data_38V
# 
_chem_comp.id                                    38V 
_chem_comp.name                                  
"[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3-[[(2R,3S,4R,5R)-5-(2-azanyl-6-oxidanylidene-3H-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-4-oxidanyl-oxolan-2-yl]methoxy-[[oxidanyl(phosphonooxy)phosphoryl]methyl]phosphinic acid" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H30 N10 O19 P4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2014-07-09 
_chem_comp.pdbx_modified_date                    2014-09-05 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        850.414 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     38V 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4TY0 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
38V C21 C1  C 0 1 N N R 89.088 44.241 -8.690 1.065   3.081  0.135  C21 38V 1  
38V C26 C2  C 0 1 Y N N 90.466 48.117 -6.331 1.047   7.930  0.825  C26 38V 2  
38V N01 N1  N 0 1 N N N 91.543 47.227 -1.533 -10.837 -2.656 3.534  N01 38V 3  
38V C02 C3  C 0 1 N N N 91.665 46.292 -2.623 -10.457 -1.885 2.468  C02 38V 4  
38V N03 N2  N 0 1 N N N 90.929 45.139 -2.600 -9.239  -2.103 1.906  N03 38V 5  
38V C04 C4  C 0 1 Y N N 91.039 44.281 -3.629 -8.822  -1.353 0.837  C04 38V 6  
38V C05 C5  C 0 1 Y N N 91.905 44.561 -4.690 -9.665  -0.367 0.338  C05 38V 7  
38V N06 N3  N 0 1 Y N N 91.827 43.527 -5.564 -9.027  0.224  -0.699 N06 38V 8  
38V C07 C6  C 0 1 Y N N 90.925 42.623 -5.068 -7.864  -0.339 -0.862 C07 38V 9  
38V N08 N4  N 0 1 Y N N 90.475 43.062 -3.884 -7.698  -1.321 0.070  N08 38V 10 
38V C09 C7  C 0 1 N N R 89.428 42.469 -3.055 -6.523  -2.184 0.219  C09 38V 11 
38V O10 O1  O 0 1 N N N 89.905 41.087 -2.997 -5.358  -1.549 -0.352 O10 38V 12 
38V C11 C8  C 0 1 N N R 88.710 40.244 -3.062 -4.425  -2.623 -0.604 C11 38V 13 
38V C12 C9  C 0 1 N N N 88.740 39.351 -4.366 -3.388  -2.195 -1.644 C12 38V 14 
38V O13 O2  O 0 1 N N N 88.777 40.210 -5.533 -2.570  -1.156 -1.101 O13 38V 15 
38V P14 P1  P 0 1 N N N 88.627 39.631 -6.949 -1.371  -0.465 -1.923 P14 38V 16 
38V O15 O3  O 0 1 N N N 87.188 39.154 -7.129 -1.974  0.332  -3.185 O15 38V 17 
38V O16 O4  O 0 1 N N N 89.491 38.483 -7.137 -0.434  -1.507 -2.400 O16 38V 18 
38V O17 O5  O 0 1 N N N 88.924 40.767 -8.050 -0.586  0.564  -0.965 O17 38V 19 
38V C18 C10 C 0 1 N N S 88.615 42.125 -7.828 0.595   1.258  -1.369 C18 38V 20 
38V C19 C11 C 0 1 N N R 89.708 42.902 -8.406 0.398   2.788  -1.233 C19 38V 21 
38V O20 O6  O 0 1 N N N 90.035 42.327 -9.665 -0.991  3.122  -1.206 O20 38V 22 
38V N22 N5  N 0 1 Y N N 89.140 45.099 -7.607 1.506   4.476  0.205  N22 38V 23 
38V C23 C12 C 0 1 Y N N 88.564 45.060 -6.384 2.755   4.942  -0.080 C23 38V 24 
38V N24 N6  N 0 1 Y N N 88.948 46.176 -5.707 2.797   6.232  0.091  N24 38V 25 
38V C25 C13 C 0 1 Y N N 89.789 46.907 -6.510 1.582   6.673  0.495  C25 38V 26 
38V N27 N7  N 0 1 N N N 90.331 48.830 -5.063 1.830   9.070  0.769  N27 38V 27 
38V N28 N8  N 0 1 Y N N 91.233 48.600 -7.341 -0.230  7.999  1.188  N28 38V 28 
38V C29 C14 C 0 1 Y N N 91.361 47.934 -8.503 -0.984  6.917  1.244  C29 38V 29 
38V N30 N9  N 0 1 Y N N 90.697 46.762 -8.709 -0.525  5.720  0.948  N30 38V 30 
38V C31 C15 C 0 1 Y N N 89.923 46.237 -7.721 0.738   5.553  0.571  C31 38V 31 
38V O32 O7  O 0 1 N N N 87.700 43.955 -8.965 2.198   2.187  0.155  O32 38V 32 
38V C33 C16 C 0 1 N N R 87.429 42.580 -8.667 1.761   0.941  -0.413 C33 38V 33 
38V C34 C17 C 0 1 N N N 86.075 42.480 -7.986 2.909   0.292  -1.190 C34 38V 34 
38V O35 O8  O 0 1 N N N 86.165 43.046 -6.672 3.944   -0.088 -0.281 O35 38V 35 
38V P36 P2  P 0 1 N N N 84.826 43.534 -5.931 5.307   -0.802 -0.753 P36 38V 36 
38V O37 O9  O 0 1 N N N 83.927 42.310 -5.715 4.983   -2.021 -1.528 O37 38V 37 
38V O38 O10 O 0 1 N N N 85.212 44.153 -4.653 6.152   0.212  -1.676 O38 38V 38 
38V C39 C18 C 0 1 N N N 84.034 44.845 -6.909 6.294   -1.257 0.711  C39 38V 39 
38V P40 P3  P 0 1 N N N 82.192 44.918 -6.753 7.838   -2.065 0.175  P40 38V 40 
38V O41 O11 O 0 1 N N N 81.729 46.345 -6.838 8.614   -1.133 -0.673 O41 38V 41 
38V O42 O12 O 0 1 N N N 81.834 44.273 -5.455 7.486   -3.391 -0.667 O42 38V 42 
38V O43 O13 O 0 1 N N N 81.635 44.044 -7.970 8.710   -2.466 1.468  O43 38V 43 
38V P44 P4  P 0 1 N N N 80.662 42.783 -7.870 10.134  -3.188 1.677  P44 38V 44 
38V O45 O14 O 0 1 N N N 79.253 43.182 -7.597 11.316  -2.121 1.439  O45 38V 45 
38V O46 O15 O 0 1 N N N 81.149 41.819 -6.819 10.227  -3.767 3.176  O46 38V 46 
38V O47 O16 O 0 1 N N N 80.741 42.193 -9.225 10.271  -4.299 0.709  O47 38V 47 
38V C48 C19 C 0 1 N N S 87.487 41.151 -3.109 -5.293  -3.779 -1.150 C48 38V 48 
38V O49 O17 O 0 1 N N N 86.876 41.271 -1.817 -4.817  -5.035 -0.663 O49 38V 49 
38V C50 C20 C 0 1 N N R 88.044 42.430 -3.597 -6.704  -3.483 -0.597 C50 38V 50 
38V O51 O18 O 0 1 N N N 87.316 43.577 -3.401 -7.144  -4.548 0.249  O51 38V 51 
38V C52 C21 C 0 1 N N N 92.653 45.756 -4.681 -10.967 -0.179 0.986  C52 38V 52 
38V O53 O19 O 0 1 N N N 93.434 46.046 -5.599 -11.744 0.674  0.586  O53 38V 53 
38V N54 N10 N 0 1 N N N 92.499 46.584 -3.637 -11.287 -0.966 2.024  N54 38V 54 
38V H1  H1  H 0 1 N N N 89.568 44.687 -9.574 0.380   2.854  0.952  H1  38V 55 
38V H2  H2  H 0 1 N N N 92.073 48.075 -1.540 -10.240 -3.341 3.875  H2  38V 56 
38V H3  H3  H 0 1 N N N 90.928 47.028 -0.770 -11.702 -2.516 3.950  H3  38V 57 
38V H4  H4  H 0 1 N N N 90.321 44.938 -1.832 -8.660  -2.794 2.264  H4  38V 58 
38V H5  H5  H 0 1 N N N 90.625 41.705 -5.552 -7.141  -0.068 -1.617 H5  38V 59 
38V H6  H6  H 0 1 N N N 89.429 42.919 -2.051 -6.353  -2.414 1.270  H6  38V 60 
38V H7  H7  H 0 1 N N N 88.652 39.588 -2.181 -3.933  -2.923 0.321  H7  38V 61 
38V H8  H8  H 0 1 N N N 87.839 38.722 -4.401 -2.764  -3.049 -1.908 H8  38V 62 
38V H9  H9  H 0 1 N N N 89.634 38.711 -4.352 -3.897  -1.828 -2.535 H9  38V 63 
38V H10 H10 H 0 1 N N N 87.184 38.224 -7.321 -2.598  1.032  -2.947 H10 38V 64 
38V H11 H11 H 0 1 N N N 88.460 42.359 -6.764 0.858   0.997  -2.394 H11 38V 65 
38V H12 H12 H 0 1 N N N 90.571 42.985 -7.729 0.909   3.319  -2.037 H12 38V 66 
38V H13 H13 H 0 1 N N N 90.432 41.474 -9.531 -1.167  4.057  -1.032 H13 38V 67 
38V H14 H14 H 0 1 N N N 87.915 44.282 -6.011 3.586   4.332  -0.398 H14 38V 68 
38V H15 H15 H 0 1 N N N 90.872 49.670 -5.093 2.759   9.007  0.499  H15 38V 69 
38V H16 H16 H 0 1 N N N 89.370 49.058 -4.910 1.449   9.932  0.999  H16 38V 70 
38V H17 H17 H 0 1 N N N 91.996 48.332 -9.280 -2.017  7.018  1.543  H17 38V 71 
38V H18 H18 H 0 1 N N N 87.404 41.991 -9.596 1.424   0.271  0.378  H18 38V 72 
38V H19 H19 H 0 1 N N N 85.326 43.031 -8.574 2.541   -0.591 -1.712 H19 38V 73 
38V H20 H20 H 0 1 N N N 85.778 41.424 -7.912 3.305   1.004  -1.914 H20 38V 74 
38V H21 H21 H 0 1 N N N 84.824 43.667 -3.935 6.399   1.034  -1.232 H21 38V 75 
38V H22 H22 H 0 1 N N N 84.282 44.680 -7.968 6.533   -0.359 1.281  H22 38V 76 
38V H23 H23 H 0 1 N N N 84.444 45.812 -6.582 5.722   -1.943 1.335  H23 38V 77 
38V H24 H24 H 0 1 N N N 81.369 44.896 -4.909 6.977   -4.047 -0.172 H24 38V 78 
38V H25 H25 H 0 1 N N N 78.712 42.972 -8.349 11.289  -1.363 2.040  H25 38V 79 
38V H26 H26 H 0 1 N N N 81.417 41.007 -7.233 11.061  -4.216 3.372  H26 38V 80 
38V H27 H27 H 0 1 N N N 86.768 40.753 -3.840 -5.298  -3.770 -2.240 H27 38V 81 
38V H28 H28 H 0 1 N N N 86.535 40.426 -1.548 -5.325  -5.796 -0.975 H28 38V 82 
38V H29 H29 H 0 1 N N N 88.158 42.307 -4.684 -7.410  -3.329 -1.413 H29 38V 83 
38V H30 H30 H 0 1 N N N 87.789 44.318 -3.761 -7.216  -5.402 -0.199 H30 38V 84 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
38V O20 C19 SING N N 1  
38V O47 P44 DOUB N N 2  
38V O32 C21 SING N N 3  
38V O32 C33 SING N N 4  
38V N30 C29 DOUB Y N 5  
38V N30 C31 SING Y N 6  
38V C21 C19 SING N N 7  
38V C21 N22 SING N N 8  
38V C33 C34 SING N N 9  
38V C33 C18 SING N N 10 
38V C29 N28 SING Y N 11 
38V C19 C18 SING N N 12 
38V O17 C18 SING N N 13 
38V O17 P14 SING N N 14 
38V C34 O35 SING N N 15 
38V O43 P44 SING N N 16 
38V O43 P40 SING N N 17 
38V P44 O45 SING N N 18 
38V P44 O46 SING N N 19 
38V C31 N22 SING Y N 20 
38V C31 C25 DOUB Y N 21 
38V N22 C23 SING Y N 22 
38V N28 C26 DOUB Y N 23 
38V O16 P14 DOUB N N 24 
38V O15 P14 SING N N 25 
38V P14 O13 SING N N 26 
38V C39 P40 SING N N 27 
38V C39 P36 SING N N 28 
38V O41 P40 DOUB N N 29 
38V P40 O42 SING N N 30 
38V O35 P36 SING N N 31 
38V C25 C26 SING Y N 32 
38V C25 N24 SING Y N 33 
38V C23 N24 DOUB Y N 34 
38V C26 N27 SING N N 35 
38V P36 O37 DOUB N N 36 
38V P36 O38 SING N N 37 
38V O53 C52 DOUB N N 38 
38V N06 C07 DOUB Y N 39 
38V N06 C05 SING Y N 40 
38V O13 C12 SING N N 41 
38V C07 N08 SING Y N 42 
38V C05 C52 SING N N 43 
38V C05 C04 DOUB Y N 44 
38V C52 N54 SING N N 45 
38V C12 C11 SING N N 46 
38V N08 C04 SING Y N 47 
38V N08 C09 SING N N 48 
38V N54 C02 DOUB N N 49 
38V C04 N03 SING N N 50 
38V C50 O51 SING N N 51 
38V C50 C48 SING N N 52 
38V C50 C09 SING N N 53 
38V C48 C11 SING N N 54 
38V C48 O49 SING N N 55 
38V C11 O10 SING N N 56 
38V C09 O10 SING N N 57 
38V C02 N03 SING N N 58 
38V C02 N01 SING N N 59 
38V C21 H1  SING N N 60 
38V N01 H2  SING N N 61 
38V N01 H3  SING N N 62 
38V N03 H4  SING N N 63 
38V C07 H5  SING N N 64 
38V C09 H6  SING N N 65 
38V C11 H7  SING N N 66 
38V C12 H8  SING N N 67 
38V C12 H9  SING N N 68 
38V O15 H10 SING N N 69 
38V C18 H11 SING N N 70 
38V C19 H12 SING N N 71 
38V O20 H13 SING N N 72 
38V C23 H14 SING N N 73 
38V N27 H15 SING N N 74 
38V N27 H16 SING N N 75 
38V C29 H17 SING N N 76 
38V C33 H18 SING N N 77 
38V C34 H19 SING N N 78 
38V C34 H20 SING N N 79 
38V O38 H21 SING N N 80 
38V C39 H22 SING N N 81 
38V C39 H23 SING N N 82 
38V O42 H24 SING N N 83 
38V O45 H25 SING N N 84 
38V O46 H26 SING N N 85 
38V C48 H27 SING N N 86 
38V O49 H28 SING N N 87 
38V C50 H29 SING N N 88 
38V O51 H30 SING N N 89 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
38V InChI            InChI                1.03  
;InChI=1S/C21H30N10O19P4/c22-15-9-16(25-3-24-15)30(4-26-9)20-13(34)14(8(48-20)2-45-51(36,37)6-52(38,39)50-53(40,41)42)49-54(43,44)46-1-7-11(32)12(33)19(47-7)31-5-27-10-17(31)28-21(23)29-18(10)35/h3-5,7-8,11-14,19-20,32-34H,1-2,6H2,(H,36,37)(H,38,39)(H,43,44)(H2,22,24,25)(H2,40,41,42)(H3,23,28,29,35)/t7-,8-,11-,12-,13-,14-,19-,20-/m1/s1
;
38V InChIKey         InChI                1.03  QFHKDAVOJDVDDK-XPWFQUROSA-N 
38V SMILES_CANONICAL CACTVS               3.385 "NC1=NC(=O)c2ncn([C@@H]3O[C@H](CO[P](O)(=O)O[C@H]4[C@@H](O)[C@@H](O[C@@H]4CO[P](O)(=O)C[P](O)(=O)O[P](O)(O)=O)n5cnc6c(N)ncnc56)[C@@H](O)[C@H]3O)c2N1" 
38V SMILES           CACTVS               3.385 "NC1=NC(=O)c2ncn([CH]3O[CH](CO[P](O)(=O)O[CH]4[CH](O)[CH](O[CH]4CO[P](O)(=O)C[P](O)(=O)O[P](O)(O)=O)n5cnc6c(N)ncnc56)[CH](O)[CH]3O)c2N1" 
38V SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(CP(=O)(O)OP(=O)(O)O)O)OP(=O)(O)OC[C@@H]4[C@H]([C@H]([C@@H](O4)n5cnc6c5NC(=NC6=O)N)O)O)O)N" 
38V SMILES           "OpenEye OEToolkits" 1.9.2 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(CP(=O)(O)OP(=O)(O)O)O)OP(=O)(O)OCC4C(C(C(O4)n5cnc6c5NC(=NC6=O)N)O)O)O)N" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
38V "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 
"[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3-[[(2R,3S,4R,5R)-5-(2-azanyl-6-oxidanylidene-3H-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-4-oxidanyl-oxolan-2-yl]methoxy-[[oxidanyl(phosphonooxy)phosphoryl]methyl]phosphinic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
38V "Create component"  2014-07-09 RCSB 
38V "Initial release"   2014-08-13 RCSB 
38V "Modify descriptor" 2014-09-05 RCSB 
# 
