data_Z3U
#

_chem_comp.id                                   Z3U
_chem_comp.name                                 beta-D-Digitoxopyranose
_chem_comp.type                                 "D-saccharide, beta linking"
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C6 H12 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        
;beta-D-Digitoxose; 2,6-dideoxy-beta-D-ribo-hexopyranose; 2,6-dideoxy-beta-D-allopyranose;
2,6-dideoxy-beta-D-altropyranose; D-Digitoxose; Digitoxose
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2012-12-17
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       148.157
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    Z3U
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3B0W
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  Z3U  beta-D-Digitoxose                       PDB  ?  
2  Z3U  "2,6-dideoxy-beta-D-ribo-hexopyranose"  PDB  ?  
3  Z3U  "2,6-dideoxy-beta-D-allopyranose"       PDB  ?  
4  Z3U  "2,6-dideoxy-beta-D-altropyranose"      PDB  ?  
5  Z3U  D-Digitoxose                            PDB  ?  
6  Z3U  Digitoxose                              PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
Z3U  C1   C1   C  0  1  N  N  R  38.670  19.795  -6.436   1.603   0.042  -0.229  C1   Z3U   1  
Z3U  C2   C2   C  0  1  N  N  N  39.706  19.974  -7.562   1.114  -1.089   0.680  C2   Z3U   2  
Z3U  C3   C3   C  0  1  N  N  S  41.084  20.350  -6.996  -0.357  -1.383   0.370  C3   Z3U   3  
Z3U  C4   C4   C  0  1  N  N  S  40.964  21.598  -6.097  -1.172  -0.099   0.550  C4   Z3U   4  
Z3U  C5   C5   C  0  1  N  N  R  40.017  21.284  -4.922  -0.595   0.993  -0.354  C5   Z3U   5  
Z3U  C6   C6   C  0  1  N  N  N  39.810  22.549  -4.075  -1.367   2.296  -0.136  C6   Z3U   6  
Z3U  O1   O1   O  0  1  N  Y  N  37.375  19.805  -7.069   2.958   0.361   0.093  O1   Z3U   7  
Z3U  O3   O3   O  0  1  N  N  N  41.603  19.241  -6.251  -0.479  -1.842  -0.978  O3   Z3U   8  
Z3U  O4   O4   O  0  1  N  N  N  42.257  22.002  -5.617  -2.534  -0.344   0.193  O4   Z3U   9  
Z3U  O5   O5   O  0  1  N  N  N  38.744  20.828  -5.418   0.783   1.196  -0.034  O5   Z3U  10  
Z3U  H1   H1   H  0  1  N  N  N  38.840  18.814  -5.969   1.541  -0.276  -1.270  H1   Z3U  11  
Z3U  HO1  H1O  H  0  1  N  Y  N  36.699  19.697  -6.410   3.334   1.071  -0.445  HO1  Z3U  12  
Z3U  H21  H21  H  0  1  N  N  N  39.793  19.031  -8.122   1.710  -1.983   0.501  H21  Z3U  13  
Z3U  H22  H22  H  0  1  N  N  N  39.366  20.772  -8.238   1.213  -0.787   1.722  H22  Z3U  14  
Z3U  H3   H3   H  0  1  N  N  N  41.755  20.587  -7.835  -0.726  -2.150   1.050  H3   Z3U  15  
Z3U  HO3  H3O  H  0  1  N  Y  N  42.456  19.467  -5.898   0.019  -2.649  -1.166  HO3  Z3U  16  
Z3U  H4   H4   H  0  1  N  N  N  40.519  22.410  -6.691  -1.120   0.222   1.590  H4   Z3U  17  
Z3U  HO4  H4O  H  0  1  N  Y  N  42.165  22.770  -5.066  -2.962  -1.030   0.723  HO4  Z3U  18  
Z3U  H5   H5   H  0  1  N  N  N  40.478  20.508  -4.294  -0.685   0.688  -1.397  H5   Z3U  19  
Z3U  H62  H61  H  0  1  N  N  N  40.779  22.890  -3.682  -2.418   2.141  -0.379  H62  Z3U  20  
Z3U  H61  H62  H  0  1  N  N  N  39.134  22.323  -3.237  -1.276   2.602   0.906  H61  Z3U  21  
Z3U  H63  H63  H  0  1  N  N  N  39.369  23.340  -4.699  -0.956   3.074  -0.780  H63  Z3U  22  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
Z3U  C1  C2   SING  N  N   1  
Z3U  C1  O1   SING  N  N   2  
Z3U  C1  O5   SING  N  N   3  
Z3U  C1  H1   SING  N  N   4  
Z3U  C2  C3   SING  N  N   5  
Z3U  C2  H21  SING  N  N   6  
Z3U  C2  H22  SING  N  N   7  
Z3U  C3  O3   SING  N  N   8  
Z3U  C3  C4   SING  N  N   9  
Z3U  C3  H3   SING  N  N  10  
Z3U  C4  O4   SING  N  N  11  
Z3U  C4  H4   SING  N  N  12  
Z3U  C4  C5   SING  N  N  13  
Z3U  C5  H5   SING  N  N  14  
Z3U  C5  C6   SING  N  N  15  
Z3U  C5  O5   SING  N  N  16  
Z3U  C6  H61  SING  N  N  17  
Z3U  C6  H62  SING  N  N  18  
Z3U  C6  H63  SING  N  N  19  
Z3U  O1  HO1  SING  N  N  20  
Z3U  O3  HO3  SING  N  N  21  
Z3U  O4  HO4  SING  N  N  22  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
Z3U  SMILES            ACDLabs               12.01  "OC1C(OC(O)CC1O)C"  
Z3U  InChI             InChI                 1.03   "InChI=1S/C6H12O4/c1-3-6(9)4(7)2-5(8)10-3/h3-9H,2H2,1H3/t3-,4+,5-,6-/m1/s1"  
Z3U  InChIKey          InChI                 1.03   FDWRIIDFYSUTDP-JGWLITMVSA-N  
Z3U  SMILES_CANONICAL  CACTVS                3.370  "C[C@H]1O[C@@H](O)C[C@H](O)[C@@H]1O"  
Z3U  SMILES            CACTVS                3.370  "C[CH]1O[CH](O)C[CH](O)[CH]1O"  
Z3U  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "C[C@@H]1[C@H]([C@H](C[C@@H](O1)O)O)O"  
Z3U  SMILES            "OpenEye OEToolkits"  1.7.6  "CC1C(C(CC(O1)O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
Z3U  "SYSTEMATIC NAME"                      ACDLabs               12.01  "2,6-dideoxy-beta-D-ribo-hexopyranose"  
Z3U  "SYSTEMATIC NAME"                      "OpenEye OEToolkits"  1.7.6  "(2R,4S,5S,6R)-6-methyloxane-2,4,5-triol"  
Z3U  "CONDENSED IUPAC CARBOHYDRATE SYMBOL"  GMML                  1.0    DDigb  
Z3U  "COMMON NAME"                          GMML                  1.0    b-D-Digitoxopyranose  
Z3U  "SNFG CARBOHYDRATE SYMBOL"             GMML                  1.0    Dig  
Z3U  "IUPAC CARBOHYDRATE SYMBOL"            PDB-CARE              1.0    "b-D-2,6-deoxy-Allp"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
Z3U  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
Z3U  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
Z3U  "CARBOHYDRATE ANOMER"                  beta      PDB  ?  
Z3U  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
Z3U  "Create component"          2012-12-17  RCSB  
Z3U  "Modify atom id"            2013-04-14  RCSB  
Z3U  "Other modification"        2019-08-12  RCSB  
Z3U  "Other modification"        2019-12-19  RCSB  
Z3U  "Other modification"        2020-06-03  RCSB  
Z3U  "Other modification"        2020-06-10  RCSB  
Z3U  "Other modification"        2020-07-03  RCSB  
Z3U  "Modify atom id"            2020-07-17  RCSB  
Z3U  "Modify component atom id"  2020-07-17  RCSB  
Z3U  "Initial release"           2020-07-29  RCSB  
##
