data_Y2U
# 
_chem_comp.id                                    Y2U 
_chem_comp.name                                  "2-{[(2S)-5-chloro-2,3-dihydro-1H-inden-2-yl]amino}-6-(oxetan-3-yl)-6,7-dihydro-5H-pyrrolo[3,4-d]pyrimidin-5-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C18 H17 Cl N4 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-09 
_chem_comp.pdbx_modified_date                    2024-12-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        356.806 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     Y2U 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7G3S 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
Y2U C11  C1  C  0 1 Y N N N N N -14.297 7.632  47.148 0.495  -0.610 0.066  C11  Y2U 1  
Y2U C13  C2  C  0 1 N N R N N N -13.176 5.882  45.841 -1.932 -0.356 -0.267 C13  Y2U 2  
Y2U C15  C3  C  0 1 Y N N N N N -12.412 4.159  44.411 -4.355 -0.495 -0.175 C15  Y2U 3  
Y2U C16  C4  C  0 1 Y N N N N N -12.020 5.362  43.847 -3.993 0.588  0.604  C16  Y2U 4  
Y2U C17  C5  C  0 1 N N N N N N -12.718 6.508  44.524 -2.494 0.586  0.818  C17  Y2U 5  
Y2U C18  C6  C  0 1 Y N N N N N -11.087 5.369  42.818 -4.963 1.468  1.055  C18  Y2U 6  
Y2U C19  C7  C  0 1 Y N N N N N -10.548 4.183  42.353 -6.289 1.268  0.729  C19  Y2U 7  
Y2U C20  C8  C  0 1 Y N N N N N -10.944 2.998  42.932 -6.652 0.184  -0.051 C20  Y2U 8  
Y2U C21  C9  C  0 1 Y N N N N N -11.858 2.970  43.968 -5.685 -0.695 -0.502 C21  Y2U 9  
Y2U C24  C10 C  0 1 Y N N N N N -15.397 9.209  48.333 1.860  1.058  -0.752 C24  Y2U 10 
Y2U C25  C11 C  0 1 Y N N N N N -14.202 9.844  48.666 2.972  0.356  -0.274 C25  Y2U 11 
Y2U O1   O1  O  0 1 N N N N N N -14.558 11.810 50.044 4.940  1.588  -0.814 O1   Y2U 12 
Y2U C2   C12 C  0 1 N N N N N N -13.833 11.033 49.463 4.419  0.613  -0.308 C2   Y2U 13 
Y2U N3   N1  N  0 1 N N N N N N -12.493 11.136 49.396 5.084  -0.385 0.301  N3   Y2U 14 
Y2U C4   C13 C  0 1 N N N N N N -11.749 12.218 50.069 6.538  -0.469 0.459  C4   Y2U 15 
Y2U C5   C14 C  0 1 N N N N N N -10.950 11.733 51.289 7.309  -0.485 -0.874 C5   Y2U 16 
Y2U O6   O2  O  0 1 N N N N N N -9.690  12.015 50.630 8.212  0.438  -0.233 O6   Y2U 17 
Y2U C7   C15 C  0 1 N N N N N N -10.384 12.690 49.547 7.216  0.892  0.705  C7   Y2U 18 
Y2U C8   C16 C  0 1 N N N N N N -11.874 10.068 48.604 4.113  -1.376 0.781  C8   Y2U 19 
Y2U C9   C17 C  0 1 Y N N N N N -13.044 9.262  48.146 2.754  -0.859 0.389  C9   Y2U 20 
Y2U N10  N2  N  0 1 Y N N N N N -13.074 8.147  47.398 1.527  -1.304 0.538  N10  Y2U 21 
Y2U N12  N3  N  0 1 N N N N N N -14.353 6.517  46.393 -0.780 -1.106 0.240  N12  Y2U 22 
Y2U C14  C18 C  0 1 N N N N N N -13.408 4.403  45.508 -3.124 -1.298 -0.537 C14  Y2U 23 
Y2U CL22 CL1 CL 0 0 N N N N N N -10.265 1.500  42.362 -8.319 -0.072 -0.463 CL22 Y2U 24 
Y2U N23  N4  N  0 1 Y N N N N N -15.474 8.111  47.580 0.657  0.546  -0.563 N23  Y2U 25 
Y2U H34  H1  H  0 1 N N N N N N -12.349 5.949  46.564 -1.668 0.202  -1.165 H34  Y2U 26 
Y2U H38  H2  H  0 1 N N N N N N -13.575 6.858  43.931 -2.255 0.205  1.811  H38  Y2U 27 
Y2U H37  H3  H  0 1 N N N N N N -12.028 7.346  44.701 -2.093 1.592  0.692  H37  Y2U 28 
Y2U H39  H4  H  0 1 N N N N N N -10.780 6.307  42.378 -4.680 2.315  1.663  H39  Y2U 29 
Y2U H40  H5  H  0 1 N N N N N N -9.828  4.186  41.548 -7.043 1.956  1.082  H40  Y2U 30 
Y2U H41  H6  H  0 1 N N N N N N -12.137 2.033  44.426 -5.969 -1.541 -1.110 H41  Y2U 31 
Y2U H42  H7  H  0 1 N N N N N N -16.317 9.632  48.708 1.984  1.999  -1.268 H42  Y2U 32 
Y2U H26  H8  H  0 1 N N N N N N -12.395 13.070 50.327 6.846  -1.249 1.156  H26  Y2U 33 
Y2U H27  H9  H  0 1 N N N N N N -11.119 12.333 52.195 7.759  -1.449 -1.112 H27  Y2U 34 
Y2U H28  H10 H  0 1 N N N N N N -11.099 10.668 51.521 6.756  -0.053 -1.709 H28  Y2U 35 
Y2U H30  H11 H  0 1 N N N N N N -10.133 12.300 48.549 6.635  1.744  0.353  H30  Y2U 36 
Y2U H29  H12 H  0 1 N N N N N N -10.261 13.783 49.556 7.593  1.020  1.720  H29  Y2U 37 
Y2U H32  H13 H  0 1 N N N N N N -11.321 10.482 47.748 4.298  -2.341 0.309  H32  Y2U 38 
Y2U H31  H14 H  0 1 N N N N N N -11.195 9.462  49.222 4.180  -1.470 1.865  H31  Y2U 39 
Y2U H33  H15 H  0 1 N N N N N N -14.802 5.824  46.957 -0.914 -1.950 0.698  H33  Y2U 40 
Y2U H35  H16 H  0 1 N N N N N N -13.205 3.763  46.379 -3.153 -1.580 -1.590 H35  Y2U 41 
Y2U H36  H17 H  0 1 N N N N N N -14.436 4.231  45.157 -3.054 -2.187 0.091  H36  Y2U 42 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
Y2U O1  C2   DOUB N N 1  
Y2U C2  N3   SING N N 2  
Y2U C2  C25  SING N N 3  
Y2U N3  C4   SING N N 4  
Y2U N3  C8   SING N N 5  
Y2U C4  C5   SING N N 6  
Y2U C4  C7   SING N N 7  
Y2U C5  O6   SING N N 8  
Y2U O6  C7   SING N N 9  
Y2U C8  C9   SING N N 10 
Y2U C9  N10  DOUB Y N 11 
Y2U C9  C25  SING Y N 12 
Y2U N10 C11  SING Y N 13 
Y2U C11 N12  SING N N 14 
Y2U C11 N23  DOUB Y N 15 
Y2U N12 C13  SING N N 16 
Y2U C13 C14  SING N N 17 
Y2U C13 C17  SING N N 18 
Y2U C14 C15  SING N N 19 
Y2U C15 C16  DOUB Y N 20 
Y2U C15 C21  SING Y N 21 
Y2U C16 C17  SING N N 22 
Y2U C16 C18  SING Y N 23 
Y2U C18 C19  DOUB Y N 24 
Y2U C19 C20  SING Y N 25 
Y2U C20 C21  DOUB Y N 26 
Y2U C20 CL22 SING N N 27 
Y2U N23 C24  SING Y N 28 
Y2U C24 C25  DOUB Y N 29 
Y2U C13 H34  SING N N 30 
Y2U C17 H38  SING N N 31 
Y2U C17 H37  SING N N 32 
Y2U C18 H39  SING N N 33 
Y2U C19 H40  SING N N 34 
Y2U C21 H41  SING N N 35 
Y2U C24 H42  SING N N 36 
Y2U C4  H26  SING N N 37 
Y2U C5  H27  SING N N 38 
Y2U C5  H28  SING N N 39 
Y2U C7  H30  SING N N 40 
Y2U C7  H29  SING N N 41 
Y2U C8  H32  SING N N 42 
Y2U C8  H31  SING N N 43 
Y2U N12 H33  SING N N 44 
Y2U C14 H35  SING N N 45 
Y2U C14 H36  SING N N 46 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
Y2U SMILES           ACDLabs              12.01 "Clc1ccc2CC(Cc2c1)Nc1nc2CN(C3COC3)C(=O)c2cn1"                                                                                                             
Y2U InChI            InChI                1.06  "InChI=1S/C18H17ClN4O2/c19-12-2-1-10-4-13(5-11(10)3-12)21-18-20-6-15-16(22-18)7-23(17(15)24)14-8-25-9-14/h1-3,6,13-14H,4-5,7-9H2,(H,20,21,22)/t13-/m0/s1" 
Y2U InChIKey         InChI                1.06  IRYDHCPYJSJTMH-ZDUSSCGKSA-N                                                                                                                               
Y2U SMILES_CANONICAL CACTVS               3.385 "Clc1ccc2C[C@H](Cc2c1)Nc3ncc4C(=O)N(Cc4n3)C5COC5"                                                                                                         
Y2U SMILES           CACTVS               3.385 "Clc1ccc2C[CH](Cc2c1)Nc3ncc4C(=O)N(Cc4n3)C5COC5"                                                                                                          
Y2U SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1Cl)C[C@@H](C2)Nc3ncc4c(n3)CN(C4=O)C5COC5"                                                                                                      
Y2U SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1Cl)CC(C2)Nc3ncc4c(n3)CN(C4=O)C5COC5"                                                                                                           
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
Y2U "SYSTEMATIC NAME" ACDLabs              12.01 "2-{[(2S)-5-chloro-2,3-dihydro-1H-inden-2-yl]amino}-6-(oxetan-3-yl)-6,7-dihydro-5H-pyrrolo[3,4-d]pyrimidin-5-one" 
Y2U "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-[[(2~{R})-5-chloranyl-2,3-dihydro-1~{H}-inden-2-yl]amino]-6-(oxetan-3-yl)-7~{H}-pyrrolo[3,4-d]pyrimidin-5-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
Y2U "Create component" 2023-06-09 RCSB 
Y2U "Initial release"  2024-12-18 RCSB 
# 
