data_X4U
# 
_chem_comp.id                                    X4U 
_chem_comp.name                                  Citarinostat 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H26 Cl N5 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "2-[(2-chlorophenyl)(phenyl)amino]-N-[7-(hydroxyamino)-7-oxoheptyl]pyrimidine-5-carboxamide" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-05-31 
_chem_comp.pdbx_modified_date                    2023-11-01 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        467.948 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     X4U 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8SZU 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
X4U C01  C1  C  0 1 Y N N N N N 34.938 -57.507 38.204 7.592   2.597  0.337  C01  X4U 1  
X4U C02  C2  C  0 1 Y N N N N N 35.271 -56.534 37.272 7.298   1.867  1.474  C02  X4U 2  
X4U C03  C3  C  0 1 Y N N N N N 35.567 -55.247 37.706 6.240   0.980  1.473  C03  X4U 3  
X4U C04  C4  C  0 1 Y N N N N N 35.535 -54.963 39.064 5.470   0.821  0.328  C04  X4U 4  
X4U C05  C5  C  0 1 Y N N N N N 35.204 -55.934 39.998 5.767   1.556  -0.813 C05  X4U 5  
X4U C06  C6  C  0 1 Y N N N N N 34.905 -57.216 39.559 6.827   2.441  -0.805 C06  X4U 6  
X4U C08  C7  C  0 1 Y N N N N N 36.971 -53.373 40.409 4.636   -1.453 0.418  C08  X4U 7  
X4U C09  C8  C  0 1 Y N N N N N 36.731 -53.177 41.755 4.690   -2.066 1.663  C09  X4U 8  
X4U C10  C9  C  0 1 Y N N N N N 37.801 -52.935 42.608 4.920   -3.425 1.754  C10  X4U 9  
X4U C11  C10 C  0 1 Y N N N N N 39.095 -52.891 42.108 5.097   -4.176 0.606  C11  X4U 10 
X4U C12  C11 C  0 1 Y N N N N N 39.337 -53.085 40.766 5.044   -3.570 -0.636 C12  X4U 11 
X4U C13  C12 C  0 1 Y N N N N N 38.271 -53.314 39.913 4.814   -2.210 -0.734 C13  X4U 12 
X4U C15  C13 C  0 1 Y N N N N N 35.020 -52.521 39.134 3.102   0.394  0.225  C15  X4U 13 
X4U C17  C14 C  0 1 Y N N N N N 33.295 -51.674 37.903 1.680   2.181  -0.067 C17  X4U 14 
X4U C18  C15 C  0 1 Y N N N N N 33.587 -50.426 38.416 0.588   1.308  0.034  C18  X4U 15 
X4U C19  C16 C  0 1 Y N N N N N 34.641 -50.274 39.293 0.844   -0.055 0.231  C19  X4U 16 
X4U C21  C17 C  0 1 N N N N N N 32.792 -49.222 37.979 -0.795  1.811  -0.071 C21  X4U 17 
X4U C24  C18 C  0 1 N N N N N N 31.564 -48.098 36.216 -3.206  1.456  -0.076 C24  X4U 18 
X4U C25  C19 C  0 1 N N N N N N 30.333 -48.473 35.429 -4.185  0.290  0.070  C25  X4U 19 
X4U C26  C20 C  0 1 N N N N N N 29.830 -47.201 34.749 -5.620  0.811  -0.039 C26  X4U 20 
X4U C27  C21 C  0 1 N N N N N N 28.330 -47.017 34.946 -6.599  -0.355 0.107  C27  X4U 21 
X4U C28  C22 C  0 1 N N N N N N 27.883 -45.831 34.092 -8.033  0.167  -0.002 C28  X4U 22 
X4U C29  C23 C  0 1 N N N N N N 28.449 -44.532 34.649 -9.012  -1.000 0.144  C29  X4U 23 
X4U C30  C24 C  0 1 N N N N N N 27.954 -43.302 33.889 -10.425 -0.486 0.036  C30  X4U 24 
X4U N07  N1  N  0 1 N N N N N N 35.839 -53.627 39.537 4.397   -0.077 0.323  N07  X4U 25 
X4U N16  N2  N  0 1 Y N N N N N 34.019 -52.711 38.288 2.901   1.691  0.032  N16  X4U 26 
X4U N20  N3  N  0 1 Y N N N N N 35.332 -51.342 39.625 2.095   -0.465 0.320  N20  X4U 27 
X4U N23  N4  N  0 1 N N N N N N 32.291 -49.270 36.641 -1.833  0.956  0.028  N23  X4U 28 
X4U N32  N5  N  0 1 N N N N N N 26.833 -43.460 33.026 -11.462 -1.341 0.136  N32  X4U 29 
X4U O22  O1  O  0 1 N N N N N N 32.644 -48.261 38.666 -0.999  2.997  -0.248 O22  X4U 30 
X4U O31  O2  O  0 1 N N N N N N 28.460 -42.231 34.004 -10.628 0.697  -0.140 O31  X4U 31 
X4U O33  O3  O  0 1 N N N N N N 26.354 -42.357 32.330 -12.790 -0.858 0.035  O33  X4U 32 
X4U CL14 CL1 CL 0 0 N N N N N N 38.604 -53.559 38.186 4.748   -1.450 -2.293 CL14 X4U 33 
X4U H1   H1  H  0 1 N N N N N N 34.701 -58.506 37.869 8.417   3.293  0.342  H1   X4U 34 
X4U H2   H2  H  0 1 N N N N N N 35.300 -56.774 36.220 7.897   1.990  2.364  H2   X4U 35 
X4U H3   H3  H  0 1 N N N N N N 35.819 -54.476 36.993 6.011   0.410  2.362  H3   X4U 36 
X4U H4   H4  H  0 1 N N N N N N 35.179 -55.696 41.051 5.171   1.434  -1.705 H4   X4U 37 
X4U H5   H5  H  0 1 N N N N N N 34.647 -57.986 40.272 7.056   3.016  -1.690 H5   X4U 38 
X4U H6   H6  H  0 1 N N N N N N 35.723 -53.211 42.140 4.552   -1.480 2.560  H6   X4U 39 
X4U H7   H7  H  0 1 N N N N N N 37.625 -52.781 43.662 4.962   -3.901 2.722  H7   X4U 40 
X4U H8   H8  H  0 1 N N N N N N 39.921 -52.703 42.778 5.278   -5.238 0.680  H8   X4U 41 
X4U H9   H9  H  0 1 N N N N N N 40.347 -53.059 40.384 5.183   -4.159 -1.530 H9   X4U 42 
X4U H10  H10 H  0 1 N N N N N N 32.487 -51.801 37.198 1.524   3.238  -0.224 H10  X4U 43 
X4U H11  H11 H  0 1 N N N N N N 34.892 -49.304 39.696 0.029   -0.760 0.314  H11  X4U 44 
X4U H12  H12 H  0 1 N N N N N N 32.219 -47.480 35.584 -3.347  1.930  -1.048 H12  X4U 45 
X4U H13  H13 H  0 1 N N N N N N 31.261 -47.523 37.103 -3.388  2.185  0.714  H13  X4U 46 
X4U H14  H14 H  0 1 N N N N N N 29.561 -48.871 36.104 -4.003  -0.439 -0.720 H14  X4U 47 
X4U H15  H15 H  0 1 N N N N N N 30.585 -49.231 34.673 -4.044  -0.184 1.041  H15  X4U 48 
X4U H16  H16 H  0 1 N N N N N N 30.044 -47.263 33.672 -5.802  1.540  0.751  H16  X4U 49 
X4U H17  H17 H  0 1 N N N N N N 30.356 -46.335 35.178 -5.761  1.285  -1.011 H17  X4U 50 
X4U H18  H18 H  0 1 N N N N N N 28.115 -46.816 36.006 -6.416  -1.084 -0.683 H18  X4U 51 
X4U H19  H19 H  0 1 N N N N N N 27.798 -47.926 34.630 -6.457  -0.829 1.078  H19  X4U 52 
X4U H20  H20 H  0 1 N N N N N N 26.784 -45.777 34.093 -8.216  0.895  0.787  H20  X4U 53 
X4U H21  H21 H  0 1 N N N N N N 28.242 -45.970 33.062 -8.175  0.640  -0.974 H21  X4U 54 
X4U H22  H22 H  0 1 N N N N N N 29.546 -44.569 34.583 -8.830  -1.729 -0.646 H22  X4U 55 
X4U H23  H23 H  0 1 N N N N N N 28.148 -44.440 35.703 -8.871  -1.474 1.115  H23  X4U 56 
X4U H24  H24 H  0 1 N N N N N N 32.434 -50.059 36.043 -1.670  0.011  0.169  H24  X4U 57 
X4U H25  H25 H  0 1 N N N N N N 26.396 -44.353 32.922 -11.300 -2.287 0.276  H25  X4U 58 
X4U H26  H26 H  0 1 N N N N N N 26.879 -41.595 32.544 -13.465 -1.545 0.118  H26  X4U 59 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
X4U O33  N32 SING N N 1  
X4U N32  C30 SING N N 2  
X4U C30  O31 DOUB N N 3  
X4U C30  C29 SING N N 4  
X4U C28  C29 SING N N 5  
X4U C28  C27 SING N N 6  
X4U C26  C27 SING N N 7  
X4U C26  C25 SING N N 8  
X4U C25  C24 SING N N 9  
X4U C24  N23 SING N N 10 
X4U N23  C21 SING N N 11 
X4U C02  C03 DOUB Y N 12 
X4U C02  C01 SING Y N 13 
X4U C03  C04 SING Y N 14 
X4U C17  N16 DOUB Y N 15 
X4U C17  C18 SING Y N 16 
X4U C21  C18 SING N N 17 
X4U C21  O22 DOUB N N 18 
X4U CL14 C13 SING N N 19 
X4U C01  C06 DOUB Y N 20 
X4U N16  C15 SING Y N 21 
X4U C18  C19 DOUB Y N 22 
X4U C04  N07 SING N N 23 
X4U C04  C05 DOUB Y N 24 
X4U C15  N07 SING N N 25 
X4U C15  N20 DOUB Y N 26 
X4U C19  N20 SING Y N 27 
X4U N07  C08 SING N N 28 
X4U C06  C05 SING Y N 29 
X4U C13  C08 DOUB Y N 30 
X4U C13  C12 SING Y N 31 
X4U C08  C09 SING Y N 32 
X4U C12  C11 DOUB Y N 33 
X4U C09  C10 DOUB Y N 34 
X4U C11  C10 SING Y N 35 
X4U C01  H1  SING N N 36 
X4U C02  H2  SING N N 37 
X4U C03  H3  SING N N 38 
X4U C05  H4  SING N N 39 
X4U C06  H5  SING N N 40 
X4U C09  H6  SING N N 41 
X4U C10  H7  SING N N 42 
X4U C11  H8  SING N N 43 
X4U C12  H9  SING N N 44 
X4U C17  H10 SING N N 45 
X4U C19  H11 SING N N 46 
X4U C24  H12 SING N N 47 
X4U C24  H13 SING N N 48 
X4U C25  H14 SING N N 49 
X4U C25  H15 SING N N 50 
X4U C26  H16 SING N N 51 
X4U C26  H17 SING N N 52 
X4U C27  H18 SING N N 53 
X4U C27  H19 SING N N 54 
X4U C28  H20 SING N N 55 
X4U C28  H21 SING N N 56 
X4U C29  H22 SING N N 57 
X4U C29  H23 SING N N 58 
X4U N23  H24 SING N N 59 
X4U N32  H25 SING N N 60 
X4U O33  H26 SING N N 61 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
X4U SMILES           ACDLabs              12.01 "ONC(=O)CCCCCCNC(=O)c1cnc(nc1)N(c1ccccc1Cl)c1ccccc1"                                                                                                                                    
X4U InChI            InChI                1.06  "InChI=1S/C24H26ClN5O3/c25-20-12-7-8-13-21(20)30(19-10-4-3-5-11-19)24-27-16-18(17-28-24)23(32)26-15-9-2-1-6-14-22(31)29-33/h3-5,7-8,10-13,16-17,33H,1-2,6,9,14-15H2,(H,26,32)(H,29,31)" 
X4U InChIKey         InChI                1.06  VLIUIBXPEDFJRF-UHFFFAOYSA-N                                                                                                                                                             
X4U SMILES_CANONICAL CACTVS               3.385 "ONC(=O)CCCCCCNC(=O)c1cnc(nc1)N(c2ccccc2)c3ccccc3Cl"                                                                                                                                    
X4U SMILES           CACTVS               3.385 "ONC(=O)CCCCCCNC(=O)c1cnc(nc1)N(c2ccccc2)c3ccccc3Cl"                                                                                                                                    
X4U SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)N(c2ccccc2Cl)c3ncc(cn3)C(=O)NCCCCCCC(=O)NO"                                                                                                                                  
X4U SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)N(c2ccccc2Cl)c3ncc(cn3)C(=O)NCCCCCCC(=O)NO"                                                                                                                                  
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
X4U "SYSTEMATIC NAME" ACDLabs              12.01 "2-[(2-chlorophenyl)(phenyl)amino]-N-[7-(hydroxyamino)-7-oxoheptyl]pyrimidine-5-carboxamide"                
X4U "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-[(2-chlorophenyl)-phenyl-amino]-~{N}-[7-(oxidanylamino)-7-oxidanylidene-heptyl]pyrimidine-5-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
X4U "Create component" 2023-05-31 RCSB 
X4U "Initial release"  2023-09-06 RCSB 
X4U "Modify name"      2023-11-01 RCSB 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      X4U 
_pdbx_chem_comp_synonyms.name         "2-[(2-chlorophenyl)(phenyl)amino]-N-[7-(hydroxyamino)-7-oxoheptyl]pyrimidine-5-carboxamide" 
_pdbx_chem_comp_synonyms.provenance   PDB 
_pdbx_chem_comp_synonyms.type         ? 
# 
