data_XGU
#

_chem_comp.id                                   XGU
_chem_comp.name                                 "2-AMINO-9-(2,3-DIDEOXY-6-O-PHOSPHONO-BETA-D-ERYTHRO-HEXOPYRANOSYL)-1,9-DIHYDRO-6H-PURIN-6-ONE"
_chem_comp.type                                 "DNA LINKING"
_chem_comp.pdbx_type                            ATOMN
_chem_comp.formula                              "C11 H16 N5 O7 P"
_chem_comp.mon_nstd_parent_comp_id              DG
_chem_comp.pdbx_synonyms                        "2',3'-DI-DEOXY-BETA-D-GLUCOPYRANOSYL GUANINE"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2006-06-20
_chem_comp.pdbx_modified_date                   2021-03-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       361.248
_chem_comp.one_letter_code                      G
_chem_comp.three_letter_code                    XGU
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       2H9S
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
XGU  OP3     O3P     O  0  1  N  Y  N   9.708   8.606  17.067   4.757  -1.725   1.100  OP3     XGU   1  
XGU  P       P       P  0  1  N  N  N  10.525   7.581  17.948   4.593  -1.278  -0.438  P       XGU   2  
XGU  OP1     O1P     O  0  1  N  N  N   9.679   7.059  19.042   5.627  -0.275  -0.774  OP1     XGU   3  
XGU  OP2     O2P     O  0  1  N  N  N  11.120   6.573  17.035   4.763  -2.565  -1.391  OP2     XGU   4  
XGU  "O6'"   "O6'"   O  0  1  N  N  N  11.749   8.357  18.646   3.132  -0.637  -0.658  "O6'"   XGU   5  
XGU  "C6'"   "C6'"   C  0  1  N  N  N  12.883   8.696  17.863   3.085   0.560   0.121  "C6'"   XGU   6  
XGU  "C5'"   "C5'"   C  0  1  N  N  R  13.903   9.433  18.722   1.716   1.222  -0.044  "C5'"   XGU   7  
XGU  "O5'"   "O5'"   O  0  1  N  N  N  13.243  10.432  19.523   0.710   0.370   0.501  "O5'"   XGU   8  
XGU  "C4'"   "C4'"   C  0  1  N  N  S  14.649   8.519  19.686   1.709   2.565   0.689  "C4'"   XGU   9  
XGU  "O4'"   "O4'"   O  0  1  N  N  N  15.298   7.480  18.965   2.736   3.406   0.159  "O4'"   XGU  10  
XGU  "C3'"   "C3'"   C  0  1  N  N  N  15.667   9.334  20.498   0.344   3.235   0.491  "C3'"   XGU  11  
XGU  "C2'"   "C2'"   C  0  1  N  N  N  14.996  10.555  21.162  -0.751   2.252   0.919  "C2'"   XGU  12  
XGU  "C1'"   "C1'"   C  0  1  N  N  R  14.155  11.315  20.143  -0.558   0.933   0.169  "C1'"   XGU  13  
XGU  N9      N9      N  0  1  Y  N  N  13.320  12.330  20.736  -1.620  -0.003   0.547  N9      XGU  14  
XGU  C8      C8      C  0  1  Y  N  N  13.143  12.604  22.085  -1.544  -0.962   1.516  C8      XGU  15  
XGU  N7      N7      N  0  1  Y  N  N  12.216  13.519  22.199  -2.670  -1.610   1.584  N7      XGU  16  
XGU  C4      C4      C  0  1  Y  N  N  12.487  13.124  20.017  -2.870  -0.075  -0.006  C4      XGU  17  
XGU  C5      C5      C  0  1  Y  N  N  11.805  13.901  20.934  -3.533  -1.109   0.666  C5      XGU  18  
XGU  N3      N3      N  0  1  N  N  N  12.278  13.246  18.664  -3.502   0.598  -0.974  N3      XGU  19  
XGU  C2      C2      C  0  1  N  N  N  11.395  14.124  18.217  -4.739   0.306  -1.308  C2      XGU  20  
XGU  N2      N2      N  0  1  N  N  N  11.163  14.218  16.897  -5.347   1.024  -2.308  N2      XGU  21  
XGU  N1      N1      N  0  1  N  N  N  10.652  14.905  19.097  -5.438  -0.685  -0.687  N1      XGU  22  
XGU  C6      C6      C  0  1  N  N  N  10.853  14.821  20.477  -4.864  -1.412   0.297  C6      XGU  23  
XGU  O6      O6      O  0  1  N  N  N  10.151  15.509  21.296  -5.479  -2.304   0.856  O6      XGU  24  
XGU  HOP3    3HOP    H  0  0  N  N  N   9.544   9.396  17.569   4.066  -2.377   1.277  HOP3    XGU  25  
XGU  HOP2    2HOP    H  0  0  N  N  N  11.247   6.959  16.176   5.649  -2.917  -1.229  HOP2    XGU  26  
XGU  "H6'1"  "1H6'"  H  0  0  N  N  N  12.570   9.347  17.033   3.863   1.244  -0.218  "H6'1"  XGU  27  
XGU  "H6'2"  "2H6'"  H  0  0  N  N  N  13.338   7.777  17.464   3.247   0.317   1.171  "H6'2"  XGU  28  
XGU  "H5'"   "H5'"   H  0  1  N  N  N  14.623   9.873  18.017   1.518   1.386  -1.103  "H5'"   XGU  29  
XGU  "H4'"   "H4'"   H  0  1  N  N  N  13.931   8.063  20.383   1.884   2.402   1.752  "H4'"   XGU  30  
XGU  "H4T'"  "H4T'"  H  0  0  N  N  N  15.443   7.759  18.068   2.690   4.242   0.644  "H4T'"  XGU  31  
XGU  "H3'1"  "1H3'"  H  0  0  N  N  N  16.453   9.693  19.817   0.213   3.494  -0.560  "H3'1"  XGU  32  
XGU  "H3'2"  "2H3'"  H  0  0  N  N  N  16.095   8.692  21.282   0.287   4.136   1.102  "H3'2"  XGU  33  
XGU  "H2'1"  "1H2'"  H  0  0  N  N  N  15.776  11.224  21.553  -1.729   2.669   0.678  "H2'1"  XGU  34  
XGU  "H2'2"  "2H2'"  H  0  0  N  N  N  14.348  10.211  21.981  -0.683   2.075   1.992  "H2'2"  XGU  35  
XGU  "H1'"   "H1'"   H  0  1  N  N  N  14.881  11.768  19.452  -0.603   1.116  -0.905  "H1'"   XGU  36  
XGU  H8      H8      H  0  1  N  N  N  13.679  12.141  22.900  -0.679  -1.153   2.133  H8      XGU  37  
XGU  HN21    1HN2    H  0  0  N  N  N  11.615  13.664  16.198  -4.863   1.735  -2.757  HN21    XGU  38  
XGU  HN22    2HN2    H  0  0  N  N  N  10.475  14.920  16.712  -6.258   0.818  -2.568  HN22    XGU  39  
XGU  HN1     HN1     H  0  1  N  N  N   9.964  15.535  18.737  -6.350  -0.875  -0.957  HN1     XGU  40  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
XGU  OP3    P       SING  N  N   1  
XGU  OP3    HOP3    SING  N  N   2  
XGU  P      OP1     DOUB  N  N   3  
XGU  P      OP2     SING  N  N   4  
XGU  P      "O6'"   SING  N  N   5  
XGU  OP2    HOP2    SING  N  N   6  
XGU  "O6'"  "C6'"   SING  N  N   7  
XGU  "C6'"  "C5'"   SING  N  N   8  
XGU  "C6'"  "H6'1"  SING  N  N   9  
XGU  "C6'"  "H6'2"  SING  N  N  10  
XGU  "C5'"  "O5'"   SING  N  N  11  
XGU  "C5'"  "C4'"   SING  N  N  12  
XGU  "C5'"  "H5'"   SING  N  N  13  
XGU  "O5'"  "C1'"   SING  N  N  14  
XGU  "C4'"  "O4'"   SING  N  N  15  
XGU  "C4'"  "C3'"   SING  N  N  16  
XGU  "C4'"  "H4'"   SING  N  N  17  
XGU  "O4'"  "H4T'"  SING  N  N  18  
XGU  "C3'"  "C2'"   SING  N  N  19  
XGU  "C3'"  "H3'1"  SING  N  N  20  
XGU  "C3'"  "H3'2"  SING  N  N  21  
XGU  "C2'"  "C1'"   SING  N  N  22  
XGU  "C2'"  "H2'1"  SING  N  N  23  
XGU  "C2'"  "H2'2"  SING  N  N  24  
XGU  "C1'"  N9      SING  N  N  25  
XGU  "C1'"  "H1'"   SING  N  N  26  
XGU  N9     C8      SING  Y  N  27  
XGU  N9     C4      SING  Y  N  28  
XGU  C8     N7      DOUB  Y  N  29  
XGU  C8     H8      SING  N  N  30  
XGU  N7     C5      SING  Y  N  31  
XGU  C4     C5      DOUB  Y  N  32  
XGU  C4     N3      SING  N  N  33  
XGU  C5     C6      SING  N  N  34  
XGU  N3     C2      DOUB  N  N  35  
XGU  C2     N2      SING  N  N  36  
XGU  C2     N1      SING  N  N  37  
XGU  N2     HN21    SING  N  N  38  
XGU  N2     HN22    SING  N  N  39  
XGU  N1     C6      SING  N  N  40  
XGU  N1     HN1     SING  N  N  41  
XGU  C6     O6      DOUB  N  N  42  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
XGU  SMILES            ACDLabs               10.04  "O=C2NC(=Nc1n(cnc12)C3OC(C(O)CC3)COP(=O)(O)O)N"  
XGU  SMILES_CANONICAL  CACTVS                3.341  "NC1=Nc2n(cnc2C(=O)N1)[C@H]3CC[C@H](O)[C@@H](CO[P](O)(O)=O)O3"  
XGU  SMILES            CACTVS                3.341  "NC1=Nc2n(cnc2C(=O)N1)[CH]3CC[CH](O)[CH](CO[P](O)(O)=O)O3"  
XGU  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "c1nc2c(n1[C@H]3CC[C@@H]([C@H](O3)COP(=O)(O)O)O)N=C(NC2=O)N"  
XGU  SMILES            "OpenEye OEToolkits"  1.5.0  "c1nc2c(n1C3CCC(C(O3)COP(=O)(O)O)O)N=C(NC2=O)N"  
XGU  InChI             InChI                 1.03   "InChI=1S/C11H16N5O7P/c12-11-14-9-8(10(18)15-11)13-4-16(9)7-2-1-5(17)6(23-7)3-22-24(19,20)21/h4-7,17H,1-3H2,(H2,19,20,21)(H3,12,14,15,18)/t5-,6+,7+/m0/s1"  
XGU  InChIKey          InChI                 1.03   AHHGXXBXJPSOJX-RRKCRQDMSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
XGU  "SYSTEMATIC NAME"  ACDLabs               10.04  "2-amino-9-(2,3-dideoxy-6-O-phosphono-beta-D-erythro-hexopyranosyl)-1,9-dihydro-6H-purin-6-one"  
XGU  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "[(2R,3S,6R)-6-(2-amino-6-oxo-1H-purin-9-yl)-3-hydroxy-oxan-2-yl]methyl dihydrogen phosphate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
XGU  "Create component"   2006-06-20  RCSB  
XGU  "Modify descriptor"  2011-06-04  RCSB  
XGU  "Modify synonyms"    2021-03-13  RCSB  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     XGU
_pdbx_chem_comp_synonyms.name        "2',3'-DI-DEOXY-BETA-D-GLUCOPYRANOSYL GUANINE"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
##
