data_KPU
# 
_chem_comp.id                                    KPU 
_chem_comp.name                                  "(2~{S})-2-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]-4-oxidanyl-butanoic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C12 H19 N2 O8 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-10-05 
_chem_comp.pdbx_modified_date                    2023-08-11 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        350.262 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     KPU 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8H1Y 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
KPU P   P1  P 0 1 N N N 41.631 9.539  49.427 -3.948 -0.963 0.241  P   KPU 1  
KPU O1P O1  O 0 1 N N N 42.056 10.890 50.007 -5.370 -0.516 -0.367 O1P KPU 2  
KPU O2P O2  O 0 1 N N N 41.042 8.643  50.475 -4.111 -1.278 1.812  O2P KPU 3  
KPU O3P O3  O 0 1 N N N 42.707 8.875  48.656 -3.470 -2.176 -0.458 O3P KPU 4  
KPU O4P O4  O 0 1 N N N 40.508 9.939  48.302 -2.881 0.227  0.041  O4P KPU 5  
KPU C5A C1  C 0 1 N N N 39.381 10.728 48.672 -1.499 0.099  0.382  C5A KPU 6  
KPU C5  C2  C 0 1 Y N N 38.193 10.249 47.874 -0.784 1.388  0.071  C5  KPU 7  
KPU C6  C3  C 0 1 Y N N 37.864 10.877 46.725 -1.475 2.461  -0.458 C6  KPU 8  
KPU N1  N1  N 0 1 Y N N 36.819 10.538 45.959 -0.859 3.596  -0.730 N1  KPU 9  
KPU C4  C4  C 0 1 Y N N 37.386 9.091  48.264 0.575  1.513  0.316  C4  KPU 10 
KPU C3  C5  C 0 1 Y N N 36.224 8.721  47.440 1.193  2.721  0.013  C3  KPU 11 
KPU O3  O5  O 0 1 N N N 35.443 7.663  47.770 2.523  2.890  0.237  O3  KPU 12 
KPU C2  C6  C 0 1 Y N N 36.010 9.476  46.198 0.431  3.755  -0.511 C2  KPU 13 
KPU C2A C7  C 0 1 N N N 34.876 9.126  45.317 1.085  5.072  -0.840 C2A KPU 14 
KPU C4A C8  C 0 1 N N N 37.726 8.447  49.578 1.362  0.367  0.899  C4A KPU 15 
KPU N   N2  N 0 1 N N N 36.960 7.265  49.877 1.891  -0.466 -0.190 N   KPU 16 
KPU CA  C9  C 0 1 N N S 37.086 6.658  51.230 2.667  -1.595 0.342  CA  KPU 17 
KPU C   C10 C 0 1 N N N 35.844 7.041  52.014 4.083  -1.153 0.605  C   KPU 18 
KPU OXT O6  O 0 1 N N N 35.586 6.279  53.020 4.978  -2.024 1.096  OXT KPU 19 
KPU O   O7  O 0 1 N N N 35.132 8.067  51.699 4.413  -0.014 0.373  O   KPU 20 
KPU CB  C11 C 0 1 N N N 38.343 7.011  52.065 2.670  -2.736 -0.678 CB  KPU 21 
KPU CC  C12 C 0 1 N N N 39.560 6.166  51.761 1.246  -3.269 -0.852 CC  KPU 22 
KPU OG  O8  O 0 1 N N N 39.980 6.243  50.453 1.249  -4.334 -1.804 OG  KPU 23 
KPU H1  H1  H 0 1 N N N 42.957 11.070 49.765 -6.062 -1.186 -0.281 H1  KPU 24 
KPU H2  H2  H 0 1 N N N 41.476 7.798  50.451 -4.421 -0.525 2.334  H2  KPU 25 
KPU H3  H3  H 0 1 N N N 39.578 11.787 48.449 -1.407 -0.120 1.446  H3  KPU 26 
KPU H4  H4  H 0 1 N N N 39.180 10.611 49.747 -1.056 -0.712 -0.195 H4  KPU 27 
KPU H5  H5  H 0 1 N N N 38.481 11.703 46.404 -2.534 2.370  -0.651 H5  KPU 28 
KPU H6  H6  H 0 1 N N N 35.730 7.304  48.602 3.082  2.645  -0.513 H6  KPU 29 
KPU H7  H7  H 0 1 N N N 34.820 9.846  44.487 1.041  5.727  0.030  H7  KPU 30 
KPU H8  H8  H 0 1 N N N 35.024 8.113  44.915 2.127  4.902  -1.113 H8  KPU 31 
KPU H9  H9  H 0 1 N N N 33.940 9.159  45.894 0.562  5.540  -1.674 H9  KPU 32 
KPU H10 H10 H 0 1 N N N 38.791 8.172  49.561 2.189  0.759  1.491  H10 KPU 33 
KPU H11 H11 H 0 1 N N N 37.550 9.182  50.377 0.712  -0.235 1.534  H11 KPU 34 
KPU H12 H12 H 0 1 N N N 35.996 7.498  49.747 1.149  -0.789 -0.792 H12 KPU 35 
KPU H14 H14 H 0 1 N N N 37.075 5.565  51.110 2.215  -1.940 1.272  H14 KPU 36 
KPU H15 H15 H 0 1 N N N 34.810 6.596  53.468 5.874  -1.694 1.248  H15 KPU 37 
KPU H16 H16 H 0 1 N N N 38.599 8.063  51.871 3.039  -2.367 -1.635 H16 KPU 38 
KPU H17 H17 H 0 1 N N N 38.095 6.884  53.129 3.317  -3.538 -0.324 H17 KPU 39 
KPU H18 H18 H 0 1 N N N 39.318 5.117  51.986 0.877  -3.638 0.105  H18 KPU 40 
KPU H19 H19 H 0 1 N N N 40.384 6.499  52.409 0.599  -2.466 -1.206 H19 KPU 41 
KPU H20 H20 H 0 1 N N N 40.744 5.691  50.332 0.377  -4.720 -1.965 H20 KPU 42 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
KPU C2A C2  SING N N 1  
KPU N1  C2  DOUB Y N 2  
KPU N1  C6  SING Y N 3  
KPU C2  C3  SING Y N 4  
KPU C6  C5  DOUB Y N 5  
KPU C3  O3  SING N N 6  
KPU C3  C4  DOUB Y N 7  
KPU C5  C4  SING Y N 8  
KPU C5  C5A SING N N 9  
KPU C4  C4A SING N N 10 
KPU O4P C5A SING N N 11 
KPU O4P P   SING N N 12 
KPU O3P P   DOUB N N 13 
KPU P   O1P SING N N 14 
KPU P   O2P SING N N 15 
KPU C4A N   SING N N 16 
KPU N   CA  SING N N 17 
KPU OG  CC  SING N N 18 
KPU CA  C   SING N N 19 
KPU CA  CB  SING N N 20 
KPU O   C   DOUB N N 21 
KPU CC  CB  SING N N 22 
KPU C   OXT SING N N 23 
KPU O1P H1  SING N N 24 
KPU O2P H2  SING N N 25 
KPU C5A H3  SING N N 26 
KPU C5A H4  SING N N 27 
KPU C6  H5  SING N N 28 
KPU O3  H6  SING N N 29 
KPU C2A H7  SING N N 30 
KPU C2A H8  SING N N 31 
KPU C2A H9  SING N N 32 
KPU C4A H10 SING N N 33 
KPU C4A H11 SING N N 34 
KPU N   H12 SING N N 35 
KPU CA  H14 SING N N 36 
KPU OXT H15 SING N N 37 
KPU CB  H16 SING N N 38 
KPU CB  H17 SING N N 39 
KPU CC  H18 SING N N 40 
KPU CC  H19 SING N N 41 
KPU OG  H20 SING N N 42 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
KPU InChI            InChI                1.06  "InChI=1S/C12H19N2O8P/c1-7-11(16)9(5-14-10(2-3-15)12(17)18)8(4-13-7)6-22-23(19,20)21/h4,10,14-16H,2-3,5-6H2,1H3,(H,17,18)(H2,19,20,21)/t10-/m0/s1" 
KPU InChIKey         InChI                1.06  GLDZRPISEAFFFS-JTQLQIEISA-N                                                                                                                        
KPU SMILES_CANONICAL CACTVS               3.385 "Cc1ncc(CO[P](O)(O)=O)c(CN[C@@H](CCO)C(O)=O)c1O"                                                                                                   
KPU SMILES           CACTVS               3.385 "Cc1ncc(CO[P](O)(O)=O)c(CN[CH](CCO)C(O)=O)c1O"                                                                                                     
KPU SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(c(c(cn1)COP(=O)(O)O)CN[C@@H](CCO)C(=O)O)O"                                                                                                   
KPU SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1c(c(c(cn1)COP(=O)(O)O)CNC(CCO)C(=O)O)O"                                                                                                        
# 
_pdbx_chem_comp_identifier.comp_id           KPU 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{S})-2-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]-4-oxidanyl-butanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
KPU "Create component" 2022-10-05 PDBJ 
KPU "Initial release"  2023-08-16 RCSB 
# 
