data_Z4U
#

_chem_comp.id                                   Z4U
_chem_comp.name                                 "methyl 4-thio-alpha-D-xylopyranoside"
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C6 H12 O4 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2012-12-18
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       180.222
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    Z4U
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1XNK
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
Z4U  C1   C1   C  0  1  N  N  S  20.644  22.956   9.308  -1.268  -0.295  -0.027  C1   Z4U   1  
Z4U  O1   O1   O  0  1  N  N  N  21.358  22.241   8.307  -2.414   0.420   0.441  O1   Z4U   2  
Z4U  C6   C6   C  0  1  N  N  N  22.012  23.109   7.392  -3.512   0.421  -0.473  C6   Z4U   3  
Z4U  C2   C2   C  0  1  N  N  R  21.500  23.102  10.568  -0.259  -0.444   1.114  C2   Z4U   4  
Z4U  O2   O2   O  0  1  N  N  N  22.764  23.650  10.222   0.101   0.849   1.606  O2   Z4U   5  
Z4U  C3   C3   C  0  1  N  N  R  21.700  21.744  11.249   0.991  -1.158   0.589  C3   Z4U   6  
Z4U  O3   O3   O  0  1  N  N  N  22.347  21.940  12.498   0.644  -2.475   0.157  O3   Z4U   7  
Z4U  C4   C4   C  0  1  N  N  R  20.366  21.015  11.477   1.561  -0.365  -0.591  C4   Z4U   8  
Z4U  S4   S4   S  0  1  N  N  N  20.677  19.288  12.014   2.078   1.279  -0.024  S4   Z4U   9  
Z4U  C5   C5   C  0  1  N  N  N  19.544  20.992  10.181   0.481  -0.218  -1.666  C5   Z4U  10  
Z4U  O5   O5   O  0  1  N  N  N  19.410  22.323   9.634  -0.665   0.425  -1.104  O5   Z4U  11  
Z4U  H1   H1   H  0  1  N  N  N  20.433  23.969   8.935  -1.573  -1.282  -0.375  H1   Z4U  12  
Z4U  H21  H21  H  0  1  N  N  N  22.549  22.512   6.640  -3.828  -0.605  -0.662  H21  Z4U  13  
Z4U  H22  H22  H  0  1  N  N  N  21.266  23.744   6.892  -4.341   0.983  -0.045  H22  Z4U  14  
Z4U  H23  H23  H  0  1  N  N  N  22.728  23.743   7.936  -3.204   0.885  -1.411  H23  Z4U  15  
Z4U  H2   H2   H  0  1  N  N  N  20.979  23.771  11.269  -0.702  -1.029   1.919  H2   Z4U  16  
Z4U  HO2  HO2  H  0  1  N  Y  N  23.295  23.741  11.004  -0.644   1.360   1.950  HO2  Z4U  17  
Z4U  H3   H3   H  0  1  N  N  N  22.328  21.119  10.597   1.736  -1.219   1.382  H3   Z4U  18  
Z4U  HO3  HO3  H  0  1  N  Y  N  22.474  21.101  12.925   1.389  -2.985  -0.188  HO3  Z4U  19  
Z4U  H4   H4   H  0  1  N  N  N  19.797  21.503  12.282   2.419  -0.894  -1.005  H4   Z4U  20  
Z4U  H51  H51  H  0  1  N  N  N  20.049  20.349   9.445   0.867   0.382  -2.490  H51  Z4U  21  
Z4U  H52  H52  H  0  1  N  N  N  18.544  20.588  10.396   0.199  -1.205  -2.035  H52  Z4U  22  
Z4U  HS4  HS4  H  0  1  N  Y  N  19.470  18.828  12.158   2.549   1.852  -1.146  HS4  Z4U  23  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
Z4U  C1  O1   SING  N  N   1  
Z4U  C1  C2   SING  N  N   2  
Z4U  C1  O5   SING  N  N   3  
Z4U  C1  H1   SING  N  N   4  
Z4U  O1  C6   SING  N  N   5  
Z4U  C6  H21  SING  N  N   6  
Z4U  C6  H22  SING  N  N   7  
Z4U  C6  H23  SING  N  N   8  
Z4U  C2  O2   SING  N  N   9  
Z4U  C2  C3   SING  N  N  10  
Z4U  C2  H2   SING  N  N  11  
Z4U  O2  HO2  SING  N  N  12  
Z4U  C3  O3   SING  N  N  13  
Z4U  C3  C4   SING  N  N  14  
Z4U  C3  H3   SING  N  N  15  
Z4U  O3  HO3  SING  N  N  16  
Z4U  C4  S4   SING  N  N  17  
Z4U  C4  C5   SING  N  N  18  
Z4U  C4  H4   SING  N  N  19  
Z4U  C5  O5   SING  N  N  20  
Z4U  C5  H51  SING  N  N  21  
Z4U  C5  H52  SING  N  N  22  
Z4U  S4  HS4  SING  N  N  23  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
Z4U  SMILES            ACDLabs               12.01  "OC1C(O)C(S)COC1OC"  
Z4U  InChI             InChI                 1.03   "InChI=1S/C6H12O4S/c1-9-6-5(8)4(7)3(11)2-10-6/h3-8,11H,2H2,1H3/t3-,4+,5-,6+/m1/s1"  
Z4U  InChIKey          InChI                 1.03   YRXSBQDFUVBYAI-MOJAZDJTSA-N  
Z4U  SMILES_CANONICAL  CACTVS                3.370  "CO[C@H]1OC[C@@H](S)[C@H](O)[C@H]1O"  
Z4U  SMILES            CACTVS                3.370  "CO[CH]1OC[CH](S)[CH](O)[CH]1O"  
Z4U  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "CO[C@@H]1[C@@H]([C@H]([C@@H](CO1)S)O)O"  
Z4U  SMILES            "OpenEye OEToolkits"  1.7.6  "COC1C(C(C(CO1)S)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
Z4U  "SYSTEMATIC NAME"  ACDLabs               12.01  "methyl 4-thio-alpha-D-xylopyranoside"  
Z4U  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.6  "(2S,3R,4R,5R)-2-methoxy-5-sulfanyl-oxane-3,4-diol"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
Z4U  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
Z4U  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
Z4U  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
Z4U  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
Z4U  "Create component"          2012-12-18  RCSB  
Z4U  "Modify atom id"            2020-05-09  RCSB  
Z4U  "Modify component atom id"  2020-07-17  RCSB  
Z4U  "Initial release"           2020-07-29  RCSB  
##
