data_W0U
# 
_chem_comp.id                                    W0U 
_chem_comp.name                                  "[(2~{S},4~{S},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-oxolan-2-yl]methoxy-~{N}-[(2~{S},3~{S})-2-azanyl-3-oxidanyl-butanoyl]phosphonamidic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C14 H22 N7 O7 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-04-24 
_chem_comp.pdbx_modified_date                    2023-07-07 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        431.341 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     W0U 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8OU8 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
W0U N1  N1  N 0 1 N N N 11.799 35.984 17.348 3.860  -0.217 -0.301 N1  W0U 1  
W0U N3  N2  N 0 1 Y N N 18.348 37.754 15.540 -3.303 1.884  -0.437 N3  W0U 2  
W0U C4  C1  C 0 1 N N N 11.772 34.699 16.918 3.363  0.909  0.248  C4  W0U 3  
W0U C5  C2  C 0 1 N N N 14.167 36.504 19.018 1.238  -2.351 -0.529 C5  W0U 4  
W0U C6  C3  C 0 1 N N S 15.452 36.808 19.670 -0.205 -2.541 -0.056 C6  W0U 5  
W0U C7  C4  C 0 1 N N R 17.674 36.999 19.051 -2.223 -1.483 0.219  C7  W0U 6  
W0U C8  C5  C 0 1 N N S 17.293 38.267 19.831 -2.437 -2.382 -1.018 C8  W0U 7  
W0U C10 C6  C 0 1 Y N N 17.551 37.531 16.566 -2.395 0.951  -0.421 C10 W0U 8  
W0U C13 C7  C 0 1 Y N N 20.910 37.847 15.506 -5.761 1.905  0.227  C13 W0U 9  
W0U C1  C8  C 0 1 N N N 11.492 33.970 19.712 5.184  4.101  -0.829 C1  W0U 10 
W0U C2  C9  C 0 1 N N S 10.368 33.517 18.810 4.976  2.754  -0.133 C2  W0U 11 
W0U C3  C10 C 0 1 N N S 10.532 33.893 17.320 3.569  2.236  -0.437 C3  W0U 12 
W0U P1  P1  P 0 1 N N N 12.919 37.175 16.860 3.630  -1.661 0.442  P1  W0U 13 
W0U O1  O1  O 0 1 N N N 13.179 37.146 15.358 4.263  -2.733 -0.359 O1  W0U 14 
W0U O2  O2  O 0 1 N N N 14.275 36.786 17.608 2.052  -1.951 0.575  O2  W0U 15 
W0U O3  O3  O 0 1 N N N 16.507 36.199 18.900 -0.797 -1.267 0.277  O3  W0U 16 
W0U C9  C11 C 0 1 N N N 15.790 38.284 19.688 -1.078 -3.095 -1.204 C9  W0U 17 
W0U O4  O4  O 0 1 N N N 17.817 39.450 19.266 -2.750 -1.590 -2.165 O4  W0U 18 
W0U N2  N3  N 0 1 Y N N 18.232 37.279 17.736 -2.928 -0.210 0.052  N2  W0U 19 
W0U C11 C12 C 0 1 Y N N 19.573 37.389 17.428 -4.247 0.032  0.344  C11 W0U 20 
W0U C12 C13 C 0 1 Y N N 19.633 37.693 16.075 -4.473 1.382  0.024  C12 W0U 21 
W0U N4  N4  N 0 1 N N N 21.136 38.050 14.207 -6.043 3.227  -0.070 N4  W0U 22 
W0U N5  N5  N 0 1 Y N N 21.970 37.723 16.338 -6.702 1.101  0.711  N5  W0U 23 
W0U C14 C14 C 0 1 Y N N 21.761 37.401 17.619 -6.442 -0.162 0.997  C14 W0U 24 
W0U N6  N6  N 0 1 Y N N 20.615 37.223 18.260 -5.251 -0.695 0.823  N6  W0U 25 
W0U O5  O5  O 0 1 N N N 12.592 38.476 17.567 4.295  -1.623 1.908  O5  W0U 26 
W0U O6  O6  O 0 1 N N N 12.622 34.187 16.191 2.750  0.855  1.293  O6  W0U 27 
W0U N7  N7  N 0 1 N N N 10.457 32.665 16.476 2.575  3.200  0.054  N7  W0U 28 
W0U O7  O7  O 0 1 N N N 10.090 32.104 18.837 5.942  1.816  -0.610 O7  W0U 29 
W0U H1  H1  H 0 1 N N N 11.101 36.258 18.010 4.350  -0.174 -1.137 H1  W0U 30 
W0U H2  H2  H 0 1 N N N 13.374 37.126 19.458 1.614  -3.290 -0.935 H2  W0U 31 
W0U H3  H3  H 0 1 N N N 13.922 35.441 19.163 1.269  -1.582 -1.301 H3  W0U 32 
W0U H4  H4  H 0 1 N N N 15.453 36.419 20.699 -0.237 -3.212 0.803  H4  W0U 33 
W0U H5  H5  H 0 1 N N N 18.419 36.449 19.644 -2.567 -1.991 1.121  H5  W0U 34 
W0U H6  H6  H 0 1 N N N 17.576 38.158 20.888 -3.227 -3.110 -0.831 H6  W0U 35 
W0U H7  H7  H 0 1 N N N 16.473 37.545 16.496 -1.370 1.079  -0.737 H7  W0U 36 
W0U H8  H8  H 0 1 N N N 11.283 33.656 20.745 5.068  3.976  -1.905 H8  W0U 37 
W0U H9  H9  H 0 1 N N N 12.437 33.518 19.376 4.447  4.816  -0.464 H9  W0U 38 
W0U H10 H10 H 0 1 N N N 11.575 35.066 19.672 6.187  4.470  -0.612 H10 W0U 39 
W0U H11 H11 H 0 1 N N N 9.462  34.035 19.157 5.092  2.879  0.944  H11 W0U 40 
W0U H12 H12 H 0 1 N N N 9.661  34.513 17.061 3.452  2.110  -1.514 H12 W0U 41 
W0U H13 H13 H 0 1 N N N 15.484 38.774 18.752 -0.643 -2.842 -2.171 H13 W0U 42 
W0U H14 H14 H 0 1 N N N 15.314 38.791 20.540 -1.196 -4.174 -1.107 H14 W0U 43 
W0U H15 H15 H 0 1 N N N 17.549 40.197 19.789 -2.894 -2.104 -2.971 H15 W0U 44 
W0U H16 H16 H 0 1 N N N 22.122 38.081 14.040 -5.348 3.804  -0.423 H16 W0U 45 
W0U H17 H17 H 0 1 N N N 20.732 37.304 13.678 -6.937 3.576  0.075  H17 W0U 46 
W0U H18 H18 H 0 1 N N N 22.652 37.267 18.215 -7.236 -0.781 1.388  H18 W0U 47 
W0U H19 H19 H 0 1 N N N 12.586 39.187 16.937 3.928  -0.942 2.488  H19 W0U 48 
W0U H20 H20 H 0 1 N N N 9.650  32.133 16.732 2.662  3.333  1.050  H20 W0U 49 
W0U H21 H21 H 0 1 N N N 10.392 32.926 15.513 2.650  4.078  -0.437 H21 W0U 50 
W0U H23 H23 H 0 1 N N N 9.980  31.820 19.737 6.859  2.081  -0.451 H23 W0U 51 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
W0U N4  C13 SING N N 1  
W0U O1  P1  DOUB N N 2  
W0U C13 C12 DOUB Y N 3  
W0U C13 N5  SING Y N 4  
W0U N3  C12 SING Y N 5  
W0U N3  C10 DOUB Y N 6  
W0U C12 C11 SING Y N 7  
W0U O6  C4  DOUB N N 8  
W0U N5  C14 DOUB Y N 9  
W0U N7  C3  SING N N 10 
W0U C10 N2  SING Y N 11 
W0U P1  N1  SING N N 12 
W0U P1  O5  SING N N 13 
W0U P1  O2  SING N N 14 
W0U C4  C3  SING N N 15 
W0U C4  N1  SING N N 16 
W0U C3  C2  SING N N 17 
W0U C11 N2  SING Y N 18 
W0U C11 N6  DOUB Y N 19 
W0U O2  C5  SING N N 20 
W0U C14 N6  SING Y N 21 
W0U N2  C7  SING N N 22 
W0U C2  O7  SING N N 23 
W0U C2  C1  SING N N 24 
W0U O3  C7  SING N N 25 
W0U O3  C6  SING N N 26 
W0U C5  C6  SING N N 27 
W0U C7  C8  SING N N 28 
W0U O4  C8  SING N N 29 
W0U C6  C9  SING N N 30 
W0U C9  C8  SING N N 31 
W0U N1  H1  SING N N 32 
W0U C5  H2  SING N N 33 
W0U C5  H3  SING N N 34 
W0U C6  H4  SING N N 35 
W0U C7  H5  SING N N 36 
W0U C8  H6  SING N N 37 
W0U C10 H7  SING N N 38 
W0U C1  H8  SING N N 39 
W0U C1  H9  SING N N 40 
W0U C1  H10 SING N N 41 
W0U C2  H11 SING N N 42 
W0U C3  H12 SING N N 43 
W0U C9  H13 SING N N 44 
W0U C9  H14 SING N N 45 
W0U O4  H15 SING N N 46 
W0U N4  H16 SING N N 47 
W0U N4  H17 SING N N 48 
W0U C14 H18 SING N N 49 
W0U O5  H19 SING N N 50 
W0U N7  H20 SING N N 51 
W0U N7  H21 SING N N 52 
W0U O7  H23 SING N N 53 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
W0U InChI            InChI                1.06  "InChI=1S/C14H22N7O7P/c1-6(22)9(15)13(24)20-29(25,26)27-3-7-2-8(23)14(28-7)21-5-19-10-11(16)17-4-18-12(10)21/h4-9,14,22-23H,2-3,15H2,1H3,(H2,16,17,18)(H2,20,24,25,26)/t6-,7-,8-,9-,14+/m0/s1" 
W0U InChIKey         InChI                1.06  ATWLNPAQYPTPKC-UDFANUMJSA-N                                                                                                                                                                    
W0U SMILES_CANONICAL CACTVS               3.385 "C[C@H](O)[C@H](N)C(=O)N[P](O)(=O)OC[C@@H]1C[C@H](O)[C@@H](O1)n2cnc3c(N)ncnc23"                                                                                                                
W0U SMILES           CACTVS               3.385 "C[CH](O)[CH](N)C(=O)N[P](O)(=O)OC[CH]1C[CH](O)[CH](O1)n2cnc3c(N)ncnc23"                                                                                                                       
W0U SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H]([C@@H](C(=O)NP(=O)(O)OC[C@@H]1C[C@@H]([C@@H](O1)n2cnc3c2ncnc3N)O)N)O"                                                                                                                 
W0U SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C(C(=O)NP(=O)(O)OCC1CC(C(O1)n2cnc3c2ncnc3N)O)N)O"                                                                                                                                          
# 
_pdbx_chem_comp_identifier.comp_id           W0U 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "[(2~{S},4~{S},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-oxolan-2-yl]methoxy-~{N}-[(2~{S},3~{S})-2-azanyl-3-oxidanyl-butanoyl]phosphonamidic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
W0U "Create component" 2023-04-24 PDBE 
W0U "Initial release"  2023-07-12 RCSB 
# 
