data_K9U
# 
_chem_comp.id                                    K9U 
_chem_comp.name                                  "(2S)-4-(3,4-dichlorophenyl)-1-[(2-oxidanylidene-1H-quinolin-4-yl)carbonyl]-N-[3,3,3-tris(fluoranyl)propyl]piperazine-2-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H21 Cl2 F3 N4 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-09-14 
_chem_comp.pdbx_modified_date                    2023-09-08 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        541.350 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     K9U 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8GTW 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
K9U N1  N1  N  0 1 N N N -5.528  16.383 41.251 -1.332 0.789  0.207  N1  K9U 1  
K9U N3  N2  N  0 1 N N N -0.036  12.702 38.257 5.493  3.198  -0.495 N3  K9U 2  
K9U C4  C1  C  0 1 Y N N -9.641  16.908 41.681 -5.209 2.303  0.374  C4  K9U 3  
K9U C5  C2  C  0 1 Y N N -9.137  16.072 40.690 -4.476 2.409  -0.796 C5  K9U 4  
K9U C6  C3  C  0 1 Y N N -7.773  15.886 40.551 -3.189 1.908  -0.854 C6  K9U 5  
K9U C7  C4  C  0 1 N N N -4.967  15.225 40.539 -0.378 1.827  -0.205 C7  K9U 6  
K9U C8  C5  C  0 1 N N N -3.575  14.860 40.998 0.998  1.192  -0.429 C8  K9U 7  
K9U C10 C6  C  0 1 N N N -4.608  17.493 41.523 -0.946 0.189  1.491  C10 K9U 8  
K9U C13 C7  C  0 1 Y N N -0.300  13.903 40.313 4.672  0.969  -0.065 C13 K9U 9  
K9U C15 C8  C  0 1 N N N -0.691  13.633 37.517 4.500  3.733  0.237  C15 K9U 10 
K9U C17 C9  C  0 1 Y N N -0.072  13.970 41.701 4.792  -0.413 -0.243 C17 K9U 11 
K9U C20 C10 C  0 1 Y N N 0.867   11.765 40.295 6.635  1.301  -1.433 C20 K9U 12 
K9U C21 C11 C  0 1 N N N -2.690  16.849 43.214 0.266  -1.684 0.397  C21 K9U 13 
K9U C22 C12 C  0 1 N N N -2.716  18.846 44.735 -0.385 -3.986 -0.068 C22 K9U 14 
K9U C24 C13 C  0 1 N N N -4.998  19.016 45.823 -1.132 -6.361 -0.268 C24 K9U 15 
K9U C1  C14 C  0 1 Y N N -6.889  16.531 41.419 -2.633 1.297  0.262  C1  K9U 16 
K9U C11 C15 C  0 1 N N N -1.501  16.125 40.275 2.569  0.643  1.373  C11 K9U 17 
K9U C12 C16 C  0 1 N N N -0.981  14.925 39.580 3.573  1.530  0.736  C12 K9U 18 
K9U C14 C17 C  0 1 Y N N 0.183   12.781 39.618 5.603  1.835  -0.665 C14 K9U 19 
K9U C16 C18 C  0 1 N N N -1.188  14.783 38.233 3.499  2.886  0.881  C16 K9U 20 
K9U C18 C19 C  0 1 Y N N 0.605   12.977 42.354 5.819  -0.915 -0.990 C18 K9U 21 
K9U C19 C20 C  0 1 Y N N 1.068   11.873 41.648 6.733  -0.064 -1.595 C19 K9U 22 
K9U C2  C21 C  0 1 Y N N -7.406  17.392 42.396 -3.371 1.192  1.434  C2  K9U 23 
K9U C23 C22 C  0 1 N N N -4.215  18.940 44.556 -0.988 -5.173 0.684  C23 K9U 24 
K9U C3  C23 C  0 1 Y N N -8.776  17.570 42.535 -4.655 1.699  1.489  C3  K9U 25 
K9U C9  C24 C  0 1 N N S -3.131  17.114 41.756 0.407  -0.514 1.336  C9  K9U 26 
K9U F1  F1  F  0 1 N N N -6.299  19.090 45.573 -1.971 -6.008 -1.331 F1  K9U 27 
K9U F2  F2  F  0 1 N N N -4.705  20.073 46.578 0.126  -6.716 -0.766 F2  K9U 28 
K9U F3  F3  F  0 1 N N N -4.816  17.945 46.589 -1.684 -7.447 0.420  F3  K9U 29 
K9U N2  N3  N  0 1 N N N -2.709  16.030 40.867 1.373  0.449  0.784  N2  K9U 30 
K9U N4  N4  N  0 1 N N N -2.098  17.875 43.831 -0.247 -2.848 0.844  N4  K9U 31 
K9U O1  O1  O  0 1 N N N -0.866  17.176 40.283 2.825  0.093  2.425  O1  K9U 32 
K9U O2  O2  O  0 1 N N N -0.855  13.470 36.289 4.435  4.943  0.366  O2  K9U 33 
K9U O3  O3  O  0 1 N N N -2.831  15.754 43.777 0.613  -1.579 -0.760 O3  K9U 34 
K9U CL1 CL1 CL 0 0 N N N -11.350 17.138 41.861 -6.825 2.934  0.445  CL1 K9U 35 
K9U CL2 CL2 CL 0 0 N N N -10.193 15.228 39.607 -5.173 3.173  -2.190 CL2 K9U 36 
K9U H1  H1  H  0 1 N N N 0.315   11.897 37.779 6.142  3.784  -0.915 H1  K9U 37 
K9U H2  H2  H  0 1 N N N -7.392  15.242 39.772 -2.617 1.991  -1.766 H2  K9U 38 
K9U H3  H3  H  0 1 N N N -4.930  15.459 39.465 -0.721 2.289  -1.131 H3  K9U 39 
K9U H4  H4  H  0 1 N N N -5.627  14.360 40.703 -0.306 2.585  0.576  H4  K9U 40 
K9U H5  H5  H  0 1 N N N -3.606  14.540 42.050 0.952  0.509  -1.278 H5  K9U 41 
K9U H6  H6  H  0 1 N N N -3.185  14.041 40.376 1.734  1.972  -0.626 H6  K9U 42 
K9U H7  H7  H  0 1 N N N -4.647  18.179 40.664 -0.866 0.969  2.247  H7  K9U 43 
K9U H8  H8  H  0 1 N N N -4.967  18.013 42.424 -1.700 -0.537 1.794  H8  K9U 44 
K9U H9  H9  H  0 1 N N N -0.438  14.819 42.259 4.074  -1.081 0.210  H9  K9U 45 
K9U H10 H10 H  0 1 N N N 1.234   10.903 39.757 7.350  1.956  -1.908 H10 K9U 46 
K9U H11 H11 H  0 1 N N N -2.504  18.546 45.772 0.596  -4.262 -0.456 H11 K9U 47 
K9U H12 H12 H  0 1 N N N -2.276  19.836 44.542 -1.038 -3.711 -0.896 H12 K9U 48 
K9U H13 H13 H  0 1 N N N -1.733  15.546 37.697 2.707  3.328  1.467  H13 K9U 49 
K9U H14 H14 H  0 1 N N N 0.780   13.051 43.417 5.910  -1.983 -1.126 H14 K9U 50 
K9U H15 H15 H  0 1 N N N 1.594   11.089 42.172 7.528  -0.475 -2.200 H15 K9U 51 
K9U H16 H16 H  0 1 N N N -6.730  17.924 43.049 -2.940 0.717  2.303  H16 K9U 52 
K9U H17 H17 H  0 1 N N N -4.432  19.843 43.966 -0.335 -5.448 1.513  H17 K9U 53 
K9U H18 H18 H  0 1 N N N -4.549  18.051 44.002 -1.969 -4.897 1.072  H18 K9U 54 
K9U H19 H19 H  0 1 N N N -9.164  18.221 43.305 -5.227 1.621  2.401  H19 K9U 55 
K9U H20 H20 H  0 1 N N N -2.558  17.999 41.443 0.751  -0.864 2.309  H20 K9U 56 
K9U H21 H21 H  0 1 N N N -1.121  17.993 43.655 -0.525 -2.932 1.770  H21 K9U 57 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
K9U O2  C15 DOUB N N 1  
K9U C15 C16 SING N N 2  
K9U C15 N3  SING N N 3  
K9U C16 C12 DOUB N N 4  
K9U N3  C14 SING N N 5  
K9U C12 C11 SING N N 6  
K9U C12 C13 SING N N 7  
K9U CL2 C5  SING N N 8  
K9U C14 C20 DOUB Y N 9  
K9U C14 C13 SING Y N 10 
K9U C11 O1  DOUB N N 11 
K9U C11 N2  SING N N 12 
K9U C20 C19 SING Y N 13 
K9U C13 C17 DOUB Y N 14 
K9U C7  C8  SING N N 15 
K9U C7  N1  SING N N 16 
K9U C6  C5  DOUB Y N 17 
K9U C6  C1  SING Y N 18 
K9U C5  C4  SING Y N 19 
K9U N2  C8  SING N N 20 
K9U N2  C9  SING N N 21 
K9U N1  C1  SING N N 22 
K9U N1  C10 SING N N 23 
K9U C1  C2  DOUB Y N 24 
K9U C10 C9  SING N N 25 
K9U C19 C18 DOUB Y N 26 
K9U C4  CL1 SING N N 27 
K9U C4  C3  DOUB Y N 28 
K9U C17 C18 SING Y N 29 
K9U C9  C21 SING N N 30 
K9U C2  C3  SING Y N 31 
K9U C21 O3  DOUB N N 32 
K9U C21 N4  SING N N 33 
K9U N4  C22 SING N N 34 
K9U C23 C22 SING N N 35 
K9U C23 C24 SING N N 36 
K9U F1  C24 SING N N 37 
K9U C24 F2  SING N N 38 
K9U C24 F3  SING N N 39 
K9U N3  H1  SING N N 40 
K9U C6  H2  SING N N 41 
K9U C7  H3  SING N N 42 
K9U C7  H4  SING N N 43 
K9U C8  H5  SING N N 44 
K9U C8  H6  SING N N 45 
K9U C10 H7  SING N N 46 
K9U C10 H8  SING N N 47 
K9U C17 H9  SING N N 48 
K9U C20 H10 SING N N 49 
K9U C22 H11 SING N N 50 
K9U C22 H12 SING N N 51 
K9U C16 H13 SING N N 52 
K9U C18 H14 SING N N 53 
K9U C19 H15 SING N N 54 
K9U C2  H16 SING N N 55 
K9U C23 H17 SING N N 56 
K9U C23 H18 SING N N 57 
K9U C3  H19 SING N N 58 
K9U C9  H20 SING N N 59 
K9U N4  H21 SING N N 60 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
K9U InChI            InChI                1.06  "InChI=1S/C24H21Cl2F3N4O3/c25-17-6-5-14(11-18(17)26)32-9-10-33(20(13-32)22(35)30-8-7-24(27,28)29)23(36)16-12-21(34)31-19-4-2-1-3-15(16)19/h1-6,11-12,20H,7-10,13H2,(H,30,35)(H,31,34)/t20-/m0/s1" 
K9U InChIKey         InChI                1.06  QFILEVBXLNLABP-FQEVSTJZSA-N                                                                                                                                                                       
K9U SMILES_CANONICAL CACTVS               3.385 "FC(F)(F)CCNC(=O)[C@@H]1CN(CCN1C(=O)C2=CC(=O)Nc3ccccc23)c4ccc(Cl)c(Cl)c4"                                                                                                                         
K9U SMILES           CACTVS               3.385 "FC(F)(F)CCNC(=O)[CH]1CN(CCN1C(=O)C2=CC(=O)Nc3ccccc23)c4ccc(Cl)c(Cl)c4"                                                                                                                           
K9U SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)C(=CC(=O)N2)C(=O)N3CCN(C[C@H]3C(=O)NCCC(F)(F)F)c4ccc(c(c4)Cl)Cl"                                                                                                                      
K9U SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)C(=CC(=O)N2)C(=O)N3CCN(CC3C(=O)NCCC(F)(F)F)c4ccc(c(c4)Cl)Cl"                                                                                                                          
# 
_pdbx_chem_comp_identifier.comp_id           K9U 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{S})-4-(3,4-dichlorophenyl)-1-[(2-oxidanylidene-1~{H}-quinolin-4-yl)carbonyl]-~{N}-[3,3,3-tris(fluoranyl)propyl]piperazine-2-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
K9U "Create component" 2022-09-14 PDBJ 
K9U "Initial release"  2023-09-13 RCSB 
# 
