data_5KV
#

_chem_comp.id                                   5KV
_chem_comp.name                                 "2-deoxy-6-O-sulfo-2-(sulfoamino)-beta-D-glucopyranose"
_chem_comp.type                                 "D-saccharide, beta linking"
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C6 H13 N O11 S2"
_chem_comp.mon_nstd_parent_comp_id              GCS
_chem_comp.pdbx_synonyms                        
;6-O-sulfo-N-sulfo-beta-D-glucosamine; 2-deoxy-6-O-sulfo-2-(sulfoamino)-beta-D-glucose;
2-deoxy-6-O-sulfo-2-(sulfoamino)-D-glucose; 2-deoxy-6-O-sulfo-2-(sulfoamino)-glucose
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2015-10-15
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       339.298
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    5KV
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5E9C
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  5KV  6-O-sulfo-N-sulfo-beta-D-glucosamine               PDB  ?  
2  5KV  "2-deoxy-6-O-sulfo-2-(sulfoamino)-beta-D-glucose"  PDB  ?  
3  5KV  "2-deoxy-6-O-sulfo-2-(sulfoamino)-D-glucose"       PDB  ?  
4  5KV  "2-deoxy-6-O-sulfo-2-(sulfoamino)-glucose"         PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
5KV  O4    O13  O  0  1  N  N  N  -19.601  14.685  58.823   0.834   2.969  -0.176  O4    5KV   1  
5KV  C3    C18  C  0  1  N  N  R  -21.763  15.504  59.494  -1.195   1.668  -0.387  C3    5KV   2  
5KV  C4    C19  C  0  1  N  N  S  -20.451  14.867  59.977   0.231   1.721   0.171  C4    5KV   3  
5KV  C5    C20  C  0  1  N  N  R  -20.858  13.569  60.712   1.048   0.573  -0.429  C5    5KV   4  
5KV  C2    C21  C  0  1  N  N  R  -22.637  15.836  60.701  -1.803   0.298  -0.076  C2    5KV   5  
5KV  C1    C22  C  0  1  N  N  R  -23.012  14.482  61.316  -0.908  -0.795  -0.666  C1    5KV   6  
5KV  O5    O25  O  0  1  N  N  N  -21.798  13.854  61.759   0.411  -0.670  -0.130  O5    5KV   7  
5KV  O1    O28  O  0  1  N  Y  N  -23.930  14.633  62.412  -1.439  -2.079  -0.332  O1    5KV   8  
5KV  N2    N29  N  0  1  N  N  N  -23.831  16.669  60.366  -3.140   0.209  -0.669  N2    5KV   9  
5KV  O3    O30  O  0  1  N  N  N  -21.551  16.687  58.733  -1.985   2.691   0.223  O3    5KV  10  
5KV  C6    C31  C  0  1  N  N  N  -19.745  12.784  61.406   2.456   0.582   0.169  C6    5KV  11  
5KV  O6    O32  O  0  1  N  N  N  -20.217  11.448  61.702   3.253  -0.414  -0.475  O6    5KV  12  
5KV  S33   S33  S  0  1  N  N  N  -19.838  10.628  62.983   4.682  -0.494   0.043  S33   5KV  13  
5KV  S34   S34  S  0  1  N  N  N  -23.681  18.290  60.540  -4.337  -0.630   0.109  S34   5KV  14  
5KV  O35   O35  O  0  1  N  N  N  -22.349  18.751  60.087  -3.778  -1.885   0.471  O35   5KV  15  
5KV  O36   O36  O  0  1  N  N  N  -23.918  18.729  61.939  -4.627   0.103   1.411  O36   5KV  16  
5KV  O37   O37  O  0  1  N  N  N  -24.698  18.961  59.700  -5.503  -0.501  -0.692  O37   5KV  17  
5KV  O38   O38  O  0  1  N  N  N  -18.490  10.093  62.813   5.096   0.843   0.287  O38   5KV  18  
5KV  O39   O39  O  0  1  N  N  N  -19.802  11.532  64.156   4.630  -1.182   1.400  O39   5KV  19  
5KV  O40   O40  O  0  1  N  N  N  -20.840   9.540  63.191   5.376  -1.377  -0.828  O40   5KV  20  
5KV  HO4   H1   H  0  1  N  Y  N  -18.780  14.291  59.093   1.740   3.070   0.146  HO4   5KV  21  
5KV  H3    H2   H  0  1  N  N  N  -22.295  14.763  58.880  -1.170   1.820  -1.466  H3    5KV  22  
5KV  H4    H3   H  0  1  N  N  N  -19.970  15.545  60.697   0.202   1.620   1.256  H4    5KV  23  
5KV  H5    H4   H  0  1  N  N  N  -21.332  12.903  59.976   1.110   0.698  -1.510  H5    5KV  24  
5KV  H2    H5   H  0  1  N  N  N  -22.021  16.383  61.430  -1.873   0.167   1.004  H2    5KV  25  
5KV  H1    H6   H  0  1  N  N  N  -23.477  13.867  60.532  -0.871  -0.688  -1.750  H1    5KV  26  
5KV  HO1   H7   H  0  1  N  Y  N  -24.141  13.778  62.769  -0.921  -2.820  -0.675  HO1   5KV  27  
5KV  HN21  H8   H  0  0  N  N  N  -24.582  16.371  60.956  -3.323   0.642  -1.518  HN21  5KV  28  
5KV  HO3   H9   H  0  1  N  Y  N  -21.844  17.441  59.231  -1.653   3.587   0.073  HO3   5KV  29  
5KV  H61   H10  H  0  1  N  N  N  -18.868  12.726  60.744   2.908   1.562   0.018  H61   5KV  30  
5KV  H62   H11  H  0  1  N  N  N  -19.466  13.291  62.341   2.399   0.368   1.236  H62   5KV  31  
5KV  H12   H12  H  0  1  N  N  N  -24.655  19.328  61.963  -5.319  -0.308   1.948  H12   5KV  32  
5KV  H13   H13  H  0  1  N  N  N  -18.923  11.550  64.516   5.495  -1.285   1.822  H13   5KV  33  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
5KV  O3   C3    SING  N  N   1  
5KV  O4   C4    SING  N  N   2  
5KV  C3   C4    SING  N  N   3  
5KV  C3   C2    SING  N  N   4  
5KV  O37  S34   DOUB  N  N   5  
5KV  C4   C5    SING  N  N   6  
5KV  O35  S34   DOUB  N  N   7  
5KV  N2   S34   SING  N  N   8  
5KV  N2   C2    SING  N  N   9  
5KV  S34  O36   SING  N  N  10  
5KV  C2   C1    SING  N  N  11  
5KV  C5   C6    SING  N  N  12  
5KV  C5   O5    SING  N  N  13  
5KV  C1   O5    SING  N  N  14  
5KV  C1   O1    SING  N  N  15  
5KV  C6   O6    SING  N  N  16  
5KV  O6   S33   SING  N  N  17  
5KV  O38  S33   DOUB  N  N  18  
5KV  S33  O40   DOUB  N  N  19  
5KV  S33  O39   SING  N  N  20  
5KV  O4   HO4   SING  N  N  21  
5KV  C3   H3    SING  N  N  22  
5KV  C4   H4    SING  N  N  23  
5KV  C5   H5    SING  N  N  24  
5KV  C2   H2    SING  N  N  25  
5KV  C1   H1    SING  N  N  26  
5KV  O1   HO1   SING  N  N  27  
5KV  N2   HN21  SING  N  N  28  
5KV  O3   HO3   SING  N  N  29  
5KV  C6   H61   SING  N  N  30  
5KV  C6   H62   SING  N  N  31  
5KV  O36  H12   SING  N  N  32  
5KV  O39  H13   SING  N  N  33  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
5KV  SMILES            ACDLabs               12.01  "OC1C(C(C(OC1COS(=O)(O)=O)O)NS(O)(=O)=O)O"  
5KV  InChI             InChI                 1.03   "InChI=1S/C6H13NO11S2/c8-4-2(1-17-20(14,15)16)18-6(10)3(5(4)9)7-19(11,12)13/h2-10H,1H2,(H,11,12,13)(H,14,15,16)/t2-,3-,4-,5-,6-/m1/s1"  
5KV  InChIKey          InChI                 1.03   DQTRACMFIGDHSN-QZABAPFNSA-N  
5KV  SMILES_CANONICAL  CACTVS                3.385  "O[C@@H]1O[C@H](CO[S](O)(=O)=O)[C@@H](O)[C@H](O)[C@H]1N[S](O)(=O)=O"  
5KV  SMILES            CACTVS                3.385  "O[CH]1O[CH](CO[S](O)(=O)=O)[CH](O)[CH](O)[CH]1N[S](O)(=O)=O"  
5KV  SMILES_CANONICAL  "OpenEye OEToolkits"  1.9.2  "C([C@@H]1[C@H]([C@@H]([C@H]([C@@H](O1)O)NS(=O)(=O)O)O)O)OS(=O)(=O)O"  
5KV  SMILES            "OpenEye OEToolkits"  1.9.2  "C(C1C(C(C(C(O1)O)NS(=O)(=O)O)O)O)OS(=O)(=O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
5KV  "SYSTEMATIC NAME"                      ACDLabs               12.01  "2-deoxy-6-O-sulfo-2-(sulfoamino)-beta-D-glucopyranose"  
5KV  "SYSTEMATIC NAME"                      "OpenEye OEToolkits"  1.9.2  "[(2R,3R,4R,5S,6R)-2,4,5-tris(oxidanyl)-6-(sulfooxymethyl)oxan-3-yl]sulfamic acid"  
5KV  "CONDENSED IUPAC CARBOHYDRATE SYMBOL"  GMML                  1.0    DGlcpNS[6S]b  
5KV  "COMMON NAME"                          GMML                  1.0    N-sulfo-6-sulfo-b-D-glucopyranose  
5KV  "IUPAC CARBOHYDRATE SYMBOL"            PDB-CARE              1.0    b-D-GlcpNSO36SO3  
#
_pdbx_chem_comp_related.comp_id            5KV
_pdbx_chem_comp_related.related_comp_id    GCS
_pdbx_chem_comp_related.relationship_type  "Carbohydrate core"
_pdbx_chem_comp_related.details            ?
#   #
loop_
_pdbx_chem_comp_atom_related.ordinal
_pdbx_chem_comp_atom_related.comp_id
_pdbx_chem_comp_atom_related.atom_id
_pdbx_chem_comp_atom_related.related_comp_id
_pdbx_chem_comp_atom_related.related_atom_id
_pdbx_chem_comp_atom_related.related_type
 1  5KV  C3    GCS  C3    "Carbohydrate core"  
 2  5KV  C4    GCS  C4    "Carbohydrate core"  
 3  5KV  C5    GCS  C5    "Carbohydrate core"  
 4  5KV  C2    GCS  C2    "Carbohydrate core"  
 5  5KV  C1    GCS  C1    "Carbohydrate core"  
 6  5KV  C6    GCS  C6    "Carbohydrate core"  
 7  5KV  N2    GCS  N2    "Carbohydrate core"  
 8  5KV  O4    GCS  O4    "Carbohydrate core"  
 9  5KV  O5    GCS  O5    "Carbohydrate core"  
10  5KV  O1    GCS  O1    "Carbohydrate core"  
11  5KV  O3    GCS  O3    "Carbohydrate core"  
12  5KV  O6    GCS  O6    "Carbohydrate core"  
13  5KV  HO4   GCS  HO4   "Carbohydrate core"  
14  5KV  H61   GCS  H61   "Carbohydrate core"  
15  5KV  H62   GCS  H62   "Carbohydrate core"  
16  5KV  H3    GCS  H3    "Carbohydrate core"  
17  5KV  H4    GCS  H4    "Carbohydrate core"  
18  5KV  H5    GCS  H5    "Carbohydrate core"  
19  5KV  H2    GCS  H2    "Carbohydrate core"  
20  5KV  H1    GCS  H1    "Carbohydrate core"  
21  5KV  HO1   GCS  HO1   "Carbohydrate core"  
22  5KV  HN21  GCS  HN21  "Carbohydrate core"  
23  5KV  HO3   GCS  HO3   "Carbohydrate core"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
5KV  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
5KV  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
5KV  "CARBOHYDRATE ANOMER"                  beta      PDB  ?  
5KV  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
5KV  "Create component"          2015-10-15  EBI   
5KV  "Initial release"           2015-11-18  RCSB  
5KV  "Other modification"        2020-07-03  RCSB  
5KV  "Modify parent residue"     2020-07-17  RCSB  
5KV  "Modify synonyms"           2020-07-17  RCSB  
5KV  "Modify internal type"      2020-07-17  RCSB  
5KV  "Modify linking type"       2020-07-17  RCSB  
5KV  "Modify atom id"            2020-07-17  RCSB  
5KV  "Modify component atom id"  2020-07-17  RCSB  
5KV  "Modify leaving atom flag"  2020-07-17  RCSB  
##
