data_RVU
# 
_chem_comp.id                                    RVU 
_chem_comp.name                                  "~{N}-(1~{H}-benzimidazol-2-yl)-1-(2-methoxy-5-methyl-phenyl)-5-oxidanylidene-pyrrolidine-3-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C20 H20 N4 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-12-07 
_chem_comp.pdbx_modified_date                    2023-09-08 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        364.398 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     RVU 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8BUE 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
RVU C8   C1  C 0 1 Y N N -66.351 25.519 0.636   2.993  -1.300 0.144  C8   RVU 1  
RVU C9   C2  C 0 1 Y N N -66.329 26.603 1.506   3.956  -2.296 0.167  C9   RVU 2  
RVU C1   C3  C 0 1 N N S -64.985 22.844 -2.763  0.465  2.260  -0.798 C1   RVU 3  
RVU C2   C4  C 0 1 N N N -64.008 23.137 -3.872  -0.734 1.355  -0.688 C2   RVU 4  
RVU C3   C5  C 0 1 Y N N -63.877 23.756 -6.227  -3.017 1.016  -0.164 C3   RVU 5  
RVU C4   C6  C 0 1 N N N -65.525 24.053 -2.054  1.701  1.482  -1.301 C4   RVU 6  
RVU C5   C7  C 0 1 N N N -64.641 22.628 -0.384  1.995  1.724  0.990  C5   RVU 7  
RVU C6   C8  C 0 1 N N N -64.317 21.961 -1.693  0.934  2.729  0.599  C6   RVU 8  
RVU C10  C9  C 0 1 Y N N -65.129 27.127 1.929   5.288  -1.974 -0.017 C10  RVU 9  
RVU C11  C10 C 0 1 Y N N -63.905 26.599 1.511   5.664  -0.661 -0.225 C11  RVU 10 
RVU C12  C11 C 0 1 Y N N -63.931 25.525 0.636   4.710  0.339  -0.250 C12  RVU 11 
RVU C13  C12 C 0 1 N N N -62.599 27.193 1.972   7.118  -0.317 -0.426 C13  RVU 12 
RVU C14  C13 C 0 1 N N N -68.737 25.532 0.422   1.368  -2.994 0.523  C14  RVU 13 
RVU C15  C14 C 0 1 Y N N -62.316 24.373 -7.640  -4.307 -0.781 -0.235 C15  RVU 14 
RVU C16  C15 C 0 1 Y N N -63.478 23.991 -8.311  -5.048 0.324  0.217  C16  RVU 15 
RVU C17  C16 C 0 1 Y N N -61.184 24.807 -8.301  -4.917 -2.021 -0.356 C17  RVU 16 
RVU C18  C17 C 0 1 Y N N -61.249 24.851 -9.674  -6.251 -2.164 -0.037 C18  RVU 17 
RVU C19  C18 C 0 1 Y N N -62.400 24.474 -10.362 -6.989 -1.076 0.405  C19  RVU 18 
RVU C20  C19 C 0 1 Y N N -63.523 24.042 -9.699  -6.399 0.161  0.536  C20  RVU 19 
RVU C7   C20 C 0 1 Y N N -65.131 24.980 0.194   3.372  0.025  -0.066 C7   RVU 20 
RVU N1   N1  N 0 1 N N N -64.551 23.457 -5.068  -1.915 1.848  -0.265 N1   RVU 21 
RVU N2   N2  N 0 1 N N N -65.108 23.873 -0.681  2.402  1.036  -0.091 N2   RVU 22 
RVU N3   N3  N 0 1 Y N N -62.602 24.209 -6.299  -3.024 -0.315 -0.466 N3   RVU 23 
RVU N4   N4  N 0 1 Y N N -64.452 23.603 -7.398  -4.205 1.388  0.239  N4   RVU 24 
RVU O1   O1  O 0 1 N N N -64.510 22.185 0.744   2.418  1.562  2.116  O1   RVU 25 
RVU O2   O2  O 0 1 N N N -67.476 24.922 0.150   1.682  -1.615 0.319  O2   RVU 26 
RVU O3   O3  O 0 1 N N N -62.801 23.080 -3.703  -0.637 0.182  -0.981 O3   RVU 27 
RVU H91  H1  H 0 1 N N N -67.257 27.035 1.851   3.666  -3.323 0.330  H91  RVU 28 
RVU H11  H2  H 0 1 N N N -65.831 22.282 -3.186  0.251  3.112  -1.443 H11  RVU 29 
RVU H41  H3  H 0 1 N N N -65.097 24.975 -2.474  1.390  0.623  -1.895 H41  RVU 30 
RVU H42  H4  H 0 1 N N N -66.622 24.091 -2.127  2.344  2.136  -1.890 H42  RVU 31 
RVU H62  H5  H 0 1 N N N -64.729 20.941 -1.720  1.360  3.730  0.543  H62  RVU 32 
RVU H61  H6  H 0 1 N N N -63.229 21.921 -1.848  0.106  2.705  1.308  H61  RVU 33 
RVU H101 H7  H 0 0 N N N -65.134 27.971 2.603   6.037  -2.752 0.002  H101 RVU 34 
RVU H121 H8  H 0 0 N N N -62.999 25.102 0.290   5.006  1.365  -0.412 H121 RVU 35 
RVU H131 H9  H 0 0 N N N -62.289 27.985 1.274   7.359  -0.364 -1.488 H131 RVU 36 
RVU H133 H10 H 0 0 N N N -62.725 27.619 2.978   7.308  0.690  -0.054 H133 RVU 37 
RVU H132 H11 H 0 0 N N N -61.829 26.408 2.000   7.738  -1.029 0.119  H132 RVU 38 
RVU H141 H12 H 0 0 N N N -69.540 24.934 -0.034  0.291  -3.106 0.649  H141 RVU 39 
RVU H142 H13 H 0 0 N N N -68.892 25.584 1.510   1.695  -3.573 -0.340 H142 RVU 40 
RVU H143 H14 H 0 0 N N N -68.751 26.548 0.000   1.878  -3.354 1.417  H143 RVU 41 
RVU H171 H15 H 0 0 N N N -60.292 25.097 -7.766  -4.348 -2.872 -0.700 H171 RVU 42 
RVU H181 H16 H 0 0 N N N -60.387 25.186 -10.232 -6.725 -3.130 -0.133 H181 RVU 43 
RVU H191 H17 H 0 0 N N N -62.410 24.522 -11.441 -8.033 -1.201 0.652  H191 RVU 44 
RVU H201 H18 H 0 0 N N N -64.412 23.751 -10.239 -6.979 1.004  0.881  H201 RVU 45 
RVU H12  H19 H 0 1 N N N -65.550 23.478 -5.114  -1.992 2.786  -0.031 H12  RVU 46 
RVU H31  H20 H 0 1 N N N -61.988 24.389 -5.531  -2.271 -0.837 -0.784 H31  RVU 47 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
RVU C19 C20  DOUB Y N 1  
RVU C19 C18  SING Y N 2  
RVU C20 C16  SING Y N 3  
RVU C18 C17  DOUB Y N 4  
RVU C16 C15  DOUB Y N 5  
RVU C16 N4   SING Y N 6  
RVU C17 C15  SING Y N 7  
RVU C15 N3   SING Y N 8  
RVU N4  C3   DOUB Y N 9  
RVU N3  C3   SING Y N 10 
RVU C3  N1   SING N N 11 
RVU N1  C2   SING N N 12 
RVU C2  O3   DOUB N N 13 
RVU C2  C1   SING N N 14 
RVU C1  C4   SING N N 15 
RVU C1  C6   SING N N 16 
RVU C4  N2   SING N N 17 
RVU C6  C5   SING N N 18 
RVU N2  C5   SING N N 19 
RVU N2  C7   SING N N 20 
RVU C5  O1   DOUB N N 21 
RVU O2  C14  SING N N 22 
RVU O2  C8   SING N N 23 
RVU C7  C12  DOUB Y N 24 
RVU C7  C8   SING Y N 25 
RVU C12 C11  SING Y N 26 
RVU C8  C9   DOUB Y N 27 
RVU C9  C10  SING Y N 28 
RVU C11 C10  DOUB Y N 29 
RVU C11 C13  SING N N 30 
RVU C9  H91  SING N N 31 
RVU C1  H11  SING N N 32 
RVU C4  H41  SING N N 33 
RVU C4  H42  SING N N 34 
RVU C6  H62  SING N N 35 
RVU C6  H61  SING N N 36 
RVU C10 H101 SING N N 37 
RVU C12 H121 SING N N 38 
RVU C13 H131 SING N N 39 
RVU C13 H133 SING N N 40 
RVU C13 H132 SING N N 41 
RVU C14 H141 SING N N 42 
RVU C14 H142 SING N N 43 
RVU C14 H143 SING N N 44 
RVU C17 H171 SING N N 45 
RVU C18 H181 SING N N 46 
RVU C19 H191 SING N N 47 
RVU C20 H201 SING N N 48 
RVU N1  H12  SING N N 49 
RVU N3  H31  SING N N 50 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
RVU InChI            InChI                1.06    "InChI=1S/C20H20N4O3/c1-12-7-8-17(27-2)16(9-12)24-11-13(10-18(24)25)19(26)23-20-21-14-5-3-4-6-15(14)22-20/h3-9,13H,10-11H2,1-2H3,(H2,21,22,23,26)/t13-/m0/s1" 
RVU InChIKey         InChI                1.06    XSNQFQPVHIAZMA-ZDUSSCGKSA-N                                                                                                                                   
RVU SMILES_CANONICAL CACTVS               3.385   "COc1ccc(C)cc1N2C[C@H](CC2=O)C(=O)Nc3[nH]c4ccccc4n3"                                                                                                          
RVU SMILES           CACTVS               3.385   "COc1ccc(C)cc1N2C[CH](CC2=O)C(=O)Nc3[nH]c4ccccc4n3"                                                                                                           
RVU SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "Cc1ccc(c(c1)N2CC(CC2=O)C(=O)Nc3[nH]c4ccccc4n3)OC"                                                                                                            
RVU SMILES           "OpenEye OEToolkits" 3.1.0.0 "Cc1ccc(c(c1)N2CC(CC2=O)C(=O)Nc3[nH]c4ccccc4n3)OC"                                                                                                            
# 
_pdbx_chem_comp_identifier.comp_id           RVU 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   3.1.0.0 
_pdbx_chem_comp_identifier.identifier        "~{N}-(1~{H}-benzimidazol-2-yl)-1-(2-methoxy-5-methyl-phenyl)-5-oxidanylidene-pyrrolidine-3-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
RVU "Create component" 2022-12-07 PDBE 
RVU "Initial release"  2023-09-13 RCSB 
# 
