data_TJU
# 
_chem_comp.id                                    TJU 
_chem_comp.name                                  "[(2~{R},3~{S},5~{R})-5-(4-azanyl-3-methyl-6-oxidanylidene-2~{H}-1,3,5-triazin-1-yl)-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphite" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C9 H17 N4 O7 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-01-06 
_chem_comp.pdbx_modified_date                    2024-01-12 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        324.228 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     TJU 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8C57 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
TJU C2    C1  C 0 1 N N N N N N 24.678 19.381 47.867 2.431  -0.071 0.983  C2    TJU 1  
TJU C4    C2  C 0 1 N N N N N N 26.618 20.590 48.280 4.356  1.127  0.511  C4    TJU 2  
TJU C5    C3  C 0 1 N N N N N N 28.690 20.228 46.888 4.663  1.814  -1.841 C5    TJU 3  
TJU C6    C4  C 0 1 N N N N N N 26.848 18.573 46.972 3.462  -0.352 -1.205 C6    TJU 4  
TJU O2    O1  O 0 1 N N N N N N 23.517 19.126 48.138 1.541  -0.319 1.777  O2    TJU 5  
TJU N3    N1  N 0 1 N N N N N N 25.374 20.328 48.603 3.476  0.660  1.381  N3    TJU 6  
TJU N4    N2  N 0 1 N N N N N N 27.241 21.579 48.989 5.435  1.845  0.937  N4    TJU 7  
TJU N5    N3  N 0 1 N N N N N N 27.403 19.814 47.458 4.171  0.881  -0.824 N5    TJU 8  
TJU N1    N4  N 0 1 N N N N N N 25.387 18.705 46.838 2.342  -0.542 -0.274 N1    TJU 9  
TJU "C1'" C5  C 0 1 N N R N N N 24.673 17.631 46.129 1.133  -1.244 -0.713 "C1'" TJU 10 
TJU "O4'" O2  O 0 1 N N N N N N 24.683 16.519 47.038 -0.037 -0.436 -0.459 "O4'" TJU 11 
TJU "C2'" C6  C 0 1 N N N N N N 25.303 17.174 44.833 0.919  -2.523 0.127  "C2'" TJU 12 
TJU "C3'" C7  C 0 1 N N S N N N 25.844 15.785 45.159 -0.614 -2.603 0.305  "C3'" TJU 13 
TJU "O3'" O3  O 0 1 N N N N N N 25.627 14.872 44.063 -1.124 -3.801 -0.282 "O3'" TJU 14 
TJU "C4'" C8  C 0 1 N N R N N N 24.889 15.342 46.268 -1.144 -1.363 -0.448 "C4'" TJU 15 
TJU "C5'" C9  C 0 1 N N N N N N 25.534 14.359 47.189 -2.337 -0.758 0.295  "C5'" TJU 16 
TJU "O5'" O4  O 0 1 N N N N N N 24.477 13.924 48.079 -2.885 0.314  -0.475 "O5'" TJU 17 
TJU P     P1  P 0 1 N N N N N N 24.884 13.167 49.506 -4.155 1.179  0.006  P     TJU 18 
TJU OP2   O5  O 0 1 N N N N N N 26.253 13.514 49.892 -4.413 2.378  -1.038 OP2   TJU 19 
TJU OP1   O6  O 0 1 N N N N N N 23.764 13.426 50.436 -5.456 0.233  0.070  OP1   TJU 20 
TJU H1    H1  H 0 1 N N N N N N 29.001 21.182 47.338 3.890  2.550  -2.063 H1    TJU 21 
TJU H2    H2  H 0 1 N N N N N N 29.448 19.459 47.098 5.552  2.321  -1.468 H2    TJU 22 
TJU H3    H3  H 0 1 N N N N N N 28.586 20.353 45.800 4.912  1.263  -2.748 H3    TJU 23 
TJU H4    H4  H 0 1 N N N N N N 27.079 17.765 47.682 3.080  -0.257 -2.222 H4    TJU 24 
TJU H5    H5  H 0 1 N N N N N N 27.286 18.335 45.991 4.143  -1.201 -1.146 H5    TJU 25 
TJU H6    H6  H 0 1 N N N N N N 26.748 22.062 49.713 5.560  2.016  1.884  H6    TJU 26 
TJU H7    H7  H 0 1 N N N N N N 28.190 21.819 48.784 6.076  2.185  0.294  H7    TJU 27 
TJU H8    H8  H 0 1 N N N N N N 23.638 17.946 45.932 1.202  -1.490 -1.772 H8    TJU 28 
TJU H9    H9  H 0 1 N N N N N N 26.117 17.851 44.533 1.287  -3.398 -0.409 H9    TJU 29 
TJU H10   H10 H 0 1 N N N N N N 24.553 17.124 44.030 1.412  -2.431 1.095  H10   TJU 30 
TJU H11   H11 H 0 1 N N N N N N 26.889 15.817 45.502 -0.879 -2.551 1.361  H11   TJU 31 
TJU H12   H12 H 0 1 N N N N N N 25.972 14.016 44.290 -0.776 -4.612 0.113  H12   TJU 32 
TJU H13   H13 H 0 1 N N N N N N 23.954 14.944 45.846 -1.426 -1.629 -1.467 H13   TJU 33 
TJU H14   H14 H 0 1 N N N N N N 25.937 13.506 46.623 -3.098 -1.524 0.444  H14   TJU 34 
TJU H15   H15 H 0 1 N N N N N N 26.345 14.838 47.758 -2.008 -0.380 1.263  H15   TJU 35 
TJU H16   H16 H 0 1 N N N N N N 26.809 12.747 49.814 -5.165 2.942  -0.810 H16   TJU 36 
TJU H17   H17 H 0 1 N N N N N N 23.284 12.620 50.587 -5.690 -0.171 -0.777 H17   TJU 37 
TJU O1    O7  O 0 1 N Y N N N N 24.866 11.622 49.102 -3.888 1.743  1.348  O1    TJU 38 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
TJU "O3'" "C3'" SING N N 1  
TJU "C2'" "C3'" SING N N 2  
TJU "C2'" "C1'" SING N N 3  
TJU "C3'" "C4'" SING N N 4  
TJU "C1'" N1    SING N N 5  
TJU "C1'" "O4'" SING N N 6  
TJU "C4'" "O4'" SING N N 7  
TJU "C4'" "C5'" SING N N 8  
TJU N1    C6    SING N N 9  
TJU N1    C2    SING N N 10 
TJU C5    N5    SING N N 11 
TJU C6    N5    SING N N 12 
TJU "C5'" "O5'" SING N N 13 
TJU N5    C4    SING N N 14 
TJU C2    O2    DOUB N N 15 
TJU C2    N3    SING N N 16 
TJU "O5'" P     SING N N 17 
TJU C4    N3    DOUB N N 18 
TJU C4    N4    SING N N 19 
TJU P     OP2   SING N N 20 
TJU P     OP1   SING N N 21 
TJU C5    H1    SING N N 22 
TJU C5    H2    SING N N 23 
TJU C5    H3    SING N N 24 
TJU C6    H4    SING N N 25 
TJU C6    H5    SING N N 26 
TJU N4    H6    SING N N 27 
TJU N4    H7    SING N N 28 
TJU "C1'" H8    SING N N 29 
TJU "C2'" H9    SING N N 30 
TJU "C2'" H10   SING N N 31 
TJU "C3'" H11   SING N N 32 
TJU "O3'" H12   SING N N 33 
TJU "C4'" H13   SING N N 34 
TJU "C5'" H14   SING N N 35 
TJU "C5'" H15   SING N N 36 
TJU OP2   H16   SING N N 37 
TJU OP1   H17   SING N N 38 
TJU P     O1    DOUB N N 39 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
TJU InChI            InChI                1.06  "InChI=1S/C9H17N4O7P/c1-12-4-13(9(15)11-8(12)10)7-2-5(14)6(20-7)3-19-21(16,17)18/h5-7,14H,2-4H2,1H3,(H2,10,11,15)(H2,16,17,18)/t5-,6+,7+/m0/s1" 
TJU InChIKey         InChI                1.06  DIYNYEYZCDSJGH-RRKCRQDMSA-N                                                                                                                     
TJU SMILES_CANONICAL CACTVS               3.385 "CN1CN([C@H]2C[C@H](O)[C@@H](CO[P](O)(O)=O)O2)C(=O)N=C1N"                                                                                       
TJU SMILES           CACTVS               3.385 "CN1CN([CH]2C[CH](O)[CH](CO[P](O)(O)=O)O2)C(=O)N=C1N"                                                                                           
TJU SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1CN(C(=O)N=C1N)[C@H]2C[C@@H]([C@H](O2)COP(=O)(O)O)O"                                                                                         
TJU SMILES           "OpenEye OEToolkits" 2.0.7 "CN1CN(C(=O)N=C1N)C2CC(C(O2)COP(=O)(O)O)O"                                                                                                      
# 
_pdbx_chem_comp_identifier.comp_id           TJU 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "[(2~{R},3~{S},5~{R})-5-(4-azanyl-3-methyl-6-oxidanylidene-2~{H}-1,3,5-triazin-1-yl)-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
TJU "Create component" 2023-01-06 PDBE 
TJU "Initial release"  2024-01-17 RCSB 
# 
