data_N4U
# 
_chem_comp.id                                    N4U 
_chem_comp.name                                  "~{N}-(2-methylpyrimidin-5-yl)propanamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C8 H11 N3 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-08-12 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        165.192 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     N4U 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8AOF 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
N4U C1  C1  C 0 1 N N N N N N 12.969 9.966  44.205 4.246  0.678  -0.142 C1  N4U 1  
N4U C2  C2  C 0 1 Y N N N N N 11.608 9.657  43.682 2.810  0.234  -0.031 C2  N4U 2  
N4U C5  C3  C 0 1 Y N N N N N 9.176  9.112  42.746 0.260  -0.554 0.168  C5  N4U 3  
N4U C7  C4  C 0 1 N N N N N N 6.997  8.016  42.851 -2.069 -0.106 -0.018 C7  N4U 4  
N4U C10 C5  C 0 1 N N N N N N 4.936  6.634  42.332 -4.428 0.639  -0.200 C10 N4U 5  
N4U C11 C6  C 0 1 Y N N N N N 9.688  10.400 42.696 1.260  -1.454 -0.192 C11 N4U 6  
N4U C9  C7  C 0 1 N N N N N N 5.628  7.963  42.200 -3.504 -0.511 0.207  C9  N4U 7  
N4U O8  O1  O 0 1 N N N N N N 7.275  7.368  43.863 -1.812 0.993  -0.461 O8  N4U 8  
N4U N6  N1  N 0 1 N N N N N N 7.881  8.829  42.246 -1.073 -0.966 0.273  N6  N4U 9  
N4U N12 N2  N 0 1 Y N N N N N 10.904 10.681 43.163 2.507  -1.023 -0.284 N12 N4U 10 
N4U N3  N3  N 0 1 Y N N N N N 11.190 8.380  43.771 1.894  1.114  0.322  N3  N4U 11 
N4U C4  C8  C 0 1 Y N N N N N 9.970  8.117  43.299 0.623  0.764  0.432  C4  N4U 12 
N4U H14 H1  H 0 1 N N N N N N 13.179 11.037 44.071 4.743  0.545  0.818  H14 N4U 13 
N4U H15 H2  H 0 1 N N N N N N 13.017 9.714  45.275 4.753  0.080  -0.900 H15 N4U 14 
N4U H13 H3  H 0 1 N N N N N N 13.716 9.374  43.655 4.280  1.730  -0.427 H13 N4U 15 
N4U H19 H4  H 0 1 N N N N N N 3.955  6.680  41.836 -4.199 1.519  0.401  H19 N4U 16 
N4U H20 H5  H 0 1 N N N N N N 5.550  5.853  41.860 -4.277 0.870  -1.255 H20 N4U 17 
N4U H1  H6  H 0 1 N N N N N N 4.797  6.397  43.397 -5.465 0.347  -0.037 H1  N4U 18 
N4U H21 H7  H 0 1 N N N N N N 9.089  11.191 42.270 1.019  -2.484 -0.405 H21 N4U 19 
N4U H18 H8  H 0 1 N N N N N N 5.746  8.186  41.129 -3.732 -1.391 -0.394 H18 N4U 20 
N4U H22 H9  H 0 1 N N N N N N 4.994  8.731  42.667 -3.655 -0.742 1.262  H22 N4U 21 
N4U H17 H10 H 0 1 N N N N N N 7.606  9.262  41.387 -1.281 -1.871 0.554  H17 N4U 22 
N4U H16 H11 H 0 1 N N N N N N 9.592  7.107  43.348 -0.123 1.492  0.715  H16 N4U 23 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
N4U C9  C10 SING N N 1  
N4U C9  C7  SING N N 2  
N4U N6  C5  SING N N 3  
N4U N6  C7  SING N N 4  
N4U C11 C5  DOUB Y N 5  
N4U C11 N12 SING Y N 6  
N4U C5  C4  SING Y N 7  
N4U C7  O8  DOUB N N 8  
N4U N12 C2  DOUB Y N 9  
N4U C4  N3  DOUB Y N 10 
N4U C2  N3  SING Y N 11 
N4U C2  C1  SING N N 12 
N4U C1  H14 SING N N 13 
N4U C1  H15 SING N N 14 
N4U C1  H13 SING N N 15 
N4U C10 H19 SING N N 16 
N4U C10 H20 SING N N 17 
N4U C10 H1  SING N N 18 
N4U C11 H21 SING N N 19 
N4U C9  H18 SING N N 20 
N4U C9  H22 SING N N 21 
N4U N6  H17 SING N N 22 
N4U C4  H16 SING N N 23 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
N4U InChI            InChI                1.06  "InChI=1S/C8H11N3O/c1-3-8(12)11-7-4-9-6(2)10-5-7/h4-5H,3H2,1-2H3,(H,11,12)" 
N4U InChIKey         InChI                1.06  FGDIXUKKWMCJCI-UHFFFAOYSA-N                                                 
N4U SMILES_CANONICAL CACTVS               3.385 "CCC(=O)Nc1cnc(C)nc1"                                                       
N4U SMILES           CACTVS               3.385 "CCC(=O)Nc1cnc(C)nc1"                                                       
N4U SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC(=O)Nc1cnc(nc1)C"                                                       
N4U SMILES           "OpenEye OEToolkits" 2.0.7 "CCC(=O)Nc1cnc(nc1)C"                                                       
# 
_pdbx_chem_comp_identifier.comp_id           N4U 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "~{N}-(2-methylpyrimidin-5-yl)propanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
N4U "Create component"  2022-08-12 PDBE 
N4U "Initial release"   2022-09-28 RCSB 
N4U "Modify descriptor" 2023-09-23 RCSB 
N4U "Modify PCM"        2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            N4U 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C10 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
