data_ODU
# 
_chem_comp.id                                    ODU 
_chem_comp.name                                  "tetranitro-nitroso-oxidanyl-ruthenium(2-)" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAI 
_chem_comp.formula                               "H N5 O10 Ru" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         hydroxy-tetranitro-nitrosyl-ruthenate 
_chem_comp.pdbx_formal_charge                    -2 
_chem_comp.pdbx_initial_date                     2022-09-05 
_chem_comp.pdbx_modified_date                    2023-02-24 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        332.105 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ODU 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8AX1 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
ODU N12 N1  N  0  1 N N N -25.191 -18.879 31.155 0.268  0.220  -1.889 N12 ODU 1  
ODU N03 N2  N  1  1 N N N -26.590 -18.031 32.977 -0.923 1.856  0.162  N03 ODU 2  
ODU N06 N3  N  1  1 N N N -23.936 -19.773 33.543 1.750  0.835  0.505  N06 ODU 3  
ODU N09 N4  N  1  1 N N N -27.494 -20.507 31.681 -1.889 -0.822 -0.286 N09 ODU 4  
ODU N14 N5  N  1  1 N N N -24.904 -21.463 31.483 0.785  -1.843 0.056  N14 ODU 5  
ODU O01 O1  O  0  1 N N N -26.332 -20.629 34.122 -0.374 -0.186 1.914  O01 ODU 6  
ODU O04 O2  O  0  1 N N N -26.927 -17.145 32.328 -0.389 2.790  -0.408 O04 ODU 7  
ODU O05 O3  O  -1 1 N N N -26.668 -17.908 34.141 -1.968 2.028  0.765  O05 ODU 8  
ODU O07 O4  O  -1 1 N N N -22.940 -19.651 32.931 2.105  1.838  -0.089 O07 ODU 9  
ODU O08 O5  O  0  1 N N N -24.035 -19.717 34.727 2.483  0.328  1.335  O08 ODU 10 
ODU O10 O6  O  0  1 N N N -28.067 -21.384 32.137 -2.621 -0.315 -1.116 O10 ODU 11 
ODU O11 O7  O  -1 1 N N N -27.936 -19.830 30.813 -2.243 -1.825 0.308  O11 ODU 12 
ODU O13 O8  O  0  1 N N N -25.075 -18.361 30.243 1.347  -0.090 -2.361 O13 ODU 13 
ODU O15 O9  O  0  1 N N N -24.361 -21.582 30.497 0.251  -2.777 0.627  O15 ODU 14 
ODU O16 O10 O  -1 1 N N N -24.960 -22.433 32.127 1.829  -2.014 -0.546 O16 ODU 15 
ODU RU1 RU1 RU -2 0 N N N -25.705 -19.822 32.448 -0.069 0.007  0.109  RU1 ODU 16 
ODU H1  H1  H  0  1 N N N -25.671 -20.518 34.795 0.380  -0.540 2.405  H1  ODU 17 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
ODU O13 N12 DOUB N N 1  
ODU O15 N14 DOUB N N 2  
ODU O11 N09 SING N N 3  
ODU N12 RU1 SING N N 4  
ODU N14 O16 SING N N 5  
ODU N14 RU1 SING N N 6  
ODU N09 O10 DOUB N N 7  
ODU N09 RU1 SING N N 8  
ODU O04 N03 DOUB N N 9  
ODU RU1 N03 SING N N 10 
ODU RU1 N06 SING N N 11 
ODU RU1 O01 SING N N 12 
ODU O07 N06 SING N N 13 
ODU N03 O05 SING N N 14 
ODU N06 O08 DOUB N N 15 
ODU O01 H1  SING N N 16 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
ODU InChI            InChI                1.06    InChI=1S/4NO2.NO.H2O.Ru/c4*2-1-3;1-2;;/h;;;;;1H2;/q;;;;-1;;/p-1        
ODU InChIKey         InChI                1.06    YJGPUQROXYARAA-UHFFFAOYSA-M                                            
ODU SMILES_CANONICAL CACTVS               3.385   "O[Ru--](N=O)([N+]([O-])=O)([N+]([O-])=O)([N+]([O-])=O)[N+]([O-])=O"   
ODU SMILES           CACTVS               3.385   "O[Ru--](N=O)([N+]([O-])=O)([N+]([O-])=O)([N+]([O-])=O)[N+]([O-])=O"   
ODU SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "N(=O)[Ru-2]([N+](=O)[O-])([N+](=O)[O-])([N+](=O)[O-])([N+](=O)[O-])O" 
ODU SMILES           "OpenEye OEToolkits" 3.1.0.0 "N(=O)[Ru-2]([N+](=O)[O-])([N+](=O)[O-])([N+](=O)[O-])([N+](=O)[O-])O" 
# 
_pdbx_chem_comp_identifier.comp_id           ODU 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   3.1.0.0 
_pdbx_chem_comp_identifier.identifier        "tetranitro-nitroso-oxidanyl-ruthenium(2-)" 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      ODU 
_pdbx_chem_comp_synonyms.name         hydroxy-tetranitro-nitrosyl-ruthenate 
_pdbx_chem_comp_synonyms.provenance   AUTHOR 
_pdbx_chem_comp_synonyms.type         ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
ODU "Create component" 2022-09-05 PDBE 
ODU "Initial release"  2023-03-01 RCSB 
# 
