data_SYU
# 
_chem_comp.id                                    SYU 
_chem_comp.name                                  "3-[[2,4-bis(trifluoromethyl)phenyl]methyl]-5-(hydroxymethyl)-1~{H}-imidazole-2-thione" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C13 H10 F6 N2 O S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-12-20 
_chem_comp.pdbx_modified_date                    2024-07-05 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        356.287 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     SYU 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8C0S 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
SYU C13 C1  C 0 1 N N N N N N 17.182 0.132  -5.186 -4.799 -1.852 1.504  C13 SYU 1  
SYU C12 C2  C 0 1 N N N N N N 20.089 -8.853 -3.678 3.745  -1.864 -0.072 C12 SYU 2  
SYU C10 C3  C 0 1 Y N N N N N 21.031 -6.828 -2.500 2.546  0.316  0.195  C10 SYU 3  
SYU C01 C4  C 0 1 N N N N N N 20.720 -3.040 -2.833 -1.108 1.266  0.134  C01 SYU 4  
SYU N01 N1  N 0 1 N N N N N N 19.428 -0.100 -4.393 -3.944 -0.798 -0.688 N01 SYU 5  
SYU O01 O1  O 0 1 N N N N N N 17.536 1.356  -4.560 -6.122 -1.312 1.462  O01 SYU 6  
SYU C02 C5  C 0 1 N N N N N N 18.248 -0.707 -4.548 -3.877 -0.988 0.683  C02 SYU 7  
SYU N02 N2  N 0 1 N N N N N N 19.901 -2.030 -3.494 -2.267 0.374  0.071  N02 SYU 8  
SYU S02 S1  S 0 1 N N N N N N 21.828 -0.067 -3.726 -2.607 0.579  -2.631 S02 SYU 9  
SYU C03 C6  C 0 1 N N N N N N 18.408 -1.971 -3.969 -2.856 -0.275 1.145  C03 SYU 10 
SYU C04 C7  C 0 1 Y N N N N N 20.215 -7.319 -3.512 2.480  -1.048 -0.016 C04 SYU 11 
SYU C05 C8  C 0 1 N N N N N N 20.401 -0.744 -3.834 -2.950 0.040  -1.043 C05 SYU 12 
SYU C06 C9  C 0 1 Y N N N N N 21.203 -5.458 -2.279 1.385  1.065  0.247  C06 SYU 13 
SYU C07 C10 C 0 1 Y N N N N N 20.514 -4.542 -3.108 0.158  0.450  0.079  C07 SYU 14 
SYU C08 C11 C 0 1 Y N N N N N 19.686 -5.024 -4.134 0.092  -0.914 -0.139 C08 SYU 15 
SYU C09 C12 C 0 1 Y N N N N N 19.539 -6.401 -4.335 1.252  -1.664 -0.178 C09 SYU 16 
SYU C11 C13 C 0 1 N N N N N N 22.154 -5.068 -1.101 1.456  2.551  0.484  C11 SYU 17 
SYU F01 F1  F 0 1 N N N N N N 21.427 -5.033 0.048  0.835  2.861  1.698  F01 SYU 18 
SYU F02 F2  F 0 1 N N N N N N 23.119 -6.039 -0.967 2.796  2.952  0.530  F02 SYU 19 
SYU F03 F3  F 0 1 N N N N N N 22.782 -3.847 -1.190 0.805  3.221  -0.558 F03 SYU 20 
SYU F13 F4  F 0 1 N N N N N N 21.078 -9.347 -4.490 3.555  -2.963 -0.917 F13 SYU 21 
SYU F14 F5  F 0 1 N N N N N N 18.886 -9.134 -4.237 4.790  -1.073 -0.562 F14 SYU 22 
SYU F15 F6  F 0 1 N N N N N N 20.093 -9.526 -2.480 4.065  -2.316 1.214  F15 SYU 23 
SYU H1  H1  H 0 1 N N N N N N 16.168 -0.200 -4.920 -4.450 -1.877 2.537  H1  SYU 24 
SYU H2  H2  H 0 1 N N N N N N 17.278 0.175  -6.281 -4.807 -2.864 1.099  H2  SYU 25 
SYU H3  H3  H 0 1 N N N N N N 21.550 -7.528 -1.862 3.504  0.797  0.325  H3  SYU 26 
SYU H4  H4  H 0 1 N N N N N N 21.764 -2.815 -3.096 -1.133 1.955  -0.710 H4  SYU 27 
SYU H5  H5  H 0 1 N N N N N N 20.576 -2.899 -1.752 -1.135 1.832  1.065  H5  SYU 28 
SYU H6  H6  H 0 1 N N N N N N 16.947 2.043  -4.851 -6.770 -1.818 1.970  H6  SYU 29 
SYU H7  H7  H 0 1 N N N N N N 17.660 -2.744 -3.870 -2.540 -0.211 2.176  H7  SYU 30 
SYU H9  H9  H 0 1 N N N N N N 19.160 -4.329 -4.771 -0.866 -1.394 -0.269 H9  SYU 31 
SYU H10 H10 H 0 1 N N N N N N 18.901 -6.761 -5.129 1.201  -2.729 -0.348 H10 SYU 32 
SYU H11 H11 H 0 1 N N N N N N 19.558 0.841  -4.705 -4.592 -1.200 -1.289 H11 SYU 33 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
SYU C13 O01 SING N N 1  
SYU C13 C02 SING N N 2  
SYU C02 N01 SING N N 3  
SYU C02 C03 DOUB N N 4  
SYU F13 C12 SING N N 5  
SYU N01 C05 SING N N 6  
SYU C09 C08 DOUB Y N 7  
SYU C09 C04 SING Y N 8  
SYU F14 C12 SING N N 9  
SYU C08 C07 SING Y N 10 
SYU C03 N02 SING N N 11 
SYU C05 S02 DOUB N N 12 
SYU C05 N02 SING N N 13 
SYU C12 C04 SING N N 14 
SYU C12 F15 SING N N 15 
SYU C04 C10 DOUB Y N 16 
SYU N02 C01 SING N N 17 
SYU C07 C01 SING N N 18 
SYU C07 C06 DOUB Y N 19 
SYU C10 C06 SING Y N 20 
SYU C06 C11 SING N N 21 
SYU F03 C11 SING N N 22 
SYU C11 F02 SING N N 23 
SYU C11 F01 SING N N 24 
SYU C13 H1  SING N N 25 
SYU C13 H2  SING N N 26 
SYU C10 H3  SING N N 27 
SYU C01 H4  SING N N 28 
SYU C01 H5  SING N N 29 
SYU O01 H6  SING N N 30 
SYU C03 H7  SING N N 31 
SYU C08 H9  SING N N 32 
SYU C09 H10 SING N N 33 
SYU N01 H11 SING N N 34 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
SYU InChI            InChI                1.06  "InChI=1S/C13H10F6N2OS/c14-12(15,16)8-2-1-7(10(3-8)13(17,18)19)4-21-5-9(6-22)20-11(21)23/h1-3,5,22H,4,6H2,(H,20,23)" 
SYU InChIKey         InChI                1.06  WXKONROFPLKHOA-UHFFFAOYSA-N                                                                                          
SYU SMILES_CANONICAL CACTVS               3.385 "OCC1=CN(Cc2ccc(cc2C(F)(F)F)C(F)(F)F)C(=S)N1"                                                                        
SYU SMILES           CACTVS               3.385 "OCC1=CN(Cc2ccc(cc2C(F)(F)F)C(F)(F)F)C(=S)N1"                                                                        
SYU SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1C(F)(F)F)C(F)(F)F)CN2C=C(NC2=S)CO"                                                                        
SYU SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1C(F)(F)F)C(F)(F)F)CN2C=C(NC2=S)CO"                                                                        
# 
_pdbx_chem_comp_identifier.comp_id           SYU 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "3-[[2,4-bis(trifluoromethyl)phenyl]methyl]-5-(hydroxymethyl)-1~{H}-imidazole-2-thione" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
SYU "Create component" 2022-12-20 PDBE 
SYU "Initial release"  2024-07-10 RCSB 
# 
