data_L3U
#

_chem_comp.id                                   L3U
_chem_comp.name                                 "[(2~{R},3~{S},4~{R},5~{R})-5-[3-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl ~{N}-[(2~{S})-2-azanyl-4-methyl-pentanoyl]sulfamate"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C16 H26 N4 O9 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2018-12-17
_chem_comp.pdbx_modified_date                   2019-04-12
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       450.464
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    L3U
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6Q8B
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
L3U  N      N1   N  0  1  N  N  N   -0.503  -3.162  -28.591  -2.692   2.607  -0.665  N      L3U   1  
L3U  CA     C1   C  0  1  N  N  S   -1.596  -2.170  -28.509  -3.348   1.513   0.063  CA     L3U   2  
L3U  C      C2   C  0  1  N  N  N   -2.809  -2.880  -27.879  -2.981   0.196  -0.572  C      L3U   3  
L3U  O      O1   O  0  1  N  N  N   -3.854  -2.331  -27.535  -2.566   0.167  -1.711  O      L3U   4  
L3U  CB     C3   C  0  1  N  N  N   -1.925  -1.594  -29.886  -4.865   1.701   0.008  CB     L3U   5  
L3U  CG     C4   C  0  1  N  N  N   -0.885  -0.600  -30.396  -5.245   2.998   0.724  CG     L3U   6  
L3U  CD1    C5   C  0  1  N  N  N   -0.859   0.614  -29.481  -6.741   3.261   0.544  CD1    L3U   7  
L3U  CD2    C6   C  0  1  N  N  N   -1.202  -0.195  -31.825  -4.925   2.870   2.215  CD2    L3U   8  
L3U  "C1'"  C7   C  0  1  N  N  R   -8.282  -5.371  -29.460   2.776  -0.935  -0.065  "C1'"  L3U   9  
L3U  C2     C8   C  0  1  N  N  N  -10.457  -6.113  -28.697   4.159   0.991  -0.603  C2     L3U  10  
L3U  "C2'"  C9   C  0  1  N  N  R   -7.722  -4.015  -29.064   2.829  -1.552   1.356  "C2'"  L3U  11  
L3U  "C3'"  C10  C  0  1  N  N  S   -6.547  -3.901  -30.045   1.933  -2.804   1.199  "C3'"  L3U  12  
L3U  C3U    C11  C  0  1  N  N  N  -12.689  -6.676  -27.907   5.649   2.813  -1.221  C3U    L3U  13  
L3U  C4     C12  C  0  1  N  N  N  -10.768  -6.941  -26.392   3.606   3.162   0.058  C4     L3U  14  
L3U  "C4'"  C13  C  0  1  N  N  R   -6.075  -5.352  -30.193   1.066  -2.496  -0.038  "C4'"  L3U  15  
L3U  C5     C14  C  0  1  N  N  N   -9.352  -6.818  -26.213   2.437   2.663   0.682  C5     L3U  16  
L3U  "C5'"  C15  C  0  1  N  N  N   -4.790  -5.675  -29.469  -0.416  -2.540   0.341  "C5'"  L3U  17  
L3U  C6     C16  C  0  1  N  N  N   -8.579  -6.344  -27.202   2.182   1.338   0.634  C6     L3U  18  
L3U  N1     N2   N  0  1  N  N  N   -9.113  -5.984  -28.412   3.053   0.503  -0.013  N1     L3U  19  
L3U  N3     N3   N  0  1  N  N  N  -11.248  -6.578  -27.655   4.438   2.307  -0.571  N3     L3U  20  
L3U  N3S    N4   N  0  1  N  N  N   -2.664  -4.280  -27.647  -3.115  -0.949   0.126  N3S    L3U  21  
L3U  O1S    O2   O  0  1  N  N  N   -4.404  -4.834  -25.904  -2.929  -3.393   0.417  O1S    L3U  22  
L3U  O2     O3   O  0  1  N  N  N  -10.929  -5.889  -29.797   4.921   0.231  -1.169  O2     L3U  23  
L3U  "O2'"  O4   O  0  1  N  N  N   -8.744  -3.045  -29.234   4.166  -1.921   1.702  "O2'"  L3U  24  
L3U  O2S    O5   O  0  1  N  N  N   -3.093  -6.535  -27.136  -3.341  -2.415  -1.846  O2S    L3U  25  
L3U  "O3'"  O6   O  0  1  N  N  N   -6.905  -3.382  -31.322   2.732  -3.967   0.975  "O3'"  L3U  26  
L3U  O4     O7   O  0  1  N  N  N  -11.558  -7.286  -25.518   3.857   4.354   0.088  O4     L3U  27  
L3U  "O4'"  O8   O  0  1  N  N  N   -7.150  -6.184  -29.689   1.416  -1.176  -0.487  "O4'"  L3U  28  
L3U  "O5'"  O9   O  0  1  N  N  N   -5.010  -5.312  -28.082  -1.213  -2.368  -0.832  "O5'"  L3U  29  
L3U  S      S1   S  0  1  N  N  N   -3.766  -5.287  -27.085  -2.712  -2.396  -0.572  S      L3U  30  
L3U  H1     H1   H  0  1  N  N  N   -0.309  -3.521  -27.678  -1.688   2.541  -0.589  H1     L3U  31  
L3U  H2     H2   H  0  1  N  N  N   -0.778  -3.912  -29.193  -2.981   2.622  -1.632  H2     L3U  32  
L3U  H4     H4   H  0  1  N  N  N   -1.291  -1.346  -27.847  -3.018   1.519   1.102  H4     L3U  33  
L3U  H5     H5   H  0  1  N  N  N   -2.896  -1.081  -29.826  -5.187   1.753  -1.033  H5     L3U  34  
L3U  H6     H6   H  0  1  N  N  N   -1.993  -2.425  -30.603  -5.354   0.859   0.498  H6     L3U  35  
L3U  H7     H7   H  0  1  N  N  N    0.104  -1.081  -30.375  -4.677   3.827   0.301  H7     L3U  36  
L3U  H8     H8   H  0  1  N  N  N   -0.628   0.295  -28.454  -6.961   3.399  -0.514  H8     L3U  37  
L3U  H9     H9   H  0  1  N  N  N   -0.089   1.318  -29.828  -7.308   2.412   0.926  H9     L3U  38  
L3U  H10    H10  H  0  1  N  N  N   -1.842   1.108  -29.499  -7.021   4.161   1.094  H10    L3U  39  
L3U  H11    H11  H  0  1  N  N  N   -0.446   0.521  -32.180  -3.859   2.682   2.343  H11    L3U  40  
L3U  H12    H12  H  0  1  N  N  N   -1.194  -1.087  -32.469  -5.195   3.794   2.726  H12    L3U  41  
L3U  H13    H13  H  0  1  N  N  N   -2.196   0.274  -31.861  -5.493   2.041   2.638  H13    L3U  42  
L3U  H14    H14  H  0  1  N  N  N   -8.871  -5.260  -30.383   3.481  -1.436  -0.728  H14    L3U  43  
L3U  H15    H15  H  0  1  N  N  N   -7.350  -4.042  -28.029   2.413  -0.866   2.094  H15    L3U  44  
L3U  H16    H16  H  0  1  N  N  N   -5.746  -3.301  -29.587   1.306  -2.938   2.080  H16    L3U  45  
L3U  H17    H17  H  0  1  N  N  N  -13.194  -7.055  -27.006   5.425   3.071  -2.256  H17    L3U  46  
L3U  H18    H18  H  0  1  N  N  N  -13.086  -5.681  -28.159   6.001   3.700  -0.694  H18    L3U  47  
L3U  H19    H19  H  0  1  N  N  N  -12.868  -7.365  -28.745   6.422   2.045  -1.197  H19    L3U  48  
L3U  H20    H20  H  0  1  N  N  N   -5.931  -5.557  -31.264   1.271  -3.222  -0.825  H20    L3U  49  
L3U  H21    H21  H  0  1  N  N  N   -8.903  -7.109  -25.275   1.759   3.332   1.190  H21    L3U  50  
L3U  H22    H22  H  0  1  N  N  N   -4.564  -6.748  -29.552  -0.645  -3.502   0.799  H22    L3U  51  
L3U  H23    H23  H  0  1  N  N  N   -3.958  -5.092  -29.889  -0.634  -1.740   1.049  H23    L3U  52  
L3U  H24    H24  H  0  1  N  N  N   -7.516  -6.244  -27.042   1.296   0.938   1.105  H24    L3U  53  
L3U  H25    H25  H  0  1  N  N  N   -1.770  -4.675  -27.861  -3.447  -0.926   1.037  H25    L3U  54  
L3U  H26    H26  H  0  1  N  N  N   -9.427  -3.188  -28.590   4.250  -2.312   2.582  H26    L3U  55  
L3U  H27    H27  H  0  1  N  N  N   -7.197  -2.483  -31.228   3.338  -4.173   1.699  H27    L3U  56  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
L3U  CD2    CG     SING  N  N   1  
L3U  "O3'"  "C3'"  SING  N  N   2  
L3U  CG     CB     SING  N  N   3  
L3U  CG     CD1    SING  N  N   4  
L3U  "C4'"  "C3'"  SING  N  N   5  
L3U  "C4'"  "O4'"  SING  N  N   6  
L3U  "C4'"  "C5'"  SING  N  N   7  
L3U  "C3'"  "C2'"  SING  N  N   8  
L3U  CB     CA     SING  N  N   9  
L3U  O2     C2     DOUB  N  N  10  
L3U  "O4'"  "C1'"  SING  N  N  11  
L3U  "C5'"  "O5'"  SING  N  N  12  
L3U  "C1'"  "C2'"  SING  N  N  13  
L3U  "C1'"  N1     SING  N  N  14  
L3U  "O2'"  "C2'"  SING  N  N  15  
L3U  C2     N1     SING  N  N  16  
L3U  C2     N3     SING  N  N  17  
L3U  N      CA     SING  N  N  18  
L3U  CA     C      SING  N  N  19  
L3U  N1     C6     SING  N  N  20  
L3U  "O5'"  S      SING  N  N  21  
L3U  C3U    N3     SING  N  N  22  
L3U  C      N3S    SING  N  N  23  
L3U  C      O      DOUB  N  N  24  
L3U  N3     C4     SING  N  N  25  
L3U  N3S    S      SING  N  N  26  
L3U  C6     C5     DOUB  N  N  27  
L3U  O2S    S      DOUB  N  N  28  
L3U  S      O1S    DOUB  N  N  29  
L3U  C4     C5     SING  N  N  30  
L3U  C4     O4     DOUB  N  N  31  
L3U  N      H1     SING  N  N  32  
L3U  N      H2     SING  N  N  33  
L3U  CA     H4     SING  N  N  34  
L3U  CB     H5     SING  N  N  35  
L3U  CB     H6     SING  N  N  36  
L3U  CG     H7     SING  N  N  37  
L3U  CD1    H8     SING  N  N  38  
L3U  CD1    H9     SING  N  N  39  
L3U  CD1    H10    SING  N  N  40  
L3U  CD2    H11    SING  N  N  41  
L3U  CD2    H12    SING  N  N  42  
L3U  CD2    H13    SING  N  N  43  
L3U  "C1'"  H14    SING  N  N  44  
L3U  "C2'"  H15    SING  N  N  45  
L3U  "C3'"  H16    SING  N  N  46  
L3U  C3U    H17    SING  N  N  47  
L3U  C3U    H18    SING  N  N  48  
L3U  C3U    H19    SING  N  N  49  
L3U  "C4'"  H20    SING  N  N  50  
L3U  C5     H21    SING  N  N  51  
L3U  "C5'"  H22    SING  N  N  52  
L3U  "C5'"  H23    SING  N  N  53  
L3U  C6     H24    SING  N  N  54  
L3U  N3S    H25    SING  N  N  55  
L3U  "O2'"  H26    SING  N  N  56  
L3U  "O3'"  H27    SING  N  N  57  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
L3U  InChI             InChI                 1.03   "InChI=1S/C16H26N4O9S/c1-8(2)6-9(17)14(24)18-30(26,27)28-7-10-12(22)13(23)15(29-10)20-5-4-11(21)19(3)16(20)25/h4-5,8-10,12-13,15,22-23H,6-7,17H2,1-3H3,(H,18,24)/t9-,10+,12+,13+,15+/m0/s1"  
L3U  InChIKey          InChI                 1.03   IHQCOGYAMSEDBL-KHBBOIOASA-N  
L3U  SMILES_CANONICAL  CACTVS                3.385  "CC(C)C[C@H](N)C(=O)N[S](=O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)N2C=CC(=O)N(C)C2=O"  
L3U  SMILES            CACTVS                3.385  "CC(C)C[CH](N)C(=O)N[S](=O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)N2C=CC(=O)N(C)C2=O"  
L3U  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "CC(C)C[C@@H](C(=O)NS(=O)(=O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)N2C=CC(=O)N(C2=O)C)O)O)N"  
L3U  SMILES            "OpenEye OEToolkits"  2.0.6  "CC(C)CC(C(=O)NS(=O)(=O)OCC1C(C(C(O1)N2C=CC(=O)N(C2=O)C)O)O)N"  
#
_pdbx_chem_comp_identifier.comp_id          L3U
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.6
_pdbx_chem_comp_identifier.identifier       "[(2~{R},3~{S},4~{R},5~{R})-5-[3-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl ~{N}-[(2~{S})-2-azanyl-4-methyl-pentanoyl]sulfamate"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
L3U  "Create component"  2018-12-17  EBI   
L3U  "Initial release"   2019-04-17  RCSB  
##
