data_I4U
#

_chem_comp.id                                   I4U
_chem_comp.name                                 "4-isopropyl, uridine-5'-monophosphate"
_chem_comp.type                                 "RNA linking"
_chem_comp.pdbx_type                            ATOMN
_chem_comp.formula                              "C12 H19 N2 O9 P"
_chem_comp.mon_nstd_parent_comp_id              U
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2017-09-25
_chem_comp.pdbx_modified_date                   2019-04-29
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       366.261
_chem_comp.one_letter_code                      U
_chem_comp.three_letter_code                    I4U
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6EK0
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
I4U  "C1'"  C1   C  0  1  N  N  R  222.656  293.879  243.724   0.250   1.518   0.765  "C1'"  I4U   1  
I4U  C2     C2   C  0  1  N  N  N  224.774  295.264  243.579   1.892   0.065  -0.290  C2     I4U   2  
I4U  "C2'"  C3   C  0  1  N  N  R  221.742  294.430  242.638   0.096   2.468  -0.443  "C2'"  I4U   3  
I4U  "C3'"  C4   C  0  1  N  N  S  221.426  293.167  241.853  -1.385   2.314  -0.855  "C3'"  I4U   4  
I4U  C4     C5   C  0  1  N  N  N  226.800  294.265  242.992   3.963  -0.372   0.635  C4     I4U   5  
I4U  "C4'"  C6   C  0  1  N  N  R  221.328  292.126  242.932  -1.951   1.290   0.153  "C4'"  I4U   6  
I4U  C5     C7   C  0  1  N  N  N  226.164  293.054  242.873   3.651   0.462   1.724  C5     I4U   7  
I4U  "C5'"  C8   C  0  1  N  N  N  221.551  290.718  242.461  -2.955   0.363  -0.535  "C5'"  I4U   8  
I4U  C6     C9   C  0  1  N  N  N  224.813  292.973  243.112   2.440   1.072   1.760  C6     I4U   9  
I4U  N1     N1   N  0  1  N  N  N  224.102  294.041  243.437   1.561   0.865   0.740  N1     I4U  10  
I4U  N3     N2   N  0  1  N  N  N  226.087  295.340  243.332   3.076  -0.544  -0.335  N3     I4U  11  
I4U  O2     O1   O  0  1  N  N  N  224.177  296.304  243.891   1.093  -0.109  -1.195  O2     I4U  12  
I4U  "O2'"  O2   O  0  1  N  N  N  220.576  294.939  243.258   0.371   3.816  -0.059  "O2'"  I4U  13  
I4U  "O3'"  O3   O  0  1  N  N  N  220.269  293.234  241.055  -2.070   3.563  -0.738  "O3'"  I4U  14  
I4U  O4     O4   O  0  1  N  N  N  228.146  294.400  242.767   5.161  -0.995   0.577  O4     I4U  15  
I4U  "O4'"  O5   O  0  1  N  N  N  222.380  292.503  243.848  -0.801   0.541   0.603  "O4'"  I4U  16  
I4U  "O5'"  O6   O  0  1  N  N  N  222.904  290.536  242.094  -3.552  -0.499   0.436  "O5'"  I4U  17  
I4U  OP1    O7   O  0  1  N  N  N  222.544  288.421  240.866  -5.784  -0.962  -0.648  OP1    I4U  18  
I4U  OP2    O8   O  0  1  N  N  N  224.916  289.286  241.359  -3.996  -2.728  -0.886  OP2    I4U  19  
I4U  P      P1   P  0  1  N  N  N  223.502  289.102  241.791  -4.658  -1.608   0.063  P      I4U  20  
I4U  C41    C10  C  0  1  N  N  N  229.007  293.301  242.492   5.406  -1.826  -0.559  C41    I4U  21  
I4U  C42    C11  C  0  1  N  N  N  230.209  293.323  243.418   6.048  -0.993  -1.671  C42    I4U  22  
I4U  C43    C12  C  0  1  N  N  N  229.469  293.421  241.060   6.351  -2.963  -0.165  C43    I4U  23  
I4U  H1     H1   H  0  1  N  N  N  222.421  294.394  244.667   0.117   2.066   1.698  H1     I4U  24  
I4U  H2     H2   H  0  1  N  N  N  222.260  295.173  242.014   0.754   2.161  -1.256  H2     I4U  25  
I4U  H3     H3   H  0  1  N  N  N  222.296  292.930  241.223  -1.461   1.930  -1.872  H3     I4U  26  
I4U  H4     H4   H  0  1  N  N  N  220.347  292.198  243.425  -2.421   1.803   0.992  H4     I4U  27  
I4U  H5     H5   H  0  1  N  N  N  226.721  292.172  242.594   4.363   0.612   2.522  H5     I4U  28  
I4U  H6     H6   H  0  1  N  N  N  220.908  290.520  241.591  -3.730   0.959  -1.017  H6     I4U  29  
I4U  H7     H7   H  0  1  N  N  N  221.297  290.019  243.271  -2.440  -0.237  -1.285  H7     I4U  30  
I4U  H8     H8   H  0  1  N  N  N  224.320  292.015  243.033   2.178   1.716   2.585  H8     I4U  31  
I4U  H9     H9   H  0  1  N  N  N  220.793  295.727  243.743   0.289   4.455  -0.780  H9     I4U  32  
I4U  H10    H10  H  0  1  N  N  N  220.148  292.408  240.602  -1.716   4.261  -1.306  H10    I4U  33  
I4U  H12    H12  H  0  1  N  N  N  225.032  288.920  240.490  -3.250  -3.193  -0.483  H12    I4U  34  
I4U  H13    H13  H  0  1  N  N  N  228.470  292.350  242.621   4.464  -2.243  -0.915  H13    I4U  35  
I4U  H14    H14  H  0  1  N  N  N  229.871  293.235  244.461   6.990  -0.576  -1.315  H14    I4U  36  
I4U  H15    H15  H  0  1  N  N  N  230.873  292.480  243.176   6.235  -1.626  -2.538  H15    I4U  37  
I4U  H16    H16  H  0  1  N  N  N  230.755  294.269  243.288   5.375  -0.182  -1.952  H16    I4U  38  
I4U  H17    H17  H  0  1  N  N  N  230.138  292.582  240.819   5.894  -3.556   0.627  H17    I4U  39  
I4U  H18    H18  H  0  1  N  N  N  228.597  293.398  240.390   6.538  -3.597  -1.032  H18    I4U  40  
I4U  H19    H19  H  0  1  N  N  N  230.009  294.370  240.927   7.293  -2.546   0.191  H19    I4U  41  
I4U  OP3    OP3  O  0  1  N  N  N  223.571  288.407  243.230  -5.201  -2.299   1.412  OP3    I4U  42  
I4U  H11    H11  H  0  1  N  N  N  222.979  287.664  243.252  -5.872  -2.979   1.262  H11    I4U  43  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
I4U  OP1    P      DOUB  N  N   1  
I4U  "O3'"  "C3'"  SING  N  N   2  
I4U  C43    C41    SING  N  N   3  
I4U  OP2    P      SING  N  N   4  
I4U  P      "O5'"  SING  N  N   5  
I4U  "C3'"  "C2'"  SING  N  N   6  
I4U  "C3'"  "C4'"  SING  N  N   7  
I4U  "O5'"  "C5'"  SING  N  N   8  
I4U  "C5'"  "C4'"  SING  N  N   9  
I4U  C41    O4     SING  N  N  10  
I4U  C41    C42    SING  N  N  11  
I4U  "C2'"  "O2'"  SING  N  N  12  
I4U  "C2'"  "C1'"  SING  N  N  13  
I4U  O4     C4     SING  N  N  14  
I4U  C5     C4     SING  N  N  15  
I4U  C5     C6     DOUB  N  N  16  
I4U  "C4'"  "O4'"  SING  N  N  17  
I4U  C4     N3     DOUB  N  N  18  
I4U  C6     N1     SING  N  N  19  
I4U  N3     C2     SING  N  N  20  
I4U  N1     C2     SING  N  N  21  
I4U  N1     "C1'"  SING  N  N  22  
I4U  C2     O2     DOUB  N  N  23  
I4U  "C1'"  "O4'"  SING  N  N  24  
I4U  "C1'"  H1     SING  N  N  25  
I4U  "C2'"  H2     SING  N  N  26  
I4U  "C3'"  H3     SING  N  N  27  
I4U  "C4'"  H4     SING  N  N  28  
I4U  C5     H5     SING  N  N  29  
I4U  "C5'"  H6     SING  N  N  30  
I4U  "C5'"  H7     SING  N  N  31  
I4U  C6     H8     SING  N  N  32  
I4U  "O2'"  H9     SING  N  N  33  
I4U  "O3'"  H10    SING  N  N  34  
I4U  OP2    H12    SING  N  N  35  
I4U  C41    H13    SING  N  N  36  
I4U  C42    H14    SING  N  N  37  
I4U  C42    H15    SING  N  N  38  
I4U  C42    H16    SING  N  N  39  
I4U  C43    H17    SING  N  N  40  
I4U  C43    H18    SING  N  N  41  
I4U  C43    H19    SING  N  N  42  
I4U  P      OP3    SING  N  N  43  
I4U  OP3    H11    SING  N  N  44  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
I4U  InChI             InChI                 1.03   "InChI=1S/C12H19N2O9P/c1-6(2)22-8-3-4-14(12(17)13-8)11-10(16)9(15)7(23-11)5-21-24(18,19)20/h3-4,6-7,9-11,15-16H,5H2,1-2H3,(H2,18,19,20)/t7-,9-,10-,11-/m1/s1"  
I4U  InChIKey          InChI                 1.03   ATIBKNZWTGFNRC-QCNRFFRDSA-N  
I4U  SMILES_CANONICAL  CACTVS                3.385  "CC(C)OC1=NC(=O)N(C=C1)[C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2O"  
I4U  SMILES            CACTVS                3.385  "CC(C)OC1=NC(=O)N(C=C1)[CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2O"  
I4U  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "CC(C)OC1=NC(=O)N(C=C1)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O"  
I4U  SMILES            "OpenEye OEToolkits"  2.0.6  "CC(C)OC1=NC(=O)N(C=C1)C2C(C(C(O2)COP(=O)(O)O)O)O"  
#
_pdbx_chem_comp_identifier.comp_id          I4U
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.6
_pdbx_chem_comp_identifier.identifier       "[(2~{R},3~{S},4~{R},5~{R})-3,4-bis(oxidanyl)-5-(2-oxidanylidene-4-propan-2-yloxy-pyrimidin-1-yl)oxolan-2-yl]methyl dihydrogen phosphate"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
I4U  "Create component"        2017-09-25  EBI   
I4U  "Initial release"         2018-01-24  RCSB  
I4U  "Modify one letter code"  2019-04-29  EBI   
##
