data_VPU
#

_chem_comp.id                                   VPU
_chem_comp.name                                 "[[(3R,4R,5S,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-(pentanoylamino)oxan-2-ylidene]amino] N-phenylcarbamate"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C18 H25 N3 O7"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        N-Valeryl-PUGNAc
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2009-04-15
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       395.407
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    VPU
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3GSM
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
VPU  C3    C3    C  0  1  N  N  N  -8.481  18.949  12.692   1.735   6.659  -0.792  C3    VPU   1  
VPU  C2    C2    C  0  1  N  N  N  -7.516  18.736  13.874   1.005   5.792   0.235  C2    VPU   2  
VPU  C1    C1    C  0  1  N  N  N  -7.561  17.301  14.436   0.304   4.635  -0.480  C1    VPU   3  
VPU  CAH   CAH   C  0  1  N  N  N  -6.140  16.821  14.757  -0.427   3.768   0.547  CAH   VPU   4  
VPU  CAG   CAG   C  0  1  N  N  N  -5.536  16.183  13.501  -1.118   2.629  -0.157  CAG   VPU   5  
VPU  OAN   OAN   O  0  1  N  N  N  -6.180  15.355  12.855  -1.034   2.521  -1.362  OAN   VPU   6  
VPU  NAI   NAI   N  0  1  N  N  N  -4.312  16.590  13.162  -1.828   1.730   0.552  NAI   VPU   7  
VPU  CAB   CAB   C  0  1  N  N  R  -3.655  16.032  11.965  -2.500   0.623  -0.133  CAB   VPU   8  
VPU  CAC   CAC   C  0  1  N  N  R  -2.533  15.022  12.298  -3.688   0.139   0.709  CAC   VPU   9  
VPU  OAJ   OAJ   O  0  1  N  N  N  -3.050  13.811  12.885  -4.702   1.145   0.729  OAJ   VPU  10  
VPU  CAD   CAD   C  0  1  N  N  S  -1.877  14.702  10.966  -4.249  -1.142   0.084  CAD   VPU  11  
VPU  OAK   OAK   O  0  1  N  N  N  -1.040  13.539  11.058  -5.354  -1.608   0.862  OAK   VPU  12  
VPU  CAE   CAE   C  0  1  N  N  R  -1.104  15.936  10.498  -3.157  -2.215   0.054  CAE   VPU  13  
VPU  CAF   CAF   C  0  1  N  N  N  -0.354  15.506   9.231  -3.704  -3.483  -0.603  CAF   VPU  14  
VPU  OAM   OAM   O  0  1  N  N  N  -1.266  15.431   8.132  -2.725  -4.520  -0.526  OAM   VPU  15  
VPU  OAL   OAL   O  0  1  N  N  N  -2.010  17.081  10.260  -2.039  -1.730  -0.698  OAL   VPU  16  
VPU  CAA   CAA   C  0  1  N  N  N  -3.204  17.134  10.966  -1.537  -0.532  -0.302  CAA   VPU  17  
VPU  NAY   NAY   N  0  1  N  N  N  -4.117  18.124  10.799  -0.275  -0.382  -0.076  NAY   VPU  18  
VPU  OAQ   OAQ   O  0  1  N  N  N  -4.129  19.235   9.969   0.484  -1.324  -0.219  OAQ   VPU  19  
VPU  CAP   CAP   C  0  1  N  N  N  -5.467  19.538   9.683   1.788  -1.101   0.033  CAP   VPU  20  
VPU  OAR   OAR   O  0  1  N  N  N  -6.372  18.747   9.965   2.158   0.002   0.385  OAR   VPU  21  
VPU  NAO   NAO   N  0  1  N  N  N  -5.819  20.689   9.092   2.681  -2.100  -0.105  NAO   VPU  22  
VPU  CAS   CAS   C  0  1  Y  N  N  -5.037  21.696   8.690   4.047  -1.846   0.062  CAS   VPU  23  
VPU  CAT   CAT   C  0  1  Y  N  N  -4.396  22.521   9.620   4.472  -0.917   1.003  CAT   VPU  24  
VPU  CAU   CAU   C  0  1  Y  N  N  -3.601  23.581   9.181   5.820  -0.668   1.166  CAU   VPU  25  
VPU  CAV   CAV   C  0  1  Y  N  N  -3.459  23.826   7.817   6.748  -1.343   0.394  CAV   VPU  26  
VPU  CAW   CAW   C  0  1  Y  N  N  -4.110  23.011   6.892   6.328  -2.269  -0.544  CAW   VPU  27  
VPU  CAX   CAX   C  0  1  Y  N  N  -4.905  21.953   7.324   4.981  -2.526  -0.708  CAX   VPU  28  
VPU  H3    H3    H  0  1  N  N  N  -9.514  19.000  13.066   2.475   6.055  -1.318  H3    VPU  29  
VPU  H3A   H3A   H  0  1  N  N  N  -8.230  19.889  12.179   1.017   7.057  -1.508  H3A   VPU  30  
VPU  H3B   H3B   H  0  1  N  N  N  -8.387  18.110  11.987   2.235   7.483  -0.283  H3B   VPU  31  
VPU  H2    H2    H  0  1  N  N  N  -6.493  18.939  13.526   1.724   5.394   0.951  H2    VPU  32  
VPU  H2A   H2A   H  0  1  N  N  N  -7.824  19.418  14.680   0.266   6.396   0.761  H2A   VPU  33  
VPU  H1    H1    H  0  1  N  N  N  -8.166  17.289  15.355  -0.415   5.034  -1.196  H1    VPU  34  
VPU  H1A   H1A   H  0  1  N  N  N  -8.009  16.632  13.686   1.043   4.031  -1.005  H1A   VPU  35  
VPU  HAH   HAH   H  0  1  N  N  N  -5.523  17.676  15.071   0.292   3.370   1.263  HAH   VPU  36  
VPU  HAHA  HAHA  H  0  0  N  N  N  -6.171  16.082  15.572  -1.166   4.373   1.073  HAHA  VPU  37  
VPU  HNAI  HNAI  H  0  0  N  N  N  -3.840  17.273  13.719  -1.895   1.816   1.516  HNAI  VPU  38  
VPU  HAB   HAB   H  0  1  N  N  N  -4.427  15.445  11.445  -2.852   0.955  -1.109  HAB   VPU  39  
VPU  HAC   HAC   H  0  1  N  N  N  -1.834  15.448  13.032  -3.355  -0.065   1.727  HAC   VPU  40  
VPU  HOAJ  HOAJ  H  0  0  N  N  N  -3.164  13.154  12.208  -5.484   0.906   1.245  HOAJ  VPU  41  
VPU  HAD   HAD   H  0  1  N  N  N  -2.648  14.458  10.220  -4.583  -0.934  -0.933  HAD   VPU  42  
VPU  HOAK  HOAK  H  0  0  N  N  N  -0.855  13.212  10.186  -5.760  -2.418   0.523  HOAK  VPU  43  
VPU  HAE   HAE   H  0  1  N  N  N  -0.397  16.288  11.264  -2.841  -2.440   1.073  HAE   VPU  44  
VPU  HAF   HAF   H  0  1  N  N  N   0.431  16.242   9.004  -4.610  -3.799  -0.085  HAF   VPU  45  
VPU  HAFA  HAFA  H  0  0  N  N  N   0.101  14.518   9.395  -3.937  -3.279  -1.649  HAFA  VPU  46  
VPU  HOAM  HOAM  H  0  0  N  N  N  -2.157  15.414   8.460  -3.004  -5.356  -0.924  HOAM  VPU  47  
VPU  HNAO  HNAO  H  0  0  N  N  N  -6.798  20.810   8.930   2.378  -2.996  -0.320  HNAO  VPU  48  
VPU  HAT   HAT   H  0  1  N  N  N  -4.516  22.338  10.678   3.748  -0.389   1.607  HAT   VPU  49  
VPU  HAU   HAU   H  0  1  N  N  N  -3.096  24.211   9.898   6.151   0.054   1.898  HAU   VPU  50  
VPU  HAV   HAV   H  0  1  N  N  N  -2.845  24.647   7.476   7.802  -1.146   0.522  HAV   VPU  51  
VPU  HAW   HAW   H  0  1  N  N  N  -3.997  23.201   5.835   7.055  -2.793  -1.146  HAW   VPU  52  
VPU  HAX   HAX   H  0  1  N  N  N  -5.418  21.333   6.604   4.654  -3.252  -1.438  HAX   VPU  53  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
VPU  C3   C2    SING  N  N   1  
VPU  C2   C1    SING  N  N   2  
VPU  C1   CAH   SING  N  N   3  
VPU  CAH  CAG   SING  N  N   4  
VPU  CAG  OAN   DOUB  N  N   5  
VPU  CAG  NAI   SING  N  N   6  
VPU  NAI  CAB   SING  N  N   7  
VPU  CAB  CAC   SING  N  N   8  
VPU  CAB  CAA   SING  N  N   9  
VPU  CAC  OAJ   SING  N  N  10  
VPU  CAC  CAD   SING  N  N  11  
VPU  CAD  OAK   SING  N  N  12  
VPU  CAD  CAE   SING  N  N  13  
VPU  CAE  CAF   SING  N  N  14  
VPU  CAE  OAL   SING  N  N  15  
VPU  CAF  OAM   SING  N  N  16  
VPU  OAL  CAA   SING  N  N  17  
VPU  CAA  NAY   DOUB  N  N  18  
VPU  NAY  OAQ   SING  N  N  19  
VPU  OAQ  CAP   SING  N  N  20  
VPU  CAP  OAR   DOUB  N  N  21  
VPU  CAP  NAO   SING  N  N  22  
VPU  NAO  CAS   SING  N  N  23  
VPU  CAS  CAT   DOUB  Y  N  24  
VPU  CAS  CAX   SING  Y  N  25  
VPU  CAT  CAU   SING  Y  N  26  
VPU  CAU  CAV   DOUB  Y  N  27  
VPU  CAV  CAW   SING  Y  N  28  
VPU  CAW  CAX   DOUB  Y  N  29  
VPU  C3   H3    SING  N  N  30  
VPU  C3   H3A   SING  N  N  31  
VPU  C3   H3B   SING  N  N  32  
VPU  C2   H2    SING  N  N  33  
VPU  C2   H2A   SING  N  N  34  
VPU  C1   H1    SING  N  N  35  
VPU  C1   H1A   SING  N  N  36  
VPU  CAH  HAH   SING  N  Z  37  
VPU  CAH  HAHA  SING  N  N  38  
VPU  NAI  HNAI  SING  N  N  39  
VPU  CAB  HAB   SING  N  N  40  
VPU  CAC  HAC   SING  N  N  41  
VPU  OAJ  HOAJ  SING  N  N  42  
VPU  CAD  HAD   SING  N  N  43  
VPU  OAK  HOAK  SING  N  N  44  
VPU  CAE  HAE   SING  N  N  45  
VPU  CAF  HAF   SING  N  N  46  
VPU  CAF  HAFA  SING  N  N  47  
VPU  OAM  HOAM  SING  N  N  48  
VPU  NAO  HNAO  SING  N  N  49  
VPU  CAT  HAT   SING  N  N  50  
VPU  CAU  HAU   SING  N  N  51  
VPU  CAV  HAV   SING  N  N  52  
VPU  CAW  HAW   SING  N  N  53  
VPU  CAX  HAX   SING  N  N  54  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
VPU  SMILES            ACDLabs               10.04  "O=C(O\N=C1/OC(CO)C(O)C(O)C1NC(=O)CCCC)Nc2ccccc2"  
VPU  SMILES_CANONICAL  CACTVS                3.341  "CCCCC(=O)N[C@@H]\1[C@@H](O)[C@H](O)[C@@H](CO)OC\1=N\OC(=O)Nc2ccccc2"  
VPU  SMILES            CACTVS                3.341  "CCCCC(=O)N[CH]1[CH](O)[CH](O)[CH](CO)OC1=NOC(=O)Nc2ccccc2"  
VPU  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "CCCCC(=O)N[C@@H]\1[C@H]([C@@H]([C@H](O/C1=N\OC(=O)Nc2ccccc2)CO)O)O"  
VPU  SMILES            "OpenEye OEToolkits"  1.5.0  "CCCCC(=O)NC1C(C(C(OC1=NOC(=O)Nc2ccccc2)CO)O)O"  
VPU  InChI             InChI                 1.03   "InChI=1S/C18H25N3O7/c1-2-3-9-13(23)20-14-16(25)15(24)12(10-22)27-17(14)21-28-18(26)19-11-7-5-4-6-8-11/h4-8,12,14-16,22,24-25H,2-3,9-10H2,1H3,(H,19,26)(H,20,23)/b21-17-/t12-,14-,15-,16-/m1/s1"  
VPU  InChIKey          InChI                 1.03   NUNQIQQEEPOGDJ-JDOAOKHLSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
VPU  "SYSTEMATIC NAME"  ACDLabs               10.04  "N-[(2Z,3R,4R,5S,6R)-4,5-dihydroxy-6-(hydroxymethyl)-2-{[(phenylcarbamoyl)oxy]imino}tetrahydro-2H-pyran-3-yl]pentanamide (non-preferred name)"  
VPU  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "[[(3R,4R,5S,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-(pentanoylamino)oxan-2-ylidene]amino] N-phenylcarbamate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
VPU  "Create component"      2009-04-15  RCSB  
VPU  "Modify aromatic_flag"  2011-06-04  RCSB  
VPU  "Modify descriptor"     2011-06-04  RCSB  
VPU  "Modify synonyms"       2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     VPU
_pdbx_chem_comp_synonyms.name        N-Valeryl-PUGNAc
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
