data_LHU
# 
_chem_comp.id                                    LHU 
_chem_comp.name                                  "L-URIDINE-5'-MONOPHOSPHATE" 
_chem_comp.type                                  "RNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C9 H13 N2 O9 P" 
_chem_comp.mon_nstd_parent_comp_id               U 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2003-10-16 
_chem_comp.pdbx_modified_date                    2009-07-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   OBS 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        324.181 
_chem_comp.one_letter_code                       U 
_chem_comp.three_letter_code                     LHU 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1R3O 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
LHU OP3    O3P  O 0 1 N Y N ?      ?      ?       2.808  2.058  4.423  OP3    LHU 1  
LHU P      P    P 0 1 N N N -4.674 6.848  102.070 1.820  3.153  3.760  P      LHU 2  
LHU OP1    O1P  O 0 1 N N N -4.085 5.880  101.100 1.994  4.558  4.258  OP1    LHU 3  
LHU OP2    O2P  O 0 1 N N N -5.858 7.684  101.727 0.351  2.521  3.997  OP2    LHU 4  
LHU "O5'"  O5*  O 0 1 N N N -3.511 7.756  102.545 2.045  2.960  2.168  "O5'"  LHU 5  
LHU "C5'"  C5*  C 0 1 N N N -2.268 7.168  102.852 1.900  1.662  1.618  "C5'"  LHU 6  
LHU "C4'"  C4*  C 0 1 N N S -1.367 8.232  103.410 2.159  1.737  0.119  "C4'"  LHU 7  
LHU "O4'"  O4*  O 0 1 N N N -1.897 8.778  104.650 1.145  2.580  -0.471 "O4'"  LHU 8  
LHU "C3'"  C3*  C 0 1 N N R -1.171 9.452  102.500 2.040  0.389  -0.580 "C3'"  LHU 9  
LHU "O3'"  O3*  O 0 1 N N N -0.152 9.207  101.515 2.794  0.454  -1.790 "O3'"  LHU 10 
LHU "C2'"  C2*  C 0 1 N N S -0.673 10.463 103.515 0.559  0.321  -0.888 "C2'"  LHU 11 
LHU "O2'"  O2*  O 0 1 N N N 0.687  10.242 103.786 0.255  -0.558 -1.952 "O2'"  LHU 12 
LHU "C1'"  C1*  C 0 1 N N S -1.554 10.162 104.739 0.243  1.765  -1.238 "C1'"  LHU 13 
LHU N1     N1   N 0 1 N N N -2.789 11.035 104.772 -1.107 2.131  -0.915 N1     LHU 14 
LHU C2     C2   C 0 1 N N N -2.726 12.317 105.288 -2.139 2.059  -1.880 C2     LHU 15 
LHU O2     O2   O 0 1 N N N -1.708 12.786 105.768 -1.965 1.686  -3.042 O2     LHU 16 
LHU N3     N3   N 0 1 N N N -3.916 13.016 105.254 -3.406 2.448  -1.426 N3     LHU 17 
LHU C4     C4   C 0 1 N N N -5.124 12.583 104.737 -3.734 2.885  -0.152 C4     LHU 18 
LHU O4     O4   O 0 1 N N N -6.125 13.306 104.753 -4.862 3.216  0.201  O4     LHU 19 
LHU C5     C5   C 0 1 N N N -5.111 11.252 104.196 -2.600 2.931  0.794  C5     LHU 20 
LHU C6     C6   C 0 1 N N N -3.971 10.556 104.236 -1.387 2.564  0.376  C6     LHU 21 
LHU HOP3   3HOP H 0 0 N N N -0.375 0.616  0.617   2.898  2.030  5.400  HOP3   LHU 22 
LHU HOP2   2HOP H 0 0 N N N -5.901 7.747  102.673 -0.063 2.600  4.883  HOP2   LHU 23 
LHU "H5'"  1H5* H 0 1 N N N -2.365 6.288  103.530 2.619  0.990  2.089  "H5'"  LHU 24 
LHU "H5''" 2H5* H 0 0 N N N -1.817 6.637  101.980 0.887  1.304  1.806  "H5''" LHU 25 
LHU "H4'"  H4*  H 0 1 N N N -0.397 7.696  103.540 3.129  2.211  -0.058 "H4'"  LHU 26 
LHU "H3'"  H3*  H 0 1 N N N -2.078 9.750  101.924 2.412  -0.458 0.002  "H3'"  LHU 27 
LHU "HO3'" H3T  H 0 0 N Y N -0.030 9.962  100.951 3.298  -0.373 -1.843 "HO3'" LHU 28 
LHU "H2'"  H2*  H 0 1 N N N -0.743 11.524 103.182 0.004  -0.000 0.002  "H2'"  LHU 29 
LHU "HO2'" 2HO* H 0 0 N N N 0.998  10.875 104.421 1.097  -0.924 -2.273 "HO2'" LHU 30 
LHU "H1'"  H1*  H 0 1 N N N -1.007 10.383 105.685 0.391  1.980  -2.302 "H1'"  LHU 31 
LHU H3     H3   H 0 1 N N N -3.901 13.954 105.654 -4.165 2.404  -2.101 H3     LHU 32 
LHU H5     H5   H 0 1 N N N -5.987 10.758 103.744 -2.781 3.263  1.809  H5     LHU 33 
LHU H6     H6   H 0 1 N N N -4.007 9.540  103.807 -0.541 2.590  1.054  H6     LHU 34 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
LHU OP3   P      SING N N 1  
LHU OP3   HOP3   SING N N 2  
LHU P     OP1    DOUB N N 3  
LHU P     OP2    SING N N 4  
LHU P     "O5'"  SING N N 5  
LHU OP2   HOP2   SING N N 6  
LHU "O5'" "C5'"  SING N N 7  
LHU "C5'" "C4'"  SING N N 8  
LHU "C5'" "H5'"  SING N N 9  
LHU "C5'" "H5''" SING N N 10 
LHU "C4'" "O4'"  SING N N 11 
LHU "C4'" "C3'"  SING N N 12 
LHU "C4'" "H4'"  SING N N 13 
LHU "O4'" "C1'"  SING N N 14 
LHU "C3'" "O3'"  SING N N 15 
LHU "C3'" "C2'"  SING N N 16 
LHU "C3'" "H3'"  SING N N 17 
LHU "O3'" "HO3'" SING N N 18 
LHU "C2'" "O2'"  SING N N 19 
LHU "C2'" "C1'"  SING N N 20 
LHU "C2'" "H2'"  SING N N 21 
LHU "O2'" "HO2'" SING N N 22 
LHU "C1'" N1     SING N N 23 
LHU "C1'" "H1'"  SING N N 24 
LHU N1    C2     SING N N 25 
LHU N1    C6     SING N N 26 
LHU C2    O2     DOUB N N 27 
LHU C2    N3     SING N N 28 
LHU N3    C4     SING N N 29 
LHU N3    H3     SING N N 30 
LHU C4    O4     DOUB N N 31 
LHU C4    C5     SING N N 32 
LHU C5    C6     DOUB N N 33 
LHU C5    H5     SING N N 34 
LHU C6    H6     SING N N 35 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
LHU SMILES           ACDLabs              10.04 "O=C1NC(=O)N(C=C1)C2OC(C(O)C2O)COP(=O)(O)O"                                                                                                                     
LHU InChI            InChI                1.02b "InChI=1/C9H13N2O9P/c12-5-1-2-11(9(15)10-5)8-7(14)6(13)4(20-8)3-19-21(16,17)18/h1-2,4,6-8,13-14H,3H2,(H,10,12,15)(H2,16,17,18)/t4-,6-,7-,8-/m0/s1/f/h10,16-17H" 
LHU InChIKey         InChI                1.02b DJJCXFVJDGTHFX-BNODKPKQDS                                                                                                                                       
LHU SMILES_CANONICAL CACTVS               3.341 "O[C@@H]1[C@H](O)[C@H](O[C@H]1CO[P](O)(O)=O)N2C=CC(=O)NC2=O"                                                                                                    
LHU SMILES           CACTVS               3.341 "O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(O)=O)N2C=CC(=O)NC2=O"                                                                                                         
LHU SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1=CN(C(=O)NC1=O)[C@@H]2[C@H]([C@H]([C@@H](O2)COP(=O)(O)O)O)O"                                                                                                 
LHU SMILES           "OpenEye OEToolkits" 1.5.0 "C1=CN(C(=O)NC1=O)C2C(C(C(O2)COP(=O)(O)O)O)O"                                                                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
LHU "SYSTEMATIC NAME" ACDLabs              10.04 "1-(5-O-phosphono-beta-L-ribofuranosyl)pyrimidine-2,4(1H,3H)-dione"                                
LHU "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2S,3R,4S,5S)-5-(2,4-dioxopyrimidin-1-yl)-3,4-dihydroxy-oxolan-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
LHU "Create component" 2003-10-16 RCSB 
# 
