data_YUU
# 
_chem_comp.id                                    YUU 
_chem_comp.name                                  "7-[(1~{S})-1-[2-(aminomethyl)-6-oxidanylidene-5-oxa-7-azaspiro[3.4]octan-7-yl]ethyl]-3-[1-(2-azanylethyl)pyrazol-4-yl]-1~{H}-indole-2-carboxylic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H28 N6 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-21 
_chem_comp.pdbx_modified_date                    2024-07-05 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        452.506 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YUU 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8PH2 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YUU C19  C1  C 0 1 Y N N N N N -22.373 -12.223 12.039 0.032  1.581  0.600  C19  YUU 1  
YUU C17  C2  C 0 1 Y N N N N N -21.576 -14.260 11.005 -1.431 2.861  -0.855 C17  YUU 2  
YUU C18  C3  C 0 1 Y N N N N N -21.853 -12.876 10.929 -1.220 1.765  -0.014 C18  YUU 3  
YUU C16  C4  C 0 1 Y N N N N N -21.857 -14.921 12.203 -0.419 3.751  -1.077 C16  YUU 4  
YUU C15  C5  C 0 1 Y N N N N N -22.389 -14.253 13.307 0.819  3.575  -0.473 C15  YUU 5  
YUU C14  C6  C 0 1 Y N N N N N -22.655 -12.870 13.280 1.049  2.503  0.359  C14  YUU 6  
YUU C10  C7  C 0 1 N N N N N N -27.827 -14.270 14.236 5.760  -1.169 0.031  C10  YUU 7  
YUU C12  C8  C 0 1 N N N N N N -25.500 -11.461 13.541 3.445  1.248  -0.986 C12  YUU 8  
YUU C21  C9  C 0 1 Y N N N N N -22.220 -10.727 10.446 -1.291 -0.127 1.266  C21  YUU 9  
YUU C22  C10 C 0 1 N N N N N N -22.421 -9.375  9.794  -1.728 -1.348 1.941  C22  YUU 10 
YUU C01  C11 C 0 1 N N N N N N -22.717 -12.499 15.859 3.184  3.634  0.914  C01  YUU 11 
YUU C02  C12 C 0 1 N N S N N N -23.170 -12.096 14.410 2.398  2.325  1.007  C02  YUU 12 
YUU C04  C13 C 0 1 N N N N N N -25.421 -13.438 14.951 3.658  0.036  0.946  C04  YUU 13 
YUU C05  C14 C 0 1 N N N N N N -26.876 -13.068 14.617 4.328  -0.699 -0.219 C05  YUU 14 
YUU C06  C15 C 0 1 N N N N N N -27.599 -12.759 15.817 3.931  -2.165 -0.392 C06  YUU 15 
YUU C07  C16 C 0 1 N N N N N N -28.735 -13.660 15.187 5.398  -2.425 -0.782 C07  YUU 16 
YUU C08  C17 C 0 1 N N N N N N -29.386 -14.558 16.318 5.967  -3.719 -0.196 C08  YUU 17 
YUU C25  C18 C 0 1 Y N N N N N -21.762 -11.914 9.880  -2.068 0.651  0.425  C25  YUU 18 
YUU C26  C19 C 0 1 Y N N N N N -21.272 -12.163 8.483  -3.477 0.407  0.045  C26  YUU 19 
YUU C27  C20 C 0 1 Y N N N N N -20.427 -11.347 7.702  -3.953 -0.659 -0.687 C27  YUU 20 
YUU C29  C21 C 0 1 N N N N N N -19.587 -11.549 5.377  -6.195 -1.409 -1.512 C29  YUU 21 
YUU C30  C22 C 0 1 N N N N N N -20.386 -10.501 4.657  -7.312 -1.849 -0.564 C30  YUU 22 
YUU C33  C23 C 0 1 Y N N N N N -21.563 -13.262 7.719  -4.584 1.219  0.370  C33  YUU 23 
YUU N03  N1  N 0 1 N N N N N N -24.702 -12.252 14.398 3.135  1.263  0.319  N03  YUU 24 
YUU N09  N2  N 0 1 N N N N N N -30.639 -15.349 15.470 5.670  -4.838 -1.101 N09  YUU 25 
YUU N20  N3  N 0 1 Y N N N N N -22.545 -10.915 11.703 -0.031 0.437  1.360  N20  YUU 26 
YUU N28  N4  N 0 1 Y N N N N N -20.296 -11.987 6.569  -5.285 -0.502 -0.808 N28  YUU 27 
YUU N31  N5  N 0 1 N N N N N N -19.758 -9.297  4.055  -8.224 -2.759 -1.271 N31  YUU 28 
YUU N32  N6  N 0 1 Y N N N N N -20.959 -13.127 6.534  -5.653 0.672  -0.142 N32  YUU 29 
YUU O11  O1  O 0 1 N N N N N N -26.814 -11.992 13.621 4.127  0.157  -1.368 O11  YUU 30 
YUU O13  O2  O 0 1 N N N N N N -25.200 -10.540 12.854 3.137  2.139  -1.752 O13  YUU 31 
YUU O23  O3  O 0 1 N N N N N N -22.368 -8.363  10.502 -2.863 -1.758 1.782  O23  YUU 32 
YUU O24  O4  O 0 1 N N N N N N -22.812 -9.395  8.618  -0.873 -2.021 2.739  O24  YUU 33 
YUU H171 H1  H 0 0 N N N N N N -21.159 -14.791 10.162 -2.391 3.004  -1.329 H171 YUU 34 
YUU H161 H2  H 0 0 N N N N N N -21.657 -15.980 12.277 -0.583 4.597  -1.727 H161 YUU 35 
YUU H151 H3  H 0 0 N N N N N N -22.602 -14.812 14.206 1.610  4.287  -0.658 H151 YUU 36 
YUU H102 H4  H 0 0 N N N N N N -28.176 -14.283 13.193 6.515  -0.543 -0.444 H102 YUU 37 
YUU H101 H5  H 0 0 N N N N N N -27.457 -15.269 14.511 5.976  -1.374 1.080  H101 YUU 38 
YUU H011 H6  H 0 0 N N N N N N -23.187 -11.826 16.591 3.318  3.905  -0.133 H011 YUU 39 
YUU H013 H7  H 0 0 N N N N N N -23.023 -13.535 16.064 2.636  4.425  1.427  H013 YUU 40 
YUU H012 H8  H 0 0 N N N N N N -21.623 -12.418 15.937 4.160  3.506  1.383  H012 YUU 41 
YUU H021 H9  H 0 0 N N N N N N -22.929 -11.033 14.263 2.265  2.055  2.055  H021 YUU 42 
YUU H041 H10 H 0 0 N N N N N N -25.266 -13.537 16.036 2.845  -0.560 1.360  H041 YUU 43 
YUU H042 H11 H 0 0 N N N N N N -25.114 -14.368 14.451 4.388  0.280  1.718  H042 YUU 44 
YUU H061 H12 H 0 0 N N N N N N -27.154 -13.145 16.746 3.633  -2.650 0.538  H061 YUU 45 
YUU H062 H13 H 0 0 N N N N N N -27.859 -11.698 15.948 3.226  -2.334 -1.205 H062 YUU 46 
YUU H071 H14 H 0 0 N N N N N N -29.499 -13.036 14.701 5.589  -2.323 -1.850 H071 YUU 47 
YUU H082 H15 H 0 0 N N N N N N -28.660 -15.279 16.722 7.046  -3.622 -0.080 H082 YUU 48 
YUU H081 H16 H 0 0 N N N N N N -29.785 -13.942 17.137 5.512  -3.908 0.776  H081 YUU 49 
YUU H271 H17 H 0 0 N N N N N N -19.985 -10.401 7.979  -3.365 -1.471 -1.090 H271 YUU 50 
YUU H292 H18 H 0 0 N N N N N N -19.431 -12.410 4.710  -5.642 -2.285 -1.854 H292 YUU 51 
YUU H291 H19 H 0 0 N N N N N N -18.613 -11.128 5.667  -6.628 -0.895 -2.371 H291 YUU 52 
YUU H301 H20 H 0 0 N N N N N N -20.902 -11.020 3.836  -6.879 -2.364 0.294  H301 YUU 53 
YUU H302 H21 H 0 0 N N N N N N -21.127 -10.130 5.380  -7.865 -0.974 -0.223 H302 YUU 54 
YUU H331 H22 H 0 0 N N N N N N -22.177 -14.097 8.023  -4.552 2.134  0.944  H331 YUU 55 
YUU H091 H23 H 0 0 N N N N N N -31.132 -15.957 16.093 6.036  -5.705 -0.736 H091 YUU 56 
YUU H1   H24 H 0 1 N N N N N N -31.271 -14.669 15.098 4.679  -4.909 -1.276 H1   YUU 57 
YUU H201 H26 H 0 0 N N N N N N -22.871 -10.202 12.324 0.700  0.080  1.890  H201 YUU 58 
YUU H2   H27 H 0 1 N N N N N N -20.463 -8.732  3.627  -8.972 -3.063 -0.666 H2   YUU 59 
YUU H311 H28 H 0 0 N N N N N N -19.296 -8.770  4.768  -8.589 -2.327 -2.107 H311 YUU 60 
YUU H3   H30 H 0 1 N N N N N N -23.061 -8.518  8.352  -1.252 -2.815 3.140  H3   YUU 61 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YUU C19 C18  DOUB Y N 1  
YUU C19 C14  SING Y N 2  
YUU C19 N20  SING Y N 3  
YUU C17 C18  SING Y N 4  
YUU C17 C16  DOUB Y N 5  
YUU C18 C25  SING Y N 6  
YUU C16 C15  SING Y N 7  
YUU C15 C14  DOUB Y N 8  
YUU C14 C02  SING N N 9  
YUU C10 C05  SING N N 10 
YUU C10 C07  SING N N 11 
YUU C12 N03  SING N N 12 
YUU C12 O11  SING N N 13 
YUU C12 O13  DOUB N N 14 
YUU C21 C22  SING N N 15 
YUU C21 C25  DOUB Y N 16 
YUU C21 N20  SING Y N 17 
YUU C22 O23  DOUB N N 18 
YUU C22 O24  SING N N 19 
YUU C01 C02  SING N N 20 
YUU C02 N03  SING N N 21 
YUU C04 C05  SING N N 22 
YUU C04 N03  SING N N 23 
YUU C05 C06  SING N N 24 
YUU C05 O11  SING N N 25 
YUU C06 C07  SING N N 26 
YUU C07 C08  SING N N 27 
YUU C25 C26  SING N N 28 
YUU C26 C27  DOUB Y N 29 
YUU C26 C33  SING Y N 30 
YUU C27 N28  SING Y N 31 
YUU C29 C30  SING N N 32 
YUU C29 N28  SING N N 33 
YUU C30 N31  SING N N 34 
YUU C33 N32  DOUB Y N 35 
YUU N28 N32  SING Y N 36 
YUU C08 N09  SING N N 37 
YUU C17 H171 SING N N 38 
YUU C16 H161 SING N N 39 
YUU C15 H151 SING N N 40 
YUU C10 H102 SING N N 41 
YUU C10 H101 SING N N 42 
YUU C01 H011 SING N N 43 
YUU C01 H013 SING N N 44 
YUU C01 H012 SING N N 45 
YUU C02 H021 SING N N 46 
YUU C04 H041 SING N N 47 
YUU C04 H042 SING N N 48 
YUU C06 H061 SING N N 49 
YUU C06 H062 SING N N 50 
YUU C07 H071 SING N N 51 
YUU C08 H082 SING N N 52 
YUU C08 H081 SING N N 53 
YUU C27 H271 SING N N 54 
YUU C29 H292 SING N N 55 
YUU C29 H291 SING N N 56 
YUU C30 H301 SING N N 57 
YUU C30 H302 SING N N 58 
YUU C33 H331 SING N N 59 
YUU N09 H091 SING N N 60 
YUU N09 H1   SING N N 61 
YUU N20 H201 SING N N 62 
YUU N31 H2   SING N N 63 
YUU N31 H311 SING N N 64 
YUU O24 H3   SING N N 65 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YUU InChI            InChI                1.06  "InChI=1S/C23H28N6O4/c1-13(29-12-23(33-22(29)32)7-14(8-23)9-25)16-3-2-4-17-18(20(21(30)31)27-19(16)17)15-10-26-28(11-15)6-5-24/h2-4,10-11,13-14,27H,5-9,12,24-25H2,1H3,(H,30,31)/t13-,14-,23-/m0/s1" 
YUU InChIKey         InChI                1.06  WNYMZZVVYNTADX-QIPPXTIRSA-N                                                                                                                                                                          
YUU SMILES_CANONICAL CACTVS               3.385 "C[C@H](N1C[C@]2(C[C@@H](CN)C2)OC1=O)c3cccc4c3[nH]c(C(O)=O)c4c5cnn(CCN)c5"                                                                                                                           
YUU SMILES           CACTVS               3.385 "C[CH](N1C[C]2(C[CH](CN)C2)OC1=O)c3cccc4c3[nH]c(C(O)=O)c4c5cnn(CCN)c5"                                                                                                                               
YUU SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](c1cccc2c1[nH]c(c2c3cnn(c3)CCN)C(=O)O)N4CC5(CC(C5)CN)OC4=O"                                                                                                                                  
YUU SMILES           "OpenEye OEToolkits" 2.0.7 "CC(c1cccc2c1[nH]c(c2c3cnn(c3)CCN)C(=O)O)N4CC5(CC(C5)CN)OC4=O"                                                                                                                                       
# 
_pdbx_chem_comp_identifier.comp_id           YUU 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "7-[(1~{S})-1-[2-(aminomethyl)-6-oxidanylidene-5-oxa-7-azaspiro[3.4]octan-7-yl]ethyl]-3-[1-(2-azanylethyl)pyrazol-4-yl]-1~{H}-indole-2-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YUU "Create component" 2023-06-21 PDBE 
YUU "Initial release"  2024-07-10 RCSB 
# 
