data_YBU
# 
_chem_comp.id                                    YBU 
_chem_comp.name                                  "(5-phenyl-1,3,4-oxadiazol-2-yl)methanimine" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C9 H7 N3 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-13 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        173.171 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YBU 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8PDH 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YBU C1 C1 C 0 1 N N N N N N -32.619 10.565 4.313 3.618  -0.835 -0.001 C1 YBU 1  
YBU C2 C2 C 0 1 Y N N N N N -33.906 10.064 4.764 2.311  -0.164 0.000  C2 YBU 2  
YBU N1 N1 N 0 1 Y N N N N N -34.196 9.611  5.943 2.104  1.135  0.002  N1 YBU 3  
YBU N2 N2 N 0 1 Y N N N N N -35.551 9.267  5.921 0.837  1.364  0.002  N2 YBU 4  
YBU C3 C3 C 0 1 Y N N N N N -35.988 9.561  4.730 0.186  0.219  0.000  C3 YBU 5  
YBU C4 C4 C 0 1 Y N N N N N -37.325 9.400  4.160 -1.281 0.048  -0.000 C4 YBU 6  
YBU C5 C5 C 0 1 Y N N N N N -37.494 9.303  2.775 -1.837 -1.233 0.003  C5 YBU 7  
YBU C6 C6 C 0 1 Y N N N N N -38.758 9.160  2.229 -3.208 -1.385 0.003  C6 YBU 8  
YBU C7 C7 C 0 1 Y N N N N N -39.850 9.084  3.045 -4.031 -0.273 -0.000 C7 YBU 9  
YBU C8 C8 C 0 1 Y N N N N N -39.691 9.184  4.417 -3.486 0.999  -0.004 C8 YBU 10 
YBU C9 C9 C 0 1 Y N N N N N -38.436 9.326  4.985 -2.117 1.166  0.002  C9 YBU 11 
YBU O1 O1 O 0 1 Y N N N N N -34.992 10.050 3.929 1.103  -0.767 -0.007 O1 YBU 12 
YBU N3 N3 N 0 1 N N N N N N -31.535 10.607 5.057 4.707  -0.133 0.001  N3 YBU 13 
YBU H1 H1 H 0 1 N N N N N N -32.547 10.927 3.298 3.671  -1.914 0.002  H1 YBU 14 
YBU H2 H2 H 0 1 N N N N N N -36.631 9.340  2.126 -1.196 -2.102 0.005  H2 YBU 15 
YBU H3 H3 H 0 1 N N N N N N -38.880 9.109  1.157 -3.640 -2.375 0.005  H3 YBU 16 
YBU H4 H4 H 0 1 N N N N N N -40.834 8.946  2.622 -5.104 -0.398 -0.000 H4 YBU 17 
YBU H5 H5 H 0 1 N N N N N N -40.561 9.151  5.056 -4.135 1.863  -0.008 H5 YBU 18 
YBU H6 H6 H 0 1 N N N N N N -38.324 9.378  6.058 -1.693 2.159  0.003  H6 YBU 19 
YBU H7 H7 H 0 1 N N N N N N -30.754 10.986 4.560 5.570  -0.576 0.001  H7 YBU 20 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YBU C6 C5 DOUB Y N 1  
YBU C6 C7 SING Y N 2  
YBU C5 C4 SING Y N 3  
YBU C7 C8 DOUB Y N 4  
YBU O1 C3 SING Y N 5  
YBU O1 C2 SING Y N 6  
YBU C4 C3 SING N N 7  
YBU C4 C9 DOUB Y N 8  
YBU C1 C2 SING N N 9  
YBU C1 N3 DOUB N N 10 
YBU C8 C9 SING Y N 11 
YBU C3 N2 DOUB Y N 12 
YBU C2 N1 DOUB Y N 13 
YBU N2 N1 SING Y N 14 
YBU C1 H1 SING N N 15 
YBU C5 H2 SING N N 16 
YBU C6 H3 SING N N 17 
YBU C7 H4 SING N N 18 
YBU C8 H5 SING N N 19 
YBU C9 H6 SING N N 20 
YBU N3 H7 SING N N 21 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YBU InChI            InChI                1.06  "InChI=1S/C9H7N3O/c10-6-8-11-12-9(13-8)7-4-2-1-3-5-7/h1-6,10H/b10-6-" 
YBU InChIKey         InChI                1.06  YVGIABMOZOZHSD-POHAHGRESA-N                                           
YBU SMILES_CANONICAL CACTVS               3.385 "N=Cc1oc(nn1)c2ccccc2"                                                
YBU SMILES           CACTVS               3.385 "N=Cc1oc(nn1)c2ccccc2"                                                
YBU SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C\c1nnc(o1)c2ccccc2"                                           
YBU SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)c2nnc(o2)C=N"                                              
# 
_pdbx_chem_comp_identifier.comp_id           YBU 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(5-phenyl-1,3,4-oxadiazol-2-yl)methanimine" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YBU "Create component" 2023-06-13 PDBE 
YBU "Initial release"  2023-06-28 RCSB 
YBU "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            YBU 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C1 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
