data_KZU
# 
_chem_comp.id                                    KZU 
_chem_comp.name                                  "2-(4,6-dimethylpyrimidin-2-yl)sulfanyl-N-[5-[[3-[[1-(2-methoxyethyl)-1,2,3-triazol-4-yl]methoxy]phenyl]methyl]-1,3-thiazol-2-yl]ethanamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H27 N7 O3 S2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "triazole-based sirtuin-rearranging ligand (SirReal)" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-06-08 
_chem_comp.pdbx_modified_date                    2023-11-10 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        525.646 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     KZU 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8OWZ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
KZU C25 C1  C 0 1 N N N N N N 4.285  16.107 8.102  -5.709  0.971  -1.605 C25 KZU 1  
KZU C23 C2  C 0 1 Y N N N N N 2.536  17.245 6.914  -3.994  2.184  -0.491 C23 KZU 2  
KZU C22 C3  C 0 1 Y N N N N N 2.977  16.769 5.691  -4.030  3.089  -1.541 C22 KZU 3  
KZU C21 C4  C 0 1 Y N N N N N 2.191  16.976 4.569  -3.187  4.184  -1.538 C21 KZU 4  
KZU C19 C5  C 0 1 Y N N N N N 0.536  18.125 5.891  -2.266  3.474  0.557  C19 KZU 5  
KZU C32 C6  C 0 1 N N N N N N -1.459 12.353 8.296  -10.927 -4.486 1.675  C32 KZU 6  
KZU C35 C7  C 0 1 Y N N N N N 1.325  17.918 7.018  -3.111  2.381  0.561  C35 KZU 7  
KZU C17 C8  C 0 1 Y N N N N N -0.769 20.091 6.846  -0.003  2.995  1.397  C17 KZU 8  
KZU C16 C9  C 0 1 Y N N N N N -0.428 21.333 6.408  1.039   3.531  0.759  C16 KZU 9  
KZU C5  C10 C 0 1 Y N N N N N 1.369  24.896 11.315 7.663   -1.051 -0.433 C5  KZU 10 
KZU C7  C11 C 0 1 Y N N N N N 1.097  25.921 9.313  7.984   -3.234 0.224  C7  KZU 11 
KZU C3  C12 C 0 1 N N N N N N -0.915 23.436 11.938 5.161   -0.280 0.362  C3  KZU 12 
KZU C2  C13 C 0 1 N N N N N N -1.093 22.348 10.895 4.102   0.791  0.431  C2  KZU 13 
KZU C18 C14 C 0 1 N N N N N N -0.792 18.843 6.013  -1.307  3.688  1.700  C18 KZU 14 
KZU C14 C15 C 0 1 Y N N N N N -0.759 21.878 8.511  1.946   1.522  1.091  C14 KZU 15 
KZU C10 C16 C 0 1 Y N N N N N 2.858  26.518 10.797 9.681   -2.034 -0.943 C10 KZU 16 
KZU C11 C17 C 0 1 N N N N N N 4.057  27.330 11.189 11.054  -1.954 -1.559 C11 KZU 17 
KZU C20 C18 C 0 1 Y N N N N N 0.982  17.647 4.668  -2.308  4.378  -0.488 C20 KZU 18 
KZU C26 C19 C 0 1 Y N N N N N 3.639  14.800 8.415  -6.549  -0.268 -1.430 C26 KZU 19 
KZU C27 C20 C 0 1 Y N N N N N 3.203  13.812 7.581  -6.507  -1.134 -0.391 C27 KZU 20 
KZU C29 C21 C 0 1 N N N N N N 2.101  11.582 8.034  -7.742  -3.241 0.189  C29 KZU 21 
KZU C30 C22 C 0 1 N N N N N N 0.679  11.736 7.561  -9.240  -3.255 0.499  C30 KZU 22 
KZU C8  C23 C 0 1 N N N N N N 0.347  26.035 8.018  7.478   -4.482 0.901  C8  KZU 23 
KZU C9  C24 C 0 1 Y N N N N N 2.201  26.707 9.593  9.254   -3.202 -0.330 C9  KZU 24 
KZU N12 N1  N 0 1 Y N N N N N 2.442  25.597 11.678 8.872   -0.988 -0.972 N12 KZU 25 
KZU N13 N2  N 0 1 N N N N N N -0.732 22.705 9.622  2.922   0.534  1.028  N13 KZU 26 
KZU N15 N3  N 0 1 Y N N N N N -0.418 22.351 7.341  2.069   2.719  0.610  N15 KZU 27 
KZU N28 N4  N 0 1 Y N N N N N 2.695  12.869 8.393  -7.429  -2.088 -0.659 N28 KZU 28 
KZU N33 N5  N 0 1 Y N N N N N 2.801  13.238 9.679  -7.985  -1.807 -1.785 N33 KZU 29 
KZU N34 N6  N 0 1 Y N N N N N 3.378  14.419 9.691  -7.486  -0.724 -2.269 N34 KZU 30 
KZU N6  N7  N 0 1 Y N N N N N 0.664  24.996 10.184 7.223   -2.154 0.157  N6  KZU 31 
KZU O1  O1  O 0 1 N N N N N N -1.587 21.260 11.175 4.314   1.884  -0.051 O1  KZU 32 
KZU O24 O2  O 0 1 N N N N N N 3.247  17.083 8.080  -4.827  1.110  -0.489 O24 KZU 33 
KZU O31 O3  O 0 1 N N N N N N -0.128 12.045 8.672  -9.546  -4.379 1.326  O31 KZU 34 
KZU S36 S1  S 0 1 Y N N N N N -1.113 20.170 8.544  0.409   1.334  1.816  S36 KZU 35 
KZU S4  S2  S 0 1 N N N N N N 0.799  23.752 12.511 6.619   0.366  -0.493 S4  KZU 36 
KZU H1  H1  H 0 1 N N N N N N 4.781  16.059 7.121  -5.125  0.888  -2.522 H1  KZU 37 
KZU H2  H2  H 0 1 N N N N N N 5.025  16.359 8.876  -6.358  1.845  -1.666 H2  KZU 38 
KZU H3  H3  H 0 1 N N N N N N 3.918  16.245 5.613  -4.716  2.938  -2.362 H3  KZU 39 
KZU H4  H4  H 0 1 N N N N N N 2.523  16.611 3.608  -3.214  4.889  -2.356 H4  KZU 40 
KZU H5  H5  H 0 1 N N N N N N -2.049 12.587 9.194  -11.525 -4.582 0.769  H5  KZU 41 
KZU H6  H6  H 0 1 N N N N N N -1.458 13.222 7.622  -11.076 -5.365 2.303  H6  KZU 42 
KZU H7  H7  H 0 1 N N N N N N -1.903 11.489 7.780  -11.234 -3.594 2.220  H7  KZU 43 
KZU H8  H8  H 0 1 N N N N N N 0.994  18.283 7.979  -3.085  1.681  1.383  H8  KZU 44 
KZU H9  H9  H 0 1 N N N N N N -0.176 21.515 5.374  1.040   4.548  0.393  H9  KZU 45 
KZU H10 H10 H 0 1 N N N N N N -1.303 24.373 11.512 5.437   -0.584 1.372  H10 KZU 46 
KZU H11 H11 H 0 1 N N N N N N -1.515 23.157 12.817 4.772   -1.141 -0.183 H11 KZU 47 
KZU H12 H12 H 0 1 N N N N N N -1.126 19.115 5.001  -1.130  4.755  1.830  H12 KZU 48 
KZU H13 H13 H 0 1 N N N N N N -1.515 18.147 6.463  -1.733  3.275  2.614  H13 KZU 49 
KZU H14 H14 H 0 1 N N N N N N 4.406  27.013 12.183 11.769  -1.613 -0.810 H14 KZU 50 
KZU H15 H15 H 0 1 N N N N N N 4.860  27.177 10.453 11.348  -2.940 -1.920 H15 KZU 51 
KZU H16 H16 H 0 1 N N N N N N 3.785  28.395 11.218 11.038  -1.252 -2.392 H16 KZU 52 
KZU H17 H17 H 0 1 N N N N N N 0.381  17.799 3.784  -1.649  5.233  -0.488 H17 KZU 53 
KZU H18 H18 H 0 1 N N N N N N 3.255  13.792 6.502  -5.867  -1.076 0.477  H18 KZU 54 
KZU H19 H19 H 0 1 N N N N N N 2.114  10.925 8.916  -7.179  -3.171 1.120  H19 KZU 55 
KZU H20 H20 H 0 1 N N N N N N 2.697  11.127 7.229  -7.470  -4.159 -0.332 H20 KZU 56 
KZU H21 H21 H 0 1 N N N N N N 0.619  12.548 6.821  -9.512  -2.336 1.020  H21 KZU 57 
KZU H22 H22 H 0 1 N N N N N N 0.336  10.797 7.103  -9.803  -3.324 -0.432 H22 KZU 58 
KZU H23 H23 H 0 1 N N N N N N -0.473 25.302 8.003  7.739   -4.453 1.959  H23 KZU 59 
KZU H24 H24 H 0 1 N N N N N N -0.067 27.050 7.922  6.395   -4.539 0.795  H24 KZU 60 
KZU H25 H25 H 0 1 N N N N N N 1.031  25.837 7.180  7.935   -5.357 0.438  H25 KZU 61 
KZU H26 H26 H 0 1 N N N N N N 2.542  27.451 8.888  9.896   -4.070 -0.289 H26 KZU 62 
KZU H27 H27 H 0 1 N N N N N N -0.422 23.645 9.483  2.753   -0.340 1.413  H27 KZU 63 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
KZU C21 C20 DOUB Y N 1  
KZU C21 C22 SING Y N 2  
KZU C20 C19 SING Y N 3  
KZU C22 C23 DOUB Y N 4  
KZU C19 C18 SING N N 5  
KZU C19 C35 DOUB Y N 6  
KZU C18 C17 SING N N 7  
KZU C16 C17 DOUB Y N 8  
KZU C16 N15 SING Y N 9  
KZU C17 S36 SING Y N 10 
KZU C23 C35 SING Y N 11 
KZU C23 O24 SING N N 12 
KZU N15 C14 DOUB Y N 13 
KZU C30 C29 SING N N 14 
KZU C30 O31 SING N N 15 
KZU C27 N28 SING Y N 16 
KZU C27 C26 DOUB Y N 17 
KZU C8  C7  SING N N 18 
KZU C29 N28 SING N N 19 
KZU O24 C25 SING N N 20 
KZU C25 C26 SING N N 21 
KZU C32 O31 SING N N 22 
KZU N28 N33 SING Y N 23 
KZU C26 N34 SING Y N 24 
KZU C14 S36 SING Y N 25 
KZU C14 N13 SING N N 26 
KZU C7  C9  DOUB Y N 27 
KZU C7  N6  SING Y N 28 
KZU C9  C10 SING Y N 29 
KZU N13 C2  SING N N 30 
KZU N33 N34 DOUB Y N 31 
KZU N6  C5  DOUB Y N 32 
KZU C10 C11 SING N N 33 
KZU C10 N12 DOUB Y N 34 
KZU C2  O1  DOUB N N 35 
KZU C2  C3  SING N N 36 
KZU C5  N12 SING Y N 37 
KZU C5  S4  SING N N 38 
KZU C3  S4  SING N N 39 
KZU C25 H1  SING N N 40 
KZU C25 H2  SING N N 41 
KZU C22 H3  SING N N 42 
KZU C21 H4  SING N N 43 
KZU C32 H5  SING N N 44 
KZU C32 H6  SING N N 45 
KZU C32 H7  SING N N 46 
KZU C35 H8  SING N N 47 
KZU C16 H9  SING N N 48 
KZU C3  H10 SING N N 49 
KZU C3  H11 SING N N 50 
KZU C18 H12 SING N N 51 
KZU C18 H13 SING N N 52 
KZU C11 H14 SING N N 53 
KZU C11 H15 SING N N 54 
KZU C11 H16 SING N N 55 
KZU C20 H17 SING N N 56 
KZU C27 H18 SING N N 57 
KZU C29 H19 SING N N 58 
KZU C29 H20 SING N N 59 
KZU C30 H21 SING N N 60 
KZU C30 H22 SING N N 61 
KZU C8  H23 SING N N 62 
KZU C8  H24 SING N N 63 
KZU C8  H25 SING N N 64 
KZU C9  H26 SING N N 65 
KZU N13 H27 SING N N 66 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
KZU InChI            InChI                1.06  "InChI=1S/C24H27N7O3S2/c1-16-9-17(2)27-24(26-16)35-15-22(32)28-23-25-12-21(36-23)11-18-5-4-6-20(10-18)34-14-19-13-31(30-29-19)7-8-33-3/h4-6,9-10,12-13H,7-8,11,14-15H2,1-3H3,(H,25,28,32)" 
KZU InChIKey         InChI                1.06  MAUGCLAAQLDMTD-UHFFFAOYSA-N                                                                                                                                                                
KZU SMILES_CANONICAL CACTVS               3.385 "COCCn1cc(COc2cccc(Cc3sc(NC(=O)CSc4nc(C)cc(C)n4)nc3)c2)nn1"                                                                                                                                
KZU SMILES           CACTVS               3.385 "COCCn1cc(COc2cccc(Cc3sc(NC(=O)CSc4nc(C)cc(C)n4)nc3)c2)nn1"                                                                                                                                
KZU SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc(nc(n1)SCC(=O)Nc2ncc(s2)Cc3cccc(c3)OCc4cn(nn4)CCOC)C"                                                                                                                                
KZU SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1cc(nc(n1)SCC(=O)Nc2ncc(s2)Cc3cccc(c3)OCc4cn(nn4)CCOC)C"                                                                                                                                
# 
_pdbx_chem_comp_identifier.comp_id           KZU 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "2-(4,6-dimethylpyrimidin-2-yl)sulfanyl-~{N}-[5-[[3-[[1-(2-methoxyethyl)-1,2,3-triazol-4-yl]methoxy]phenyl]methyl]-1,3-thiazol-2-yl]ethanamide" 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      KZU 
_pdbx_chem_comp_synonyms.name         "triazole-based sirtuin-rearranging ligand (SirReal)" 
_pdbx_chem_comp_synonyms.provenance   AUTHOR 
_pdbx_chem_comp_synonyms.type         ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
KZU "Create component" 2023-05-03 PDBE 
KZU "Initial release"  2023-11-15 RCSB 
# 
