data_L7U
# 
_chem_comp.id                                    L7U 
_chem_comp.name                                  "~{N}-[2-[2-(dimethylamino)ethyldisulfanyl]ethyl]-1-[(2~{R})-2-(6-methoxynaphthalen-2-yl)propanoyl]piperidine-4-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C26 H37 N3 O3 S2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-06-20 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        503.720 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     L7U 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8A68 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
L7U C1  C1  C 0 1 N N N N N N -28.833 16.533 -1.405 9.518   -4.365 -1.374 C1  L7U 1  
L7U C10 C2  C 0 1 N N N N N N -22.551 22.925 0.792  2.919   2.189  0.484  C10 L7U 2  
L7U C11 C3  C 0 1 N N N N N N -23.755 24.430 -0.755 0.683   2.211  1.482  C11 L7U 3  
L7U C12 C4  C 0 1 N N N N N N -23.979 24.066 -2.198 -0.575  1.748  0.740  C12 L7U 4  
L7U C13 C5  C 0 1 N N N N N N -22.803 24.570 -3.033 -1.079  2.882  -0.156 C13 L7U 5  
L7U C14 C6  C 0 1 N N N N N N -22.905 24.204 -4.504 -2.336  2.442  -0.862 C14 L7U 6  
L7U C15 C7  C 0 1 N N N N N N -22.887 25.166 -6.836 -4.642  1.656  -0.833 C15 L7U 7  
L7U C16 C8  C 0 1 N N N N N N -21.803 24.273 -7.396 -5.713  1.306  0.202  C16 L7U 8  
L7U C17 C9  C 0 1 N N N N N N -21.493 23.995 -2.471 -0.008  3.231  -1.191 C17 L7U 9  
L7U C18 C10 C 0 1 N N N N N N -21.337 24.203 -0.976 1.256   3.711  -0.471 C18 L7U 10 
L7U C19 C11 C 0 1 Y N N N N N -24.273 20.361 1.133  5.740   1.267  0.928  C19 L7U 11 
L7U C2  C12 C 0 1 Y N N N N N -28.472 18.769 -0.642 8.331   -2.451 -0.612 C2  L7U 12 
L7U C20 C13 C 0 1 Y N N N N N -25.052 19.327 0.707  6.944   0.766  0.538  C20 L7U 13 
L7U C21 C14 C 0 1 Y N N N N N -26.370 19.557 0.249  7.045   -0.584 0.158  C21 L7U 14 
L7U C22 C15 C 0 1 Y N N N N N -27.200 18.503 -0.207 8.270   -1.135 -0.250 C22 L7U 15 
L7U C3  C16 C 0 1 Y N N N N N -28.969 20.091 -0.646 7.189   -3.257 -0.582 C3  L7U 16 
L7U C4  C17 C 0 1 Y N N N N N -28.183 21.116 -0.224 5.988   -2.753 -0.192 C4  L7U 17 
L7U C5  C18 C 0 1 Y N N N N N -26.863 20.888 0.231  5.888   -1.403 0.188  C5  L7U 18 
L7U C6  C19 C 0 1 Y N N N N N -26.020 21.934 0.676  4.663   -0.849 0.596  C6  L7U 19 
L7U C7  C20 C 0 1 Y N N N N N -24.741 21.697 1.107  4.604   0.461  0.962  C7  L7U 20 
L7U C8  C21 C 0 1 N N R N N N -23.846 22.828 1.591  3.288   1.050  1.400  C8  L7U 21 
L7U C9  C22 C 0 1 N N N N N N -23.563 22.691 3.090  3.413   1.569  2.834  C9  L7U 22 
L7U N1  N1  N 0 1 N N N N N N -22.539 23.781 -0.254 1.666   2.685  0.498  N1  L7U 23 
L7U N2  N2  N 0 1 N N N N N N -22.850 25.215 -5.377 -3.420  2.083  -0.147 N2  L7U 24 
L7U O1  O1  O 0 1 N N N N N N -29.353 17.822 -1.092 9.517   -2.984 -1.007 O1  L7U 25 
L7U O2  O2  O 0 1 N N N N N N -21.564 22.270 1.114  3.749   2.659  -0.265 O2  L7U 26 
L7U O3  O3  O 0 1 N N N N N N -22.993 23.030 -4.878 -2.371  2.411  -2.074 O3  L7U 27 
L7U S1  S1  S 0 1 N N N N N N -20.183 24.589 -6.649 -7.226  0.777  -0.647 S1  L7U 28 
L7U H3  H1  H 0 1 N N N N N N -29.649 15.882 -1.751 8.835   -4.519 -2.209 H3  L7U 29 
L7U H2  H2  H 0 1 N N N N N N -28.077 16.626 -2.198 10.525  -4.662 -1.668 H2  L7U 30 
L7U H1  H3  H 0 1 N N N N N N -28.371 16.096 -0.507 9.195   -4.967 -0.524 H1  L7U 31 
L7U H11 H4  H 0 1 N N N N N N -23.647 25.521 -0.668 0.428   3.022  2.164  H11 L7U 32 
L7U H12 H5  H 0 1 N N N N N N -24.617 24.098 -0.158 1.104   1.379  2.047  H12 L7U 33 
L7U H13 H6  H 0 1 N N N N N N -24.909 24.532 -2.555 -0.336  0.879  0.127  H13 L7U 34 
L7U H14 H7  H 0 1 N N N N N N -24.056 22.973 -2.294 -1.347  1.484  1.462  H14 L7U 35 
L7U H15 H8  H 0 1 N N N N N N -22.762 25.666 -2.949 -1.294  3.759  0.455  H15 L7U 36 
L7U H18 H9  H 0 1 N N N N N N -22.749 26.184 -7.230 -4.428  0.779  -1.444 H18 L7U 37 
L7U H17 H10 H 0 1 N N N N N N -23.866 24.780 -7.154 -5.002  2.464  -1.470 H17 L7U 38 
L7U H20 H11 H 0 1 N N N N N N -22.079 23.225 -7.209 -5.353  0.499  0.840  H20 L7U 39 
L7U H19 H12 H 0 1 N N N N N N -21.730 24.445 -8.480 -5.927  2.183  0.813  H19 L7U 40 
L7U H22 H13 H 0 1 N N N N N N -21.469 22.915 -2.677 0.225   2.348  -1.786 H22 L7U 41 
L7U H23 H14 H 0 1 N N N N N N -20.650 24.484 -2.981 -0.377  4.023  -1.844 H23 L7U 42 
L7U H24 H15 H 0 1 N N N N N N -20.479 23.614 -0.619 2.054   3.866  -1.197 H24 L7U 43 
L7U H25 H16 H 0 1 N N N N N N -21.156 25.270 -0.779 1.047   4.644  0.051  H25 L7U 44 
L7U H26 H17 H 0 1 N N N N N N -23.277 20.157 1.498  5.665   2.304  1.219  H26 L7U 45 
L7U H27 H18 H 0 1 N N N N N N -24.659 18.321 0.719  7.816   1.402  0.520  H27 L7U 46 
L7U H28 H19 H 0 1 N N N N N N -26.830 17.489 -0.212 9.159   -0.523 -0.277 H28 L7U 47 
L7U H4  H20 H 0 1 N N N N N N -29.975 20.288 -0.985 7.261   -4.294 -0.874 H4  L7U 48 
L7U H5  H21 H 0 1 N N N N N N -28.573 22.123 -0.236 5.113   -3.387 -0.174 H5  L7U 49 
L7U H6  H22 H 0 1 N N N N N N -26.395 22.947 0.676  3.773   -1.461 0.624  H6  L7U 50 
L7U H7  H23 H 0 1 N N N N N N -24.395 23.770 1.445  2.514   0.284  1.357  H7  L7U 51 
L7U H9  H24 H 0 1 N N N N N N -24.514 22.623 3.639  4.099   2.415  2.855  H9  L7U 52 
L7U H8  H25 H 0 1 N N N N N N -22.971 21.782 3.270  2.434   1.885  3.193  H8  L7U 53 
L7U H10 H26 H 0 1 N N N N N N -23.000 23.570 3.439  3.796   0.775  3.475  H10 L7U 54 
L7U H16 H27 H 0 1 N N N N N N -22.773 26.128 -4.977 -3.392  2.108  0.823  H16 L7U 55 
L7U S2  S2  S 0 1 N Y N N N N ?       ?      ?      -6.698  -1.039 -1.439 S2  L7U 56 
L7U C24 C24 C 0 1 N Y N N N N ?       ?      ?      -6.998  -2.185 -0.067 C24 L7U 57 
L7U C25 C25 C 0 1 N Y N N N N ?       ?      ?      -8.505  -2.313 0.171  C25 L7U 58 
L7U N3  N3  N 0 1 N Y N N N N ?       ?      ?      -8.748  -3.242 1.283  N3  L7U 59 
L7U C27 C27 C 0 1 N Y N N N N ?       ?      ?      -10.157 -3.211 1.696  C27 L7U 60 
L7U C28 C28 C 0 1 N Y N N N N ?       ?      ?      -8.333  -4.606 0.930  C28 L7U 61 
L7U H21 H28 H 0 1 N Y N N N N ?       ?      ?      -6.585  -3.164 -0.313 H21 L7U 62 
L7U H29 H29 H 0 1 N Y N N N N ?       ?      ?      -6.519  -1.806 0.836  H29 L7U 63 
L7U H30 H30 H 0 1 N Y N N N N ?       ?      ?      -8.918  -1.335 0.418  H30 L7U 64 
L7U H31 H31 H 0 1 N Y N N N N ?       ?      ?      -8.984  -2.693 -0.731 H31 L7U 65 
L7U H32 H32 H 0 1 N Y N N N N ?       ?      ?      -10.788 -3.499 0.856  H32 L7U 66 
L7U H33 H33 H 0 1 N Y N N N N ?       ?      ?      -10.309 -3.908 2.521  H33 L7U 67 
L7U H34 H34 H 0 1 N Y N N N N ?       ?      ?      -10.419 -2.203 2.019  H34 L7U 68 
L7U H35 H35 H 0 1 N Y N N N N ?       ?      ?      -7.268  -4.613 0.695  H35 L7U 69 
L7U H36 H36 H 0 1 N Y N N N N ?       ?      ?      -8.524  -5.273 1.771  H36 L7U 70 
L7U H37 H37 H 0 1 N Y N N N N ?       ?      ?      -8.898  -4.945 0.062  H37 L7U 71 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
L7U C16 C15 SING N N 1  
L7U C16 S1  SING N N 2  
L7U C15 N2  SING N N 3  
L7U N2  C14 SING N N 4  
L7U O3  C14 DOUB N N 5  
L7U C14 C13 SING N N 6  
L7U C13 C17 SING N N 7  
L7U C13 C12 SING N N 8  
L7U C17 C18 SING N N 9  
L7U C12 C11 SING N N 10 
L7U C1  O1  SING N N 11 
L7U O1  C2  SING N N 12 
L7U C18 N1  SING N N 13 
L7U C11 N1  SING N N 14 
L7U C3  C2  DOUB Y N 15 
L7U C3  C4  SING Y N 16 
L7U C2  C22 SING Y N 17 
L7U N1  C10 SING N N 18 
L7U C4  C5  DOUB Y N 19 
L7U C22 C21 DOUB Y N 20 
L7U C5  C21 SING Y N 21 
L7U C5  C6  SING Y N 22 
L7U C21 C20 SING Y N 23 
L7U C6  C7  DOUB Y N 24 
L7U C20 C19 DOUB Y N 25 
L7U C10 O2  DOUB N N 26 
L7U C10 C8  SING N N 27 
L7U C7  C19 SING Y N 28 
L7U C7  C8  SING N N 29 
L7U C8  C9  SING N N 30 
L7U C1  H3  SING N N 31 
L7U C1  H2  SING N N 32 
L7U C1  H1  SING N N 33 
L7U C11 H11 SING N N 34 
L7U C11 H12 SING N N 35 
L7U C12 H13 SING N N 36 
L7U C12 H14 SING N N 37 
L7U C13 H15 SING N N 38 
L7U C15 H18 SING N N 39 
L7U C15 H17 SING N N 40 
L7U C16 H20 SING N N 41 
L7U C16 H19 SING N N 42 
L7U C17 H22 SING N N 43 
L7U C17 H23 SING N N 44 
L7U C18 H24 SING N N 45 
L7U C18 H25 SING N N 46 
L7U C19 H26 SING N N 47 
L7U C20 H27 SING N N 48 
L7U C22 H28 SING N N 49 
L7U C3  H4  SING N N 50 
L7U C4  H5  SING N N 51 
L7U C6  H6  SING N N 52 
L7U C8  H7  SING N N 53 
L7U C9  H9  SING N N 54 
L7U C9  H8  SING N N 55 
L7U C9  H10 SING N N 56 
L7U N2  H16 SING N N 57 
L7U S1  S2  SING N N 58 
L7U S2  C24 SING N N 59 
L7U C24 C25 SING N N 60 
L7U C25 N3  SING N N 61 
L7U N3  C27 SING N N 62 
L7U N3  C28 SING N N 63 
L7U C24 H21 SING N N 64 
L7U C24 H29 SING N N 65 
L7U C25 H30 SING N N 66 
L7U C25 H31 SING N N 67 
L7U C27 H32 SING N N 68 
L7U C27 H33 SING N N 69 
L7U C27 H34 SING N N 70 
L7U C28 H35 SING N N 71 
L7U C28 H36 SING N N 72 
L7U C28 H37 SING N N 73 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
L7U InChI            InChI                1.06    "InChI=1S/C26H37N3O3S2/c1-19(21-5-6-23-18-24(32-4)8-7-22(23)17-21)26(31)29-12-9-20(10-13-29)25(30)27-11-15-33-34-16-14-28(2)3/h5-8,17-20H,9-16H2,1-4H3,(H,27,30)/t19-/m1/s1" 
L7U InChIKey         InChI                1.06    DZVLAKKQKOIIMO-LJQANCHMSA-N                                                                                                                                                  
L7U SMILES_CANONICAL CACTVS               3.385   "COc1ccc2cc(ccc2c1)[C@@H](C)C(=O)N3CCC(CC3)C(=O)NCCSSCCN(C)C"                                                                                                                
L7U SMILES           CACTVS               3.385   "COc1ccc2cc(ccc2c1)[CH](C)C(=O)N3CCC(CC3)C(=O)NCCSSCCN(C)C"                                                                                                                  
L7U SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "C[C@H](c1ccc2cc(ccc2c1)OC)C(=O)N3CCC(CC3)C(=O)NCCSSCCN(C)C"                                                                                                                 
L7U SMILES           "OpenEye OEToolkits" 3.1.0.0 "CC(c1ccc2cc(ccc2c1)OC)C(=O)N3CCC(CC3)C(=O)NCCSSCCN(C)C"                                                                                                                     
# 
_pdbx_chem_comp_identifier.comp_id           L7U 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   3.1.0.0 
_pdbx_chem_comp_identifier.identifier        "~{N}-[2-[2-(dimethylamino)ethyldisulfanyl]ethyl]-1-[(2~{R})-2-(6-methoxynaphthalen-2-yl)propanoyl]piperidine-4-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
L7U "Create component"  2022-06-20 PDBE 
L7U "Modify descriptor" 2022-08-22 RCSB 
L7U "Initial release"   2023-04-26 RCSB 
L7U "Modify PCM"        2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            L7U 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               S1 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
