data_X2U
# 
_chem_comp.id                                    X2U 
_chem_comp.name                                  "N-(3-{4-[3-({2-[(3R)-2,6-dioxopiperidin-3-yl]-1,3-dioxo-2,3-dihydro-1H-isoindol-4-yl}amino)propoxy]butoxy}propyl)-4-sulfamoylbenzamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C30 H37 N5 O9 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-10-26 
_chem_comp.pdbx_modified_date                    2023-02-17 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        643.708 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     X2U 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8EXC 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
X2U C02  C1  C 0 1 N N N 33.469 15.781 12.656 -9.296  -0.109 -0.116 C02  X2U 1  
X2U C04  C2  C 0 1 N N R 35.964 16.343 11.720 -11.462 -1.332 -0.139 C04  X2U 2  
X2U C05  C3  C 0 1 N N N 35.362 17.590 11.210 -12.344 -1.336 -1.392 C05  X2U 3  
X2U C06  C4  C 0 1 N N N 35.568 17.974 9.826  -13.271 -2.555 -1.332 C06  X2U 4  
X2U C07  C5  C 0 1 N N N 36.081 17.044 8.756  -14.052 -2.519 -0.044 C07  X2U 5  
X2U C09  C6  C 0 1 N N N 36.481 15.311 10.685 -12.339 -1.363 1.085  C09  X2U 6  
X2U C12  C7  C 0 1 N N N 35.230 15.934 14.178 -11.134 1.134  -0.110 C12  X2U 7  
X2U C13  C8  C 0 1 Y N N 33.931 15.607 14.969 -10.002 2.083  -0.094 C13  X2U 8  
X2U C14  C9  C 0 1 Y N N 33.707 15.404 16.350 -9.897  3.462  -0.077 C14  X2U 9  
X2U C15  C10 C 0 1 Y N N 32.429 15.117 16.821 -8.644  4.062  -0.065 C15  X2U 10 
X2U C16  C11 C 0 1 Y N N 31.358 15.028 15.924 -7.499  3.296  -0.069 C16  X2U 11 
X2U C17  C12 C 0 1 Y N N 31.554 15.219 14.552 -7.583  1.901  -0.084 C17  X2U 12 
X2U C19  C13 C 0 1 N N N 29.384 14.055 13.828 -5.115  1.781  -0.075 C19  X2U 13 
X2U C20  C14 C 0 1 N N N 27.978 14.534 14.249 -4.019  0.714  -0.082 C20  X2U 14 
X2U C21  C15 C 0 1 N N N 26.974 13.383 14.488 -2.647  1.393  -0.069 C21  X2U 15 
X2U C23  C16 C 0 1 N N N 24.748 13.044 15.466 -0.296  0.927  -0.063 C23  X2U 16 
X2U C24  C17 C 0 1 N N N 24.100 11.979 14.561 0.713   -0.224 -0.072 C24  X2U 17 
X2U C25  C18 C 0 1 N N N 22.771 11.359 15.079 2.134   0.344  -0.059 C25  X2U 18 
X2U C26  C19 C 0 1 N N N 22.113 10.395 14.062 3.143   -0.806 -0.068 C26  X2U 19 
X2U C28  C20 C 0 1 N N N 20.132 9.119  13.578 5.494   -1.272 -0.062 C28  X2U 20 
X2U C29  C21 C 0 1 N N N 20.320 7.585  13.386 6.865   -0.594 -0.049 C29  X2U 21 
X2U C30  C22 C 0 1 N N N 19.405 6.821  12.380 7.962   -1.661 -0.056 C30  X2U 22 
X2U C32  C23 C 0 1 N N N 17.530 5.635  13.674 10.396  -1.759 -0.046 C32  X2U 23 
X2U C33  C24 C 0 1 Y N N 16.931 4.425  14.428 11.722  -1.103 -0.033 C33  X2U 24 
X2U C34  C25 C 0 1 Y N N 17.776 3.430  14.913 11.815  0.289  -0.012 C34  X2U 25 
X2U C35  C26 C 0 1 Y N N 17.277 2.352  15.610 13.054  0.895  0.000  C35  X2U 26 
X2U C36  C27 C 0 1 Y N N 15.913 2.260  15.849 14.204  0.124  -0.009 C36  X2U 27 
X2U C41  C28 C 0 1 Y N N 15.066 3.263  15.405 14.118  -1.257 -0.030 C41  X2U 28 
X2U C42  C29 C 0 1 Y N N 15.570 4.342  14.706 12.885  -1.874 -0.037 C42  X2U 29 
X2U C44  C30 C 0 1 Y N N 32.869 15.518 14.070 -8.834  1.289  -0.098 C44  X2U 30 
X2U N03  N1  N 0 1 N N N 34.928 16.014 12.760 -10.642 -0.118 -0.122 N03  X2U 31 
X2U N08  N2  N 0 1 N N N 36.582 15.735 9.248  -13.549 -1.944 1.059  N08  X2U 32 
X2U N18  N3  N 0 1 N N N 30.384 15.116 13.666 -6.428  1.132  -0.088 N18  X2U 33 
X2U N31  N4  N 0 1 N N N 18.856 5.615  13.044 9.275   -1.011 -0.043 N31  X2U 34 
X2U N38  N5  N 0 1 N N N 15.880 -0.626 16.084 16.219  1.099  1.592  N38  X2U 35 
X2U O01  O1  O 0 1 N N N 32.833 15.795 11.641 -8.581  -1.092 -0.128 O01  X2U 36 
X2U O10  O2  O 0 1 N N N 36.752 14.211 11.017 -11.946 -0.853 2.112  O10  X2U 37 
X2U O11  O3  O 0 1 N N N 36.102 17.390 7.615  -15.156 -3.018 -0.004 O11  X2U 38 
X2U O22  O4  O 0 1 N N N 25.676 13.879 14.779 -1.623  0.396  -0.075 O22  X2U 39 
X2U O27  O5  O 0 1 N N N 21.005 9.661  14.574 4.470   -0.275 -0.056 O27  X2U 40 
X2U O39  O6  O 0 1 N N N 13.829 0.836  16.729 16.698  -0.029 -0.551 O39  X2U 41 
X2U O40  O7  O 0 1 N N N 15.734 0.937  18.147 15.590  2.211  -0.520 O40  X2U 42 
X2U O43  O8  O 0 1 N N N 16.871 6.616  13.619 10.318  -2.972 -0.060 O43  X2U 43 
X2U O45  O9  O 0 1 N N N 36.315 16.077 14.648 -12.311 1.433  -0.111 O45  X2U 44 
X2U S37  S1  S 0 1 N N N 15.274 0.801  16.757 15.783  0.905  0.006  S37  X2U 45 
X2U H041 H1  H 0 0 N N N 36.857 16.652 12.284 -10.815 -2.209 -0.146 H041 X2U 46 
X2U H052 H2  H 0 0 N N N 35.753 18.410 11.830 -12.940 -0.424 -1.424 H052 X2U 47 
X2U H051 H3  H 0 0 N N N 34.276 17.504 11.359 -11.716 -1.394 -2.281 H051 X2U 48 
X2U H062 H4  H 0 0 N N N 36.276 18.815 9.853  -13.960 -2.530 -2.176 H062 X2U 49 
X2U H061 H5  H 0 0 N N N 34.591 18.329 9.467  -12.677 -3.467 -1.374 H061 X2U 50 
X2U H141 H6  H 0 0 N N N 34.532 15.472 17.043 -10.788 4.072  -0.075 H141 X2U 51 
X2U H151 H7  H 0 0 N N N 32.264 14.963 17.877 -8.566  5.139  -0.053 H151 X2U 52 
X2U H161 H8  H 0 0 N N N 30.368 14.809 16.296 -6.531  3.775  -0.059 H161 X2U 53 
X2U H192 H9  H 0 0 N N N 29.290 13.527 12.868 -5.021  2.393  0.822  H192 X2U 54 
X2U H191 H10 H 0 0 N N N 29.750 13.357 14.596 -5.014  2.413  -0.958 H191 X2U 55 
X2U H201 H11 H 0 0 N N N 28.072 15.111 15.181 -4.120  0.083  0.801  H201 X2U 56 
X2U H202 H12 H 0 0 N N N 27.580 15.182 13.455 -4.113  0.103  -0.979 H202 X2U 57 
X2U H212 H13 H 0 0 N N N 26.924 12.758 13.584 -2.546  2.024  -0.951 H212 X2U 58 
X2U H211 H14 H 0 0 N N N 27.323 12.774 15.335 -2.553  2.004  0.829  H211 X2U 59 
X2U H232 H15 H 0 0 N N N 23.952 13.677 15.885 -0.153  1.529  0.834  H232 X2U 60 
X2U H231 H16 H 0 0 N N N 25.277 12.532 16.283 -0.146  1.548  -0.946 H231 X2U 61 
X2U H241 H17 H 0 0 N N N 24.825 11.161 14.432 0.562   -0.845 0.811  H241 X2U 62 
X2U H242 H18 H 0 0 N N N 23.896 12.445 13.586 0.570   -0.826 -0.969 H242 X2U 63 
X2U H252 H19 H 0 0 N N N 22.065 12.175 15.295 2.284   0.966  -0.942 H252 X2U 64 
X2U H251 H20 H 0 0 N N N 22.982 10.802 16.004 2.276   0.946  0.838  H251 X2U 65 
X2U H262 H21 H 0 0 N N N 22.876 9.676  13.727 2.992   -1.428 0.815  H262 X2U 66 
X2U H261 H22 H 0 0 N N N 21.765 10.987 13.203 3.000   -1.408 -0.965 H261 X2U 67 
X2U H282 H23 H 0 0 N N N 20.335 9.621  12.621 5.400   -1.884 -0.960 H282 X2U 68 
X2U H281 H24 H 0 0 N N N 19.092 9.311  13.879 5.392   -1.903 0.820  H281 X2U 69 
X2U H292 H25 H 0 0 N N N 20.173 7.118  14.371 6.967   0.038  -0.932 H292 X2U 70 
X2U H291 H26 H 0 0 N N N 21.358 7.428  13.058 6.959   0.018  0.848  H291 X2U 71 
X2U H301 H27 H 0 0 N N N 19.994 6.521  11.501 7.860   -2.292 0.827  H301 X2U 72 
X2U H302 H28 H 0 0 N N N 18.579 7.475  12.063 7.868   -2.272 -0.953 H302 X2U 73 
X2U H341 H29 H 0 0 N N N 18.839 3.505  14.740 10.918  0.891  -0.005 H341 X2U 74 
X2U H351 H30 H 0 0 N N N 17.944 1.582  15.969 13.128  1.972  0.016  H351 X2U 75 
X2U H411 H31 H 0 0 N N N 14.007 3.200  15.607 15.019  -1.852 -0.038 H411 X2U 76 
X2U H421 H32 H 0 0 N N N 14.905 5.125  14.374 12.820  -2.952 -0.049 H421 X2U 77 
X2U H081 H33 H 0 0 N N N 37.005 15.109 8.593  -14.080 -1.949 1.870  H081 X2U 78 
X2U H181 H34 H 0 0 N N N 30.742 15.025 12.737 -6.491  0.164  -0.099 H181 X2U 79 
X2U H311 H35 H 0 0 N N N 19.397 4.774  13.063 9.337   -0.043 -0.032 H311 X2U 80 
X2U H1   H36 H 0 1 N N N 15.523 -1.411 16.590 17.157  1.090  1.841  H1   X2U 81 
X2U H381 H37 H 0 0 N N N 15.597 -0.689 15.127 15.538  1.221  2.271  H381 X2U 82 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
X2U O11 C07  DOUB N N 1  
X2U C07 N08  SING N N 2  
X2U C07 C06  SING N N 3  
X2U N08 C09  SING N N 4  
X2U C06 C05  SING N N 5  
X2U C09 O10  DOUB N N 6  
X2U C09 C04  SING N N 7  
X2U C05 C04  SING N N 8  
X2U O01 C02  DOUB N N 9  
X2U C04 N03  SING N N 10 
X2U C30 N31  SING N N 11 
X2U C30 C29  SING N N 12 
X2U C02 N03  SING N N 13 
X2U C02 C44  SING N N 14 
X2U N03 C12  SING N N 15 
X2U N31 C32  SING N N 16 
X2U C29 C28  SING N N 17 
X2U C28 O27  SING N N 18 
X2U O43 C32  DOUB N N 19 
X2U N18 C19  SING N N 20 
X2U N18 C17  SING N N 21 
X2U C32 C33  SING N N 22 
X2U C19 C20  SING N N 23 
X2U C26 O27  SING N N 24 
X2U C26 C25  SING N N 25 
X2U C44 C17  DOUB Y N 26 
X2U C44 C13  SING Y N 27 
X2U C12 O45  DOUB N N 28 
X2U C12 C13  SING N N 29 
X2U C20 C21  SING N N 30 
X2U C33 C42  DOUB Y N 31 
X2U C33 C34  SING Y N 32 
X2U C21 O22  SING N N 33 
X2U C17 C16  SING Y N 34 
X2U C24 C25  SING N N 35 
X2U C24 C23  SING N N 36 
X2U C42 C41  SING Y N 37 
X2U O22 C23  SING N N 38 
X2U C34 C35  DOUB Y N 39 
X2U C13 C14  DOUB Y N 40 
X2U C41 C36  DOUB Y N 41 
X2U C35 C36  SING Y N 42 
X2U C36 S37  SING N N 43 
X2U C16 C15  DOUB Y N 44 
X2U N38 S37  SING N N 45 
X2U C14 C15  SING Y N 46 
X2U O39 S37  DOUB N N 47 
X2U S37 O40  DOUB N N 48 
X2U C04 H041 SING N N 49 
X2U C05 H052 SING N N 50 
X2U C05 H051 SING N N 51 
X2U C06 H062 SING N N 52 
X2U C06 H061 SING N N 53 
X2U C14 H141 SING N N 54 
X2U C15 H151 SING N N 55 
X2U C16 H161 SING N N 56 
X2U C19 H192 SING N N 57 
X2U C19 H191 SING N N 58 
X2U C20 H201 SING N N 59 
X2U C20 H202 SING N N 60 
X2U C21 H212 SING N N 61 
X2U C21 H211 SING N N 62 
X2U C23 H232 SING N N 63 
X2U C23 H231 SING N N 64 
X2U C24 H241 SING N N 65 
X2U C24 H242 SING N N 66 
X2U C25 H252 SING N N 67 
X2U C25 H251 SING N N 68 
X2U C26 H262 SING N N 69 
X2U C26 H261 SING N N 70 
X2U C28 H282 SING N N 71 
X2U C28 H281 SING N N 72 
X2U C29 H292 SING N N 73 
X2U C29 H291 SING N N 74 
X2U C30 H301 SING N N 75 
X2U C30 H302 SING N N 76 
X2U C34 H341 SING N N 77 
X2U C35 H351 SING N N 78 
X2U C41 H411 SING N N 79 
X2U C42 H421 SING N N 80 
X2U N08 H081 SING N N 81 
X2U N18 H181 SING N N 82 
X2U N31 H311 SING N N 83 
X2U N38 H1   SING N N 84 
X2U N38 H381 SING N N 85 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
X2U SMILES           ACDLabs              12.01 "NS(=O)(=O)c1ccc(cc1)C(=O)NCCCOCCCCOCCCNc1cccc2C(=O)N(C(=O)c21)C1CCC(=O)NC1=O"                                                                                                                                                                 
X2U InChI            InChI                1.06  "InChI=1S/C30H37N5O9S/c31-45(41,42)21-10-8-20(9-11-21)27(37)33-15-5-19-44-17-2-1-16-43-18-4-14-32-23-7-3-6-22-26(23)30(40)35(29(22)39)24-12-13-25(36)34-28(24)38/h3,6-11,24,32H,1-2,4-5,12-19H2,(H,33,37)(H2,31,41,42)(H,34,36,38)/t24-/m1/s1" 
X2U InChIKey         InChI                1.06  RBECNOZCCFLMDH-XMMPIXPASA-N                                                                                                                                                                                                                    
X2U SMILES_CANONICAL CACTVS               3.385 "N[S](=O)(=O)c1ccc(cc1)C(=O)NCCCOCCCCOCCCNc2cccc3C(=O)N([C@@H]4CCC(=O)NC4=O)C(=O)c23"                                                                                                                                                          
X2U SMILES           CACTVS               3.385 "N[S](=O)(=O)c1ccc(cc1)C(=O)NCCCOCCCCOCCCNc2cccc3C(=O)N([CH]4CCC(=O)NC4=O)C(=O)c23"                                                                                                                                                            
X2U SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc2c(c(c1)NCCCOCCCCOCCCNC(=O)c3ccc(cc3)S(=O)(=O)N)C(=O)N(C2=O)[C@@H]4CCC(=O)NC4=O"                                                                                                                                                          
X2U SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc2c(c(c1)NCCCOCCCCOCCCNC(=O)c3ccc(cc3)S(=O)(=O)N)C(=O)N(C2=O)C4CCC(=O)NC4=O"                                                                                                                                                               
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
X2U "SYSTEMATIC NAME" ACDLabs              12.01 "N-(3-{4-[3-({2-[(3R)-2,6-dioxopiperidin-3-yl]-1,3-dioxo-2,3-dihydro-1H-isoindol-4-yl}amino)propoxy]butoxy}propyl)-4-sulfamoylbenzamide"                  
X2U "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[3-[4-[3-[[2-[(3~{R})-2,6-bis(oxidanylidene)piperidin-3-yl]-1,3-bis(oxidanylidene)isoindol-4-yl]amino]propoxy]butoxy]propyl]-4-sulfamoyl-benzamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
X2U "Create component" 2022-10-26 RCSB 
X2U "Initial release"  2023-02-22 RCSB 
# 
