data_I3U
# 
_chem_comp.id                                    I3U 
_chem_comp.name                                  "4-[(5-aminopentyl)(hydroxy)amino]-4-oxobutanoic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C9 H18 N2 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "N-(3-carboxypropanoyl)-N-hydroxycadaverine" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-01-10 
_chem_comp.pdbx_modified_date                    2022-07-01 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        218.250 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     I3U 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7TGM 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
I3U C02 C1  C 0 1 N N N 62.090 44.358 -41.356 5.724  -0.662 0.121  C02 I3U 1  
I3U C03 C2  C 0 1 N N N 63.156 45.275 -41.997 4.293  -0.626 -0.421 C03 I3U 2  
I3U C04 C3  C 0 1 N N N 63.603 44.697 -43.394 3.459  0.354  0.407  C04 I3U 3  
I3U C05 C4  C 0 1 N N N 64.554 43.462 -43.257 2.028  0.389  -0.135 C05 I3U 4  
I3U C06 C5  C 0 1 N N N 64.907 42.875 -44.637 1.194  1.369  0.693  C06 I3U 5  
I3U C09 C6  C 0 1 N N N 63.499 41.071 -45.825 -1.017 0.380  0.425  C09 I3U 6  
I3U C11 C7  C 0 1 N N N 63.144 39.566 -45.883 -2.426 0.415  -0.109 C11 I3U 7  
I3U C12 C8  C 0 1 N N N 61.983 39.447 -46.866 -3.164 -0.856 0.315  C12 I3U 8  
I3U C13 C9  C 0 1 N N N 61.536 37.990 -46.937 -4.573 -0.821 -0.219 C13 I3U 9  
I3U N01 N1  N 0 1 N N N 61.433 45.003 -40.216 6.525  -1.602 -0.673 N01 I3U 10 
I3U N07 N2  N 0 1 N N N 64.494 41.477 -44.794 -0.176 1.403  0.174  N07 I3U 11 
I3U O08 O1  O 0 1 N N N 65.014 40.461 -43.989 -0.616 2.510  -0.591 O08 I3U 12 
I3U O10 O2  O 0 1 N N N 62.964 41.832 -46.584 -0.640 -0.568 1.080  O10 I3U 13 
I3U O14 O3  O 0 1 N N N 62.282 37.084 -47.193 -4.948 0.124  -0.871 O14 I3U 14 
I3U H1  H1  H 0 1 N N N 61.330 44.112 -42.113 6.162  0.334  0.056  H1  I3U 15 
I3U H2  H2  H 0 1 N N N 62.576 43.434 -41.011 5.710  -0.985 1.162  H2  I3U 16 
I3U H3  H3  H 0 1 N N N 64.030 45.335 -41.332 4.307  -0.303 -1.461 H3  I3U 17 
I3U H4  H4  H 0 1 N N N 62.733 46.280 -42.138 3.855  -1.622 -0.355 H4  I3U 18 
I3U H5  H5  H 0 1 N N N 64.129 45.487 -43.950 3.445  0.030  1.448  H5  I3U 19 
I3U H6  H6  H 0 1 N N N 62.706 44.391 -43.952 3.897  1.349  0.342  H6  I3U 20 
I3U H7  H7  H 0 1 N N N 64.054 42.689 -42.656 2.042  0.713  -1.176 H7  I3U 21 
I3U H8  H8  H 0 1 N N N 65.480 43.776 -42.753 1.590  -0.607 -0.070 H8  I3U 22 
I3U H9  H9  H 0 1 N N N 65.997 42.935 -44.774 1.180  1.045  1.734  H9  I3U 23 
I3U H10 H10 H 0 1 N N N 64.407 43.476 -45.411 1.632  2.365  0.627  H10 I3U 24 
I3U H11 H11 H 0 1 N N N 62.842 39.206 -44.889 -2.944 1.287  0.291  H11 I3U 25 
I3U H12 H12 H 0 1 N N N 64.007 38.983 -46.238 -2.401 0.475  -1.197 H12 I3U 26 
I3U H13 H13 H 0 1 N N N 62.308 39.781 -47.862 -2.646 -1.727 -0.085 H13 I3U 27 
I3U H14 H14 H 0 1 N N N 61.145 40.073 -46.524 -3.189 -0.916 1.403  H14 I3U 28 
I3U H16 H16 H 0 1 N N N 60.752 44.382 -39.828 6.500  -1.361 -1.653 H16 I3U 29 
I3U H17 H17 H 0 1 N N N 62.116 45.225 -39.520 7.475  -1.644 -0.335 H17 I3U 30 
I3U H19 H19 H 0 1 N N N 65.634 40.831 -43.372 0.057  3.193  -0.718 H19 I3U 31 
I3U O1  O4  O 0 1 N Y N 60.128 37.726 -46.687 -5.411 -1.839 0.031  O1  I3U 32 
I3U H15 H15 H 0 1 N Y N 59.962 36.794 -46.764 -6.304 -1.772 -0.332 H15 I3U 33 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
I3U O14 C13 DOUB N N 1  
I3U C13 C12 SING N N 2  
I3U C12 C11 SING N N 3  
I3U O10 C09 DOUB N N 4  
I3U C11 C09 SING N N 5  
I3U C09 N07 SING N N 6  
I3U N07 C06 SING N N 7  
I3U N07 O08 SING N N 8  
I3U C06 C05 SING N N 9  
I3U C04 C05 SING N N 10 
I3U C04 C03 SING N N 11 
I3U C03 C02 SING N N 12 
I3U C02 N01 SING N N 13 
I3U C02 H1  SING N N 14 
I3U C02 H2  SING N N 15 
I3U C03 H3  SING N N 16 
I3U C03 H4  SING N N 17 
I3U C04 H5  SING N N 18 
I3U C04 H6  SING N N 19 
I3U C05 H7  SING N N 20 
I3U C05 H8  SING N N 21 
I3U C06 H9  SING N N 22 
I3U C06 H10 SING N N 23 
I3U C11 H11 SING N N 24 
I3U C11 H12 SING N N 25 
I3U C12 H13 SING N N 26 
I3U C12 H14 SING N N 27 
I3U N01 H16 SING N N 28 
I3U N01 H17 SING N N 29 
I3U O08 H19 SING N N 30 
I3U C13 O1  SING N N 31 
I3U O1  H15 SING N N 32 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
I3U SMILES           ACDLabs              12.01 "NCCCCCN(O)C(=O)CCC(=O)O"                                                         
I3U InChI            InChI                1.03  "InChI=1S/C9H18N2O4/c10-6-2-1-3-7-11(15)8(12)4-5-9(13)14/h15H,1-7,10H2,(H,13,14)" 
I3U InChIKey         InChI                1.03  VUXMGAKZQBQIAH-UHFFFAOYSA-N                                                       
I3U SMILES_CANONICAL CACTVS               3.385 "NCCCCCN(O)C(=O)CCC(O)=O"                                                         
I3U SMILES           CACTVS               3.385 "NCCCCCN(O)C(=O)CCC(O)=O"                                                         
I3U SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C(CCN)CCN(C(=O)CCC(=O)O)O"                                                       
I3U SMILES           "OpenEye OEToolkits" 2.0.7 "C(CCN)CCN(C(=O)CCC(=O)O)O"                                                       
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
I3U "SYSTEMATIC NAME" ACDLabs              12.01 "4-[(5-aminopentyl)(hydroxy)amino]-4-oxobutanoic acid"            
I3U "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "4-[5-azanylpentyl(oxidanyl)amino]-4-oxidanylidene-butanoic acid" 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      I3U 
_pdbx_chem_comp_synonyms.name         "N-(3-carboxypropanoyl)-N-hydroxycadaverine" 
_pdbx_chem_comp_synonyms.provenance   ? 
_pdbx_chem_comp_synonyms.type         ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
I3U "Create component" 2022-01-10 RCSB 
I3U "Initial release"  2022-07-06 RCSB 
# 
