CCCCN=[N+]=N)CCCN[C@H]1[C@@H]([C@H]([C@@H]([C@H]([C@@H]1O)O)O)O)CO"                                                                          
66V SMILES           "OpenEye OEToolkits" 2.0.4 "C(CCCCN=[N+]=N)CCCNC1C(C(C(C(C1O)O)O)O)CO"                                                                                                     
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
66V "SYSTEMATIC NAME" ACDLabs              12.01 "1-(8-{[(1S,2R,3S,4S,5R,6R)-2,3,4,5-tetrahydroxy-6-(hydroxymethyl)cyclohexyl]amino}octyl)triaza-1,2-dien-2-ium"                          
66V "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "azanylidene-[8-[[(1~{S},2~{R},3~{R},4~{S},5~{S},6~{R})-2-(hydroxymethyl)-3,4,5,6-tetrakis(oxidanyl)cyclohexyl]amino]octylimino]azanium" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
66V "Create component" 2016-02-09 EBI  
66V "Modify charge"    2016-02-09 EBI  
66V "Initial release"  2016-05-04 RCSB 
66V "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            66V 
_pdbx_chem_comp_pcm.modified_residue_id                ASP 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C1 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OD2 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
