data_R6U
# 
_chem_comp.id                                    R6U 
_chem_comp.name                                  "(1,3-dimethylimidazol-1-ium-2-yl)-tris(oxidanyl)ruthenium" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C5 H11 N2 O3 Ru" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    1 
_chem_comp.pdbx_initial_date                     2023-01-04 
_chem_comp.pdbx_modified_date                    2024-01-05 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        248.222 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     R6U 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8C3B 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
R6U RU  RU1 RU 0 0 N N N N N N -28.832 29.480 18.686 -0.987 0.012  -0.005 RU  R6U 1  
R6U O1  O1  O  0 1 N N N N N N -30.935 28.958 18.838 -1.594 -0.004 -1.742 O1  R6U 2  
R6U O2  O2  O  0 1 N N N N N N -28.739 29.269 17.468 -1.589 1.531  0.841  O2  R6U 3  
R6U O3  O3  O  0 1 N N N N N N -29.296 31.278 18.272 -1.617 -1.474 0.878  O3  R6U 4  
R6U C33 C1  C  0 1 N N N N N N -25.917 31.641 20.014 1.330  2.456  -0.029 C33 R6U 5  
R6U N4  N1  N  0 1 Y N N N N N -25.928 30.926 18.905 1.783  1.063  -0.009 N4  R6U 6  
R6U C29 C2  C  0 1 Y N N N N N -26.836 30.078 18.440 1.003  -0.006 0.002  C29 R6U 7  
R6U C32 C3  C  0 1 Y N N N N N -24.849 30.976 18.123 3.067  0.649  -0.004 C32 R6U 8  
R6U C31 C4  C  0 1 Y N N N N N -25.079 30.202 17.090 3.055  -0.699 0.015  C31 R6U 9  
R6U N3  N2  N  1 1 Y N N N N N -26.326 29.627 17.232 1.763  -1.089 0.019  N3  R6U 10 
R6U C30 C5  C  0 1 N N N N N N -26.691 28.807 16.230 1.285  -2.474 0.038  C30 R6U 11 
R6U H1  H1  H  0 1 N N N N N N -31.222 29.057 19.738 -1.314 -0.777 -2.250 H1  R6U 12 
R6U H2  H2  H  0 1 N N N N N N -28.494 28.363 17.321 -1.306 1.605  1.763  H2  R6U 13 
R6U H3  H3  H  0 1 N N N N N N -29.448 31.760 19.077 -2.582 -1.530 0.914  H3  R6U 14 
R6U H4  H4  H  0 1 N N N N N N -26.867 31.500 20.551 1.214  2.815  0.994  H4  R6U 15 
R6U H5  H5  H  0 1 N N N N N N -25.083 31.314 20.652 2.066  3.070  -0.547 H5  R6U 16 
R6U H6  H6  H  0 1 N N N N N N -25.792 32.705 19.763 0.374  2.520  -0.547 H6  R6U 17 
R6U H7  H7  H  0 1 N N N N N N -23.952 31.548 18.307 3.943  1.280  -0.014 H7  R6U 18 
R6U H8  H8  H  0 1 N N N N N N -24.403 30.041 16.263 3.919  -1.347 0.026  H8  R6U 19 
R6U H9  H9  H  0 1 N N N N N N -27.693 28.401 16.434 1.164  -2.802 1.070  H9  R6U 20 
R6U H10 H10 H  0 1 N N N N N N -26.709 29.369 15.285 0.326  -2.534 -0.477 H10 R6U 21 
R6U H11 H11 H  0 1 N N N N N N -25.970 27.980 16.152 2.008  -3.115 -0.466 H11 R6U 22 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
R6U C30 N3  SING N N 1  
R6U C31 N3  SING Y N 2  
R6U C31 C32 DOUB Y N 3  
R6U N3  C29 DOUB Y N 4  
R6U O2  RU  SING N N 5  
R6U C32 N4  SING Y N 6  
R6U O3  RU  SING N N 7  
R6U C29 RU  SING N N 8  
R6U C29 N4  SING Y N 9  
R6U RU  O1  SING N N 10 
R6U N4  C33 SING N N 11 
R6U O1  H1  SING N N 12 
R6U O2  H2  SING N N 13 
R6U O3  H3  SING N N 14 
R6U C33 H4  SING N N 15 
R6U C33 H5  SING N N 16 
R6U C33 H6  SING N N 17 
R6U C32 H7  SING N N 18 
R6U C31 H8  SING N N 19 
R6U C30 H9  SING N N 20 
R6U C30 H10 SING N N 21 
R6U C30 H11 SING N N 22 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
R6U InChI            InChI                1.06  "InChI=1S/C5H8N2.3H2O.Ru/c1-6-3-4-7(2)5-6;;;;/h3-4H,1-2H3;3*1H2;/q+1;;;;+3/p-3" 
R6U InChIKey         InChI                1.06  NXUITYSMOYFBJL-UHFFFAOYSA-K                                                     
R6U SMILES_CANONICAL CACTVS               3.385 "Cn1cc[n+](C)c1[Ru](O)(O)O"                                                     
R6U SMILES           CACTVS               3.385 "Cn1cc[n+](C)c1[Ru](O)(O)O"                                                     
R6U SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cn1cc[n+](c1[Ru](O)(O)O)C"                                                     
R6U SMILES           "OpenEye OEToolkits" 2.0.7 "Cn1cc[n+](c1[Ru](O)(O)O)C"                                                     
# 
_pdbx_chem_comp_identifier.comp_id           R6U 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(1,3-dimethylimidazol-1-ium-2-yl)-tris(oxidanyl)ruthenium" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
R6U "Create component" 2023-01-04 PDBE 
R6U "Initial release"  2024-01-10 RCSB 
# 
