data_U5U
# 
_chem_comp.id                                    U5U 
_chem_comp.name                                  "~{N},~{N}-dimethyl-7-phenyl-3-thia-1$l^{4},5,6$l^{4}-triaza-2$l^{3}-palladatricyclo[6.4.0.0^{2,6}]dodeca-1(12),4,6,8,10-pentaen-4-amine" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C15 H15 N4 Pd S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-05-17 
_chem_comp.pdbx_modified_date                    2024-04-26 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        389.791 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     U5U 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   Y 
_chem_comp.pdbx_model_coordinates_db_code        8J8E 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
U5U N16 N1  N  0 1 N N N N N N 5.169  11.336 9.407  ? ? ? N16 U5U 1  
U5U C15 C1  C  0 1 N N N N N N 4.425  10.228 9.543  ? ? ? C15 U5U 2  
U5U N12 N2  N  0 1 N N N N N N 4.870  9.210  10.095 ? ? ? N12 U5U 3  
U5U S17 S1  S  0 1 N N N N N N 2.850  10.027 9.047  ? ? ? S17 U5U 4  
U5U PD1 PD1 PD 0 0 N N N N N N 2.220  8.375  9.566  ? ? ? PD1 U5U 5  
U5U N11 N3  N  0 1 N N N N N N 3.991  8.108  10.104 ? ? ? N11 U5U 6  
U5U C9  C2  C  0 1 N N N N N N 4.435  6.873  10.480 ? ? ? C9  U5U 7  
U5U C14 C3  C  0 1 Y N N N N N 3.230  5.990  10.638 ? ? ? C14 U5U 8  
U5U C2  C4  C  0 1 Y N N N N N 3.118  4.719  11.222 ? ? ? C2  U5U 9  
U5U N13 N4  N  0 1 Y N N N N N 2.055  6.675  10.250 ? ? ? N13 U5U 10 
U5U C8  C5  C  0 1 Y N N N N N 0.857  6.048  10.384 ? ? ? C8  U5U 11 
U5U C7  C6  C  0 1 Y N N N N N 0.742  4.766  10.915 ? ? ? C7  U5U 12 
U5U C3  C7  C  0 1 Y N N N N N 1.885  4.113  11.334 ? ? ? C3  U5U 13 
U5U C1  C8  C  0 1 Y N N N N N 5.886  6.469  10.762 ? ? ? C1  U5U 14 
U5U C4  C9  C  0 1 Y N N N N N 6.955  7.360  10.655 ? ? ? C4  U5U 15 
U5U C5  C10 C  0 1 Y N N N N N 8.268  6.965  10.902 ? ? ? C5  U5U 16 
U5U C6  C11 C  0 1 Y N N N N N 8.579  5.672  11.264 ? ? ? C6  U5U 17 
U5U C10 C12 C  0 1 Y N N N N N 7.545  4.773  11.378 ? ? ? C10 U5U 18 
U5U C11 C13 C  0 1 Y N N N N N 6.244  5.168  11.130 ? ? ? C11 U5U 19 
U5U C12 C14 C  0 1 N N N N N N 4.611  12.687 9.421  ? ? ? C12 U5U 20 
U5U C13 C15 C  0 1 N N N N N N 6.624  11.260 9.267  ? ? ? C13 U5U 21 
U5U H2  H2  H  0 1 N N N N N N 4.001  4.214  11.585 ? ? ? H2  U5U 22 
U5U H3  H3  H  0 1 N N N N N N -0.038 6.563  10.067 ? ? ? H3  U5U 23 
U5U H4  H4  H  0 1 N N N N N N -0.224 4.290  10.998 ? ? ? H4  U5U 24 
U5U H5  H5  H  0 1 N N N N N N 1.812  3.120  11.753 ? ? ? H5  U5U 25 
U5U H6  H6  H  0 1 N N N N N N 6.759  8.384  10.373 ? ? ? H6  U5U 26 
U5U H7  H7  H  0 1 N N N N N N 9.062  7.691  10.807 ? ? ? H7  U5U 27 
U5U H8  H8  H  0 1 N N N N N N 9.600  5.375  11.452 ? ? ? H8  U5U 28 
U5U H9  H9  H  0 1 N N N N N N 7.751  3.752  11.663 ? ? ? H9  U5U 29 
U5U H10 H10 H  0 1 N N N N N N 5.460  4.431  11.226 ? ? ? H10 U5U 30 
U5U H11 H11 H  0 1 N N N N N N 3.518  12.632 9.530  ? ? ? H11 U5U 31 
U5U H12 H12 H  0 1 N N N N N N 5.035  13.250 10.265 ? ? ? H12 U5U 32 
U5U H13 H13 H  0 1 N N N N N N 4.860  13.196 8.478  ? ? ? H13 U5U 33 
U5U H14 H14 H  0 1 N N N N N N 6.938  10.206 9.268  ? ? ? H14 U5U 34 
U5U H15 H15 H  0 1 N N N N N N 6.926  11.732 8.320  ? ? ? H15 U5U 35 
U5U H16 H16 H  0 1 N N N N N N 7.101  11.786 10.107 ? ? ? H16 U5U 36 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
U5U S17 C15 SING N N 1  
U5U S17 PD1 SING N N 2  
U5U C13 N16 SING N N 3  
U5U N16 C12 SING N N 4  
U5U N16 C15 SING N N 5  
U5U C15 N12 DOUB N N 6  
U5U PD1 N11 SING N N 7  
U5U PD1 N13 SING N N 8  
U5U N12 N11 SING N N 9  
U5U N11 C9  DOUB N N 10 
U5U N13 C8  DOUB Y N 11 
U5U N13 C14 SING Y N 12 
U5U C8  C7  SING Y N 13 
U5U C9  C14 SING N N 14 
U5U C9  C1  SING N N 15 
U5U C14 C2  DOUB Y N 16 
U5U C4  C1  DOUB Y N 17 
U5U C4  C5  SING Y N 18 
U5U C1  C11 SING Y N 19 
U5U C5  C6  DOUB Y N 20 
U5U C7  C3  DOUB Y N 21 
U5U C11 C10 DOUB Y N 22 
U5U C2  C3  SING Y N 23 
U5U C6  C10 SING Y N 24 
U5U C2  H2  SING N N 25 
U5U C8  H3  SING N N 26 
U5U C7  H4  SING N N 27 
U5U C3  H5  SING N N 28 
U5U C4  H6  SING N N 29 
U5U C5  H7  SING N N 30 
U5U C6  H8  SING N N 31 
U5U C10 H9  SING N N 32 
U5U C11 H10 SING N N 33 
U5U C12 H11 SING N N 34 
U5U C12 H12 SING N N 35 
U5U C12 H13 SING N N 36 
U5U C13 H14 SING N N 37 
U5U C13 H15 SING N N 38 
U5U C13 H16 SING N N 39 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
U5U InChI            InChI                1.06  "InChI=1S/C15H16N4S.Pd/c1-19(2)15(20)18-17-14(12-8-4-3-5-9-12)13-10-6-7-11-16-13;/h3-11H,1-2H3,(H,18,20);/q;+1/p-1/b17-14+;" 
U5U InChIKey         InChI                1.06  KOLIMVKKIDYABX-KLSJZZFUSA-M                                                                                                  
U5U SMILES_CANONICAL CACTVS               3.385 "CN(C)C(=NN=C(c1ccccc1)c2ccccn2)S[Pd]"                                                                                       
U5U SMILES           CACTVS               3.385 "CN(C)C(=NN=C(c1ccccc1)c2ccccn2)S[Pd]"                                                                                       
U5U SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(C)C1=N[N]2=C(C3=CC=CC=[N]3[Pd]2S1)c4ccccc4"                                                                              
U5U SMILES           "OpenEye OEToolkits" 2.0.7 "CN(C)C1=N[N]2=C(C3=CC=CC=[N]3[Pd]2S1)c4ccccc4"                                                                              
# 
_pdbx_chem_comp_identifier.comp_id           U5U 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "~{N},~{N}-dimethyl-7-phenyl-3-thia-1$l^{4},5,6$l^{4}-triaza-2$l^{3}-palladatricyclo[6.4.0.0^{2,6}]dodeca-1(12),4,6,8,10-pentaen-4-amine" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
U5U "Create component" 2023-05-17 PDBJ 
U5U "Initial release"  2024-05-01 RCSB 
# 
