data_R8U
# 
_chem_comp.id                                    R8U 
_chem_comp.name                                  Zoliflodacin 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H22 F N5 O7" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "(4'~{R},6'~{S},7'~{S})-17'-fluoranyl-4',6'-dimethyl-13'-[(4~{S})-4-methyl-2-oxidanylidene-1,3-oxazolidin-3-yl]spiro[1,3-diazinane-5,8'-5,15-dioxa-2,14-diazatetracyclo[8.7.0.0^{2,7}.0^{12,16}]heptadeca-1(17),10,12(16),13-tetraene]-2,4,6-trione" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-11-26 
_chem_comp.pdbx_modified_date                    2023-02-03 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        487.438 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     R8U 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8BP2 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
R8U C1  C1  C 0 1 N N S 12.885 47.305 46.584 2.737  0.545  -0.401 C1  R8U 1  
R8U C2  C2  C 0 1 N N S 11.724 46.335 46.259 2.458  0.985  -1.832 C2  R8U 2  
R8U C3  C3  C 0 1 N N N 11.481 45.278 47.313 3.582  0.499  -2.764 C3  R8U 3  
R8U O1  O1  O 0 1 N N N 11.968 45.611 45.037 2.436  2.412  -1.957 O1  R8U 4  
R8U C4  C4  C 0 1 N N R 12.203 46.457 43.900 1.603  3.102  -1.027 C4  R8U 5  
R8U C5  C5  C 0 1 N N N 12.348 45.556 42.696 1.737  4.611  -1.227 C5  R8U 6  
R8U C6  C6  C 0 1 N N N 13.421 47.309 44.195 2.086  2.724  0.380  C6  R8U 7  
R8U N1  N1  N 0 1 N N N 13.174 48.122 45.387 1.871  1.280  0.541  N1  R8U 8  
R8U C7  C7  C 0 1 Y N N 13.139 49.569 45.442 0.525  0.927  0.465  C7  R8U 9  
R8U C8  C8  C 0 1 Y N N 13.363 50.194 46.675 0.086  -0.227 -0.180 C8  R8U 10 
R8U C9  C9  C 0 1 N N N 13.612 49.331 47.879 1.059  -1.240 -0.740 C9  R8U 11 
R8U C10 C10 C 0 1 N N N 12.624 48.167 47.877 2.453  -0.942 -0.184 C10 R8U 12 
R8U C11 C11 C 0 1 N N N 11.222 48.769 47.935 3.470  -1.834 -0.830 C11 R8U 13 
R8U O2  O2  O 0 1 N N N 10.673 49.217 46.951 3.324  -2.201 -1.974 O2  R8U 14 
R8U N2  N2  N 0 1 N N N 10.566 48.792 49.135 4.522  -2.302 -0.135 N2  R8U 15 
R8U C12 C12 C 0 1 N N N 10.986 48.220 50.297 4.577  -2.200 1.201  C12 R8U 16 
R8U O3  O3  O 0 1 N N N 10.362 48.350 51.330 5.587  -2.533 1.785  O3  R8U 17 
R8U N3  N3  N 0 1 N N N 12.149 47.501 50.226 3.525  -1.753 1.906  N3  R8U 18 
R8U C13 C13 C 0 1 N N N 13.004 47.430 49.153 2.453  -1.215 1.303  C13 R8U 19 
R8U O4  O4  O 0 1 N N N 14.044 46.808 49.226 1.474  -0.958 1.963  O4  R8U 20 
R8U C14 C14 C 0 1 Y N N 13.297 51.581 46.798 -1.250 -0.537 -0.316 C14 R8U 21 
R8U C15 C15 C 0 1 Y N N 13.027 52.358 45.669 -2.175 0.315  0.285  C15 R8U 22 
R8U C16 C16 C 0 1 Y N N 12.820 51.730 44.448 -1.749 1.451  1.008  C16 R8U 23 
R8U O5  O5  O 0 1 Y N N 12.584 52.674 43.511 -2.846 2.059  1.473  O5  R8U 24 
R8U N4  N4  N 0 1 Y N N 12.641 53.942 44.178 -3.994 1.341  1.054  N4  R8U 25 
R8U C17 C17 C 0 1 Y N N 12.906 53.736 45.443 -3.631 0.301  0.349  C17 R8U 26 
R8U N5  N5  N 0 1 N N N 13.006 54.852 46.320 -4.478 -0.641 -0.230 N5  R8U 27 
R8U C18 C18 C 0 1 N N S 12.603 56.198 45.851 -4.050 -1.875 -0.905 C18 R8U 28 
R8U C19 C19 C 0 1 N N N 11.107 56.324 45.625 -3.299 -2.787 0.068  C19 R8U 29 
R8U C20 C20 C 0 1 N N N 13.120 57.053 47.014 -5.373 -2.530 -1.346 C20 R8U 30 
R8U O6  O6  O 0 1 N N N 13.262 56.131 48.121 -6.397 -1.604 -0.879 O6  R8U 31 
R8U C21 C21 C 0 1 N N N 13.443 54.883 47.625 -5.816 -0.572 -0.257 C21 R8U 32 
R8U O7  O7  O 0 1 N N N 13.961 54.012 48.293 -6.443 0.345  0.234  O7  R8U 33 
R8U C22 C22 C 0 1 Y N N 12.862 50.358 44.316 -0.397 1.757  1.119  C22 R8U 34 
R8U F1  F1  F 0 1 N N N 12.651 49.814 43.101 -0.019 2.810  1.875  F1  R8U 35 
R8U H1  H1  H 0 1 N N N 13.771 46.687 46.791 3.779  0.757  -0.146 H1  R8U 36 
R8U H2  H2  H 0 1 N N N 10.806 46.931 46.150 1.509  0.582  -2.179 H2  R8U 37 
R8U H5  H3  H 0 1 N N N 11.286 45.763 48.281 3.540  -0.587 -2.846 H5  R8U 38 
R8U H3  H4  H 0 1 N N N 10.612 44.668 47.027 3.453  0.943  -3.751 H3  R8U 39 
R8U H4  H5  H 0 1 N N N 12.369 44.634 47.398 4.547  0.796  -2.355 H4  R8U 40 
R8U H6  H6  H 0 1 N N N 11.339 47.119 43.744 0.567  2.802  -1.155 H6  R8U 41 
R8U H9  H7  H 0 1 N N N 11.423 44.977 42.557 2.782  4.901  -1.112 H9  R8U 42 
R8U H7  H8  H 0 1 N N N 12.536 46.167 41.801 1.394  4.878  -2.226 H7  R8U 43 
R8U H8  H9  H 0 1 N N N 13.191 44.867 42.853 1.132  5.131  -0.484 H8  R8U 44 
R8U H10 H10 H 0 1 N N N 14.290 46.658 44.370 3.162  2.928  0.439  H10 R8U 45 
R8U H11 H11 H 0 1 N N N 13.623 47.968 43.338 1.580  3.307  1.129  H11 R8U 46 
R8U H12 H12 H 0 1 N N N 14.640 48.941 47.845 0.753  -2.241 -0.430 H12 R8U 47 
R8U H13 H13 H 0 1 N N N 13.476 49.927 48.793 1.068  -1.186 -1.825 H13 R8U 48 
R8U H14 H14 H 0 1 N N N 9.692  49.277 49.161 5.252  -2.721 -0.613 H14 R8U 49 
R8U H15 H15 H 0 1 N N N 12.402 46.974 51.037 3.546  -1.806 2.873  H15 R8U 50 
R8U H16 H16 H 0 1 N N N 13.453 52.051 47.758 -1.566 -1.419 -0.853 H16 R8U 51 
R8U H17 H17 H 0 1 N N N 13.144 56.460 44.930 -3.430 -1.644 -1.770 H17 R8U 52 
R8U H18 H18 H 0 1 N N N 10.872 57.342 45.279 -4.008 -3.254 0.750  H18 R8U 53 
R8U H19 H19 H 0 1 N N N 10.789 55.596 44.864 -2.770 -3.559 -0.492 H19 R8U 54 
R8U H20 H20 H 0 1 N N N 10.576 56.126 46.568 -2.581 -2.197 0.638  H20 R8U 55 
R8U H21 H21 H 0 1 N N N 14.090 57.505 46.760 -5.410 -2.623 -2.431 H21 R8U 56 
R8U H22 H22 H 0 1 N N N 12.399 57.846 47.261 -5.495 -3.504 -0.873 H22 R8U 57 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
R8U C5  C4  SING N N 1  
R8U F1  C22 SING N N 2  
R8U O5  N4  SING Y N 3  
R8U O5  C16 SING Y N 4  
R8U C4  C6  SING N N 5  
R8U C4  O1  SING N N 6  
R8U N4  C17 DOUB Y N 7  
R8U C6  N1  SING N N 8  
R8U C22 C16 SING Y N 9  
R8U C22 C7  DOUB Y N 10 
R8U C16 C15 DOUB Y N 11 
R8U O1  C2  SING N N 12 
R8U N1  C7  SING N N 13 
R8U N1  C1  SING N N 14 
R8U C7  C8  SING Y N 15 
R8U C17 C15 SING Y N 16 
R8U C17 N5  SING N N 17 
R8U C19 C18 SING N N 18 
R8U C15 C14 SING Y N 19 
R8U C18 N5  SING N N 20 
R8U C18 C20 SING N N 21 
R8U C2  C1  SING N N 22 
R8U C2  C3  SING N N 23 
R8U N5  C21 SING N N 24 
R8U C1  C10 SING N N 25 
R8U C8  C14 DOUB Y N 26 
R8U C8  C9  SING N N 27 
R8U O2  C11 DOUB N N 28 
R8U C20 O6  SING N N 29 
R8U C21 O6  SING N N 30 
R8U C21 O7  DOUB N N 31 
R8U C10 C9  SING N N 32 
R8U C10 C11 SING N N 33 
R8U C10 C13 SING N N 34 
R8U C11 N2  SING N N 35 
R8U N2  C12 SING N N 36 
R8U C13 O4  DOUB N N 37 
R8U C13 N3  SING N N 38 
R8U N3  C12 SING N N 39 
R8U C12 O3  DOUB N N 40 
R8U C1  H1  SING N N 41 
R8U C2  H2  SING N N 42 
R8U C3  H5  SING N N 43 
R8U C3  H3  SING N N 44 
R8U C3  H4  SING N N 45 
R8U C4  H6  SING N N 46 
R8U C5  H9  SING N N 47 
R8U C5  H7  SING N N 48 
R8U C5  H8  SING N N 49 
R8U C6  H10 SING N N 50 
R8U C6  H11 SING N N 51 
R8U C9  H12 SING N N 52 
R8U C9  H13 SING N N 53 
R8U N2  H14 SING N N 54 
R8U N3  H15 SING N N 55 
R8U C14 H16 SING N N 56 
R8U C18 H17 SING N N 57 
R8U C19 H18 SING N N 58 
R8U C19 H19 SING N N 59 
R8U C19 H20 SING N N 60 
R8U C20 H21 SING N N 61 
R8U C20 H22 SING N N 62 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
R8U InChI            InChI                1.06    "InChI=1S/C22H22FN5O7/c1-8-7-33-21(32)28(8)17-12-4-11-5-22(18(29)24-20(31)25-19(22)30)16-10(3)34-9(2)6-27(16)14(11)13(23)15(12)35-26-17/h4,8-10,16H,5-7H2,1-3H3,(H2,24,25,29,30,31)/t8-,9+,10-,16+/m0/s1" 
R8U InChIKey         InChI                1.06    ZSWMIFNWDQEXDT-ZESJGQACSA-N                                                                                                                                                                               
R8U SMILES_CANONICAL CACTVS               3.385   "C[C@@H]1CN2[C@H]([C@H](C)O1)C3(Cc4cc5c(onc5N6[C@@H](C)COC6=O)c(F)c24)C(=O)NC(=O)NC3=O"                                                                                                                   
R8U SMILES           CACTVS               3.385   "C[CH]1CN2[CH]([CH](C)O1)C3(Cc4cc5c(onc5N6[CH](C)COC6=O)c(F)c24)C(=O)NC(=O)NC3=O"                                                                                                                         
R8U SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "C[C@@H]1CN2c3c(cc4c(c3F)onc4N5[C@H](COC5=O)C)CC6([C@H]2[C@@H](O1)C)C(=O)NC(=O)NC6=O"                                                                                                                     
R8U SMILES           "OpenEye OEToolkits" 3.1.0.0 "CC1CN2c3c(cc4c(c3F)onc4N5C(COC5=O)C)CC6(C2C(O1)C)C(=O)NC(=O)NC6=O"                                                                                                                                       
# 
_pdbx_chem_comp_identifier.comp_id           R8U 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   3.1.0.0 
_pdbx_chem_comp_identifier.identifier        "(4'~{R},6'~{S},7'~{S})-17'-fluoranyl-4',6'-dimethyl-13'-[(4~{S})-4-methyl-2-oxidanylidene-1,3-oxazolidin-3-yl]spiro[1,3-diazinane-5,8'-5,15-dioxa-2,14-diazatetracyclo[8.7.0.0^{2,7}.0^{12,16}]heptadeca-1(17),10,12(16),13-tetraene]-2,4,6-trione" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
R8U "Create component" 2022-11-26 PDBE 
R8U "Initial release"  2023-02-08 RCSB 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      R8U 
_pdbx_chem_comp_synonyms.name         "(4'~{R},6'~{S},7'~{S})-17'-fluoranyl-4',6'-dimethyl-13'-[(4~{S})-4-methyl-2-oxidanylidene-1,3-oxazolidin-3-yl]spiro[1,3-diazinane-5,8'-5,15-dioxa-2,14-diazatetracyclo[8.7.0.0^{2,7}.0^{12,16}]heptadeca-1(17),10,12(16),13-tetraene]-2,4,6-trione" 
_pdbx_chem_comp_synonyms.provenance   PDB 
_pdbx_chem_comp_synonyms.type         ? 
# 
