data_5ZV
# 
_chem_comp.id                                    5ZV 
_chem_comp.name                                  "[[(2~{R},3~{R},4~{S},5~{R})-5-(3-aminocarbonylpyridin-1-yl)-4-fluoranyl-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H27 F N7 O13 P2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-02-10 
_chem_comp.pdbx_modified_date                    2023-01-20 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        666.424 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     5ZV 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   Y 
_chem_comp.pdbx_model_coordinates_db_code        7WR5 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
5ZV O7N O1  O 0  1 N N N 19.328 28.897 42.744 ? ? ? O7N 5ZV 1  
5ZV C7N C1  C 0  1 N N N 18.469 28.893 43.562 ? ? ? C7N 5ZV 2  
5ZV N7N N1  N 0  1 N N N 18.213 27.690 44.333 ? ? ? N7N 5ZV 3  
5ZV C3N C2  C 0  1 Y N N 17.649 30.162 43.805 ? ? ? C3N 5ZV 4  
5ZV C4N C3  C 0  1 Y N N 17.455 31.070 42.778 ? ? ? C4N 5ZV 5  
5ZV C5N C4  C 0  1 Y N N 16.708 32.204 43.045 ? ? ? C5N 5ZV 6  
5ZV C6N C5  C 0  1 Y N N 16.190 32.397 44.316 ? ? ? C6N 5ZV 7  
5ZV C2N C6  C 0  1 Y N N 17.093 30.418 45.049 ? ? ? C2N 5ZV 8  
5ZV N1N N2  N 1  1 Y N N 16.375 31.507 45.278 ? ? ? N1N 5ZV 9  
5ZV C1D C7  C 0  1 N N R 15.843 31.714 46.599 ? ? ? C1D 5ZV 10 
5ZV C2D C8  C 0  1 N N S 14.224 32.170 46.690 ? ? ? C2D 5ZV 11 
5ZV F2D F1  F 0  1 N N N 13.610 32.330 45.418 ? ? ? F2D 5ZV 12 
5ZV C3D C9  C 0  1 N N R 13.600 31.277 47.347 ? ? ? C3D 5ZV 13 
5ZV O3D O2  O 0  1 N N N 12.659 31.919 48.326 ? ? ? O3D 5ZV 14 
5ZV O4D O3  O 0  1 N N N 15.985 30.630 47.277 ? ? ? O4D 5ZV 15 
5ZV C4D C10 C 0  1 N N R 14.697 30.466 48.123 ? ? ? C4D 5ZV 16 
5ZV C5D C11 C 0  1 N N N 14.353 29.132 48.183 ? ? ? C5D 5ZV 17 
5ZV O5D O4  O 0  1 N N N 15.523 28.376 48.053 ? ? ? O5D 5ZV 18 
5ZV PN  P1  P 0  1 N N N 15.558 27.134 46.973 ? ? ? PN  5ZV 19 
5ZV O1N O5  O -1 1 N N N 16.855 26.375 47.120 ? ? ? O1N 5ZV 20 
5ZV O2N O6  O 0  1 N N N 15.465 27.688 45.572 ? ? ? O2N 5ZV 21 
5ZV O3  O7  O 0  1 N N N 14.285 26.121 47.253 ? ? ? O3  5ZV 22 
5ZV PA  P2  P 0  1 N N N 13.876 25.537 48.738 ? ? ? PA  5ZV 23 
5ZV O1A O8  O 0  1 N N N 12.754 26.366 49.318 ? ? ? O1A 5ZV 24 
5ZV O2A O9  O 0  1 N N N 15.076 25.593 49.653 ? ? ? O2A 5ZV 25 
5ZV O5B O10 O 0  1 N N N 13.379 23.975 48.586 ? ? ? O5B 5ZV 26 
5ZV C5B C12 C 0  1 N N N 13.972 23.188 47.595 ? ? ? C5B 5ZV 27 
5ZV C4B C13 C 0  1 N N R 15.294 22.671 48.126 ? ? ? C4B 5ZV 28 
5ZV O4B O11 O 0  1 N N N 15.286 21.047 48.184 ? ? ? O4B 5ZV 29 
5ZV C1B C14 C 0  1 N N R 16.085 20.613 47.288 ? ? ? C1B 5ZV 30 
5ZV C2B C15 C 0  1 N N R 16.414 21.838 46.387 ? ? ? C2B 5ZV 31 
5ZV O2B O12 O 0  1 N N N 17.696 21.759 45.940 ? ? ? O2B 5ZV 32 
5ZV C3B C16 C 0  1 N N S 16.255 23.020 47.320 ? ? ? C3B 5ZV 33 
5ZV O3B O13 O 0  1 N N N 17.523 23.245 48.106 ? ? ? O3B 5ZV 34 
5ZV N9A N3  N 0  1 Y N N 15.437 19.533 46.494 ? ? ? N9A 5ZV 35 
5ZV C8A C17 C 0  1 Y N N 14.786 19.673 45.350 ? ? ? C8A 5ZV 36 
5ZV N7A N4  N 0  1 Y N N 14.350 18.490 44.941 ? ? ? N7A 5ZV 37 
5ZV C5A C18 C 0  1 Y N N 14.723 17.563 45.839 ? ? ? C5A 5ZV 38 
5ZV C6A C19 C 0  1 Y N N 14.571 16.171 45.972 ? ? ? C6A 5ZV 39 
5ZV N6A N5  N 0  1 N N N 13.851 15.420 44.960 ? ? ? N6A 5ZV 40 
5ZV C4A C20 C 0  1 Y N N 15.414 18.231 46.824 ? ? ? C4A 5ZV 41 
5ZV N3A N6  N 0  1 Y N N 15.908 17.534 47.857 ? ? ? N3A 5ZV 42 
5ZV C2A C21 C 0  1 Y N N 15.740 16.224 47.944 ? ? ? C2A 5ZV 43 
5ZV N1A N7  N 0  1 Y N N 15.082 15.539 47.019 ? ? ? N1A 5ZV 44 
5ZV H1  H1  H 0  1 N N N 18.760 26.868 44.174 ? ? ? H1  5ZV 45 
5ZV H2  H2  H 0  1 N N N 17.490 27.683 45.023 ? ? ? H2  5ZV 46 
5ZV H3  H3  H 0  1 N N N 17.874 30.898 41.798 ? ? ? H3  5ZV 47 
5ZV H4  H4  H 0  1 N N N 16.530 32.933 42.269 ? ? ? H4  5ZV 48 
5ZV H5  H5  H 0  1 N N N 15.624 33.292 44.526 ? ? ? H5  5ZV 49 
5ZV H6  H6  H 0  1 N N N 17.249 29.712 45.851 ? ? ? H6  5ZV 50 
5ZV H7  H7  H 0  1 N N N 16.404 32.535 47.069 ? ? ? H7  5ZV 51 
5ZV H8  H8  H 0  1 N N N 14.212 33.135 47.217 ? ? ? H8  5ZV 52 
5ZV H9  H9  H 0  1 N N N 13.040 30.581 46.705 ? ? ? H9  5ZV 53 
5ZV H10 H10 H 0  1 N N N 12.198 31.245 48.811 ? ? ? H10 5ZV 54 
5ZV H11 H11 H 0  1 N N N 14.846 30.907 49.120 ? ? ? H11 5ZV 55 
5ZV H12 H12 H 0  1 N N N 13.659 28.889 47.365 ? ? ? H12 5ZV 56 
5ZV H13 H13 H 0  1 N N N 13.873 28.914 49.148 ? ? ? H13 5ZV 57 
5ZV H15 H15 H 0  1 N N N 14.876 26.139 50.405 ? ? ? H15 5ZV 58 
5ZV H16 H16 H 0  1 N N N 14.145 23.793 46.693 ? ? ? H16 5ZV 59 
5ZV H17 H17 H 0  1 N N N 13.314 22.342 47.348 ? ? ? H17 5ZV 60 
5ZV H18 H18 H 0  1 N N N 15.445 23.045 49.149 ? ? ? H18 5ZV 61 
5ZV H19 H19 H 0  1 N N N 17.026 20.234 47.712 ? ? ? H19 5ZV 62 
5ZV H20 H20 H 0  1 N N N 15.683 21.900 45.567 ? ? ? H20 5ZV 63 
5ZV H21 H21 H 0  1 N N N 17.887 22.511 45.391 ? ? ? H21 5ZV 64 
5ZV H22 H22 H 0  1 N N N 16.018 23.921 46.736 ? ? ? H22 5ZV 65 
5ZV H23 H23 H 0  1 N N N 17.409 23.989 48.686 ? ? ? H23 5ZV 66 
5ZV H24 H24 H 0  1 N N N 14.634 20.607 44.830 ? ? ? H24 5ZV 67 
5ZV H25 H25 H 0  1 N N N 13.837 14.452 45.210 ? ? ? H25 5ZV 68 
5ZV H26 H26 H 0  1 N N N 12.913 15.761 44.896 ? ? ? H26 5ZV 69 
5ZV H27 H27 H 0  1 N N N 16.151 15.698 48.793 ? ? ? H27 5ZV 70 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
5ZV O7N C7N DOUB N N 1  
5ZV C4N C5N SING Y N 2  
5ZV C4N C3N DOUB Y N 3  
5ZV C5N C6N DOUB Y N 4  
5ZV C7N C3N SING N N 5  
5ZV C7N N7N SING N N 6  
5ZV C3N C2N SING Y N 7  
5ZV C6N N1N SING Y N 8  
5ZV N7A C8A DOUB Y N 9  
5ZV N7A C5A SING Y N 10 
5ZV N6A C6A SING N N 11 
5ZV C2N N1N DOUB Y N 12 
5ZV N1N C1D SING N N 13 
5ZV C8A N9A SING Y N 14 
5ZV F2D C2D SING N N 15 
5ZV O2N PN  DOUB N N 16 
5ZV C5A C6A DOUB Y N 17 
5ZV C5A C4A SING Y N 18 
5ZV O2B C2B SING N N 19 
5ZV C6A N1A SING Y N 20 
5ZV C2B C1B SING N N 21 
5ZV C2B C3B SING N N 22 
5ZV N9A C4A SING Y N 23 
5ZV N9A C1B SING N N 24 
5ZV C1D C2D SING N N 25 
5ZV C1D O4D SING N N 26 
5ZV C2D C3D SING N N 27 
5ZV C4A N3A DOUB Y N 28 
5ZV PN  O1N SING N N 29 
5ZV PN  O3  SING N N 30 
5ZV PN  O5D SING N N 31 
5ZV N1A C2A DOUB Y N 32 
5ZV O3  PA  SING N N 33 
5ZV O4D C4D SING N N 34 
5ZV C1B O4B SING N N 35 
5ZV C3B O3B SING N N 36 
5ZV C3B C4B SING N N 37 
5ZV C3D C4D SING N N 38 
5ZV C3D O3D SING N N 39 
5ZV C5B C4B SING N N 40 
5ZV C5B O5B SING N N 41 
5ZV N3A C2A SING Y N 42 
5ZV O5D C5D SING N N 43 
5ZV C4D C5D SING N N 44 
5ZV C4B O4B SING N N 45 
5ZV O5B PA  SING N N 46 
5ZV PA  O1A DOUB N N 47 
5ZV PA  O2A SING N N 48 
5ZV N7N H1  SING N N 49 
5ZV N7N H2  SING N N 50 
5ZV C4N H3  SING N N 51 
5ZV C5N H4  SING N N 52 
5ZV C6N H5  SING N N 53 
5ZV C2N H6  SING N N 54 
5ZV C1D H7  SING N N 55 
5ZV C2D H8  SING N N 56 
5ZV C3D H9  SING N N 57 
5ZV O3D H10 SING N N 58 
5ZV C4D H11 SING N N 59 
5ZV C5D H12 SING N N 60 
5ZV C5D H13 SING N N 61 
5ZV O2A H15 SING N N 62 
5ZV C5B H16 SING N N 63 
5ZV C5B H17 SING N N 64 
5ZV C4B H18 SING N N 65 
5ZV C1B H19 SING N N 66 
5ZV C2B H20 SING N N 67 
5ZV O2B H21 SING N N 68 
5ZV C3B H22 SING N N 69 
5ZV O3B H23 SING N N 70 
5ZV C8A H24 SING N N 71 
5ZV N6A H25 SING N N 72 
5ZV N6A H26 SING N N 73 
5ZV C2A H27 SING N N 74 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
5ZV InChI            InChI                1.03  "InChI=1S/C21H27FN7O13P2/c22-12-14(30)10(40-20(12)28-3-1-2-9(4-28)18(24)33)5-38-43(34,35)42-44(36,37)39-6-11-15(31)16(32)21(41-11)29-8-27-13-17(23)25-7-26-19(13)29/h1-4,7-8,10-12,14-16,20-21,30-32H,5-6H2,(H2,24,33)(H,34,35)(H,36,37)(H2,23,25,26)/t10-,11-,12+,14-,15-,16-,20-,21-/m1/s1" 
5ZV InChIKey         InChI                1.03  KKCPXEYWHWVQJS-IVHCLJLKSA-N                                                                                                                                                                                                                                                                   
5ZV SMILES_CANONICAL CACTVS               3.385 "NC(=O)c1ccc[n](c1)[C@@H]2O[C@H](CO[P](O)(=O)O[P](O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3O)n4cnc5c(N)ncnc45)[C@@H](O)[C@@H]2F"                                                                                                                                                                   
5ZV SMILES           CACTVS               3.385 "NC(=O)c1ccc[n](c1)[CH]2O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O)[CH]3O)n4cnc5c(N)ncnc45)[CH](O)[CH]2F"                                                                                                                                                                               
5ZV SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OC[C@@H]4[C@H]([C@@H]([C@@H](O4)[N]5=CC=CC(=C5)C(=O)N)F)O)O)O)N"                                                                                                                                                           
5ZV SMILES           "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OCC4C(C(C(O4)[N]5=CC=CC(=C5)C(=O)N)F)O)O)O)N"                                                                                                                                                                                                
# 
_pdbx_chem_comp_identifier.comp_id           5ZV 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "[[(2~{R},3~{R},4~{S},5~{R})-5-(3-aminocarbonylpyridin-1-yl)-4-fluoranyl-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
5ZV "Create component" 2022-02-10 PDBJ 
5ZV "Initial release"  2023-01-25 RCSB 
# 
