data_GYU
#

_chem_comp.id                                   GYU
_chem_comp.name                                 "2-acetamido-2-deoxy-1-O-(propylcarbamoyl)-alpha-D-glucopyranose"
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C12 H22 N2 O7"
_chem_comp.mon_nstd_parent_comp_id              PA1
_chem_comp.pdbx_synonyms                        
;2-(ACETYLAMINO)-2-DEOXY-1-O-(PROPYLCARBAMOYL)-ALPHA-D-GLUCOPYRANOSE;
N-acetyl-1-O-(propylcarbamoyl)-alpha-D-glucosamine; 2-acetamido-2-deoxy-1-O-(propylcarbamoyl)-alpha-D-glucose;
2-acetamido-2-deoxy-1-O-(propylcarbamoyl)-D-glucose; 2-acetamido-2-deoxy-1-O-(propylcarbamoyl)-glucose
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2007-03-21
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  ?
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       306.312
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    GYU
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       "OpenEye OEToolkits"
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       2UWG
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  GYU  "2-(ACETYLAMINO)-2-DEOXY-1-O-(PROPYLCARBAMOYL)-ALPHA-D-GLUCOPYRANOSE"  PDB  ?  
2  GYU  "N-acetyl-1-O-(propylcarbamoyl)-alpha-D-glucosamine"                   PDB  ?  
3  GYU  "2-acetamido-2-deoxy-1-O-(propylcarbamoyl)-alpha-D-glucose"            PDB  ?  
4  GYU  "2-acetamido-2-deoxy-1-O-(propylcarbamoyl)-D-glucose"                  PDB  ?  
5  GYU  "2-acetamido-2-deoxy-1-O-(propylcarbamoyl)-glucose"                    PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
GYU  C1A   C1    C  0  1  N  N  N   -6.195  42.927  5.040   1.383   1.915   3.274  C1A   GYU   1  
GYU  O1A   O1A   O  0  1  N  N  N   -6.582  44.075  5.294   2.317   1.617   4.011  O1A   GYU   2  
GYU  O1    O1B   O  0  1  N  N  N   -7.107  41.881  5.000   1.289   1.548   1.958  O1    GYU   3  
GYU  C12   C12   C  0  1  N  N  N   -3.862  43.579  4.786   0.073   3.202   4.956  C12   GYU   4  
GYU  C13   C13   C  0  1  N  N  N   -3.139  43.611  6.120   0.664   4.598   5.110  C13   GYU   5  
GYU  C14   C14   C  0  1  N  N  N   -2.448  42.292  6.459   0.044   5.608   4.156  C14   GYU   6  
GYU  C2    C5    C  0  1  N  N  N   -8.441  40.526  6.363   2.137   0.436  -0.031  C2    GYU   7  
GYU  N2    N5    N  0  1  N  N  N   -7.194  40.018  6.862   1.961   1.638  -0.813  N2    GYU   8  
GYU  C10   C10   C  0  1  N  N  N   -7.033  39.704  8.181   3.014   2.331  -1.384  C10   GYU   9  
GYU  O10   O10   O  0  1  N  N  N   -7.955  39.824  8.981   4.201   2.037  -1.311  O10   GYU  10  
GYU  C11   C11   C  0  1  N  N  N   -5.659  39.178  8.598   2.600   3.542  -2.151  C11   GYU  11  
GYU  C3    C6    C  0  1  N  N  N   -8.812  39.671  5.137   0.949  -0.515  -0.197  C3    GYU  12  
GYU  O3    O6    O  0  1  N  N  N   -9.055  38.315  5.610   0.906  -0.961  -1.554  O3    GYU  13  
GYU  C4    C7    C  0  1  N  N  N  -10.028  40.220  4.471   1.107  -1.734   0.716  C4    GYU  14  
GYU  O4    O7    O  0  1  N  N  N  -10.251  39.435  3.278  -0.109  -2.477   0.674  O4    GYU  15  
GYU  C1    C15   C  0  1  N  N  N   -8.280  41.985  5.853   2.368   0.767   1.447  C1    GYU  16  
GYU  O5    O8    O  0  1  N  N  N   -9.436  42.442  5.255   2.557  -0.438   2.193  O5    GYU  17  
GYU  NAC   NAC   N  0  1  N  N  N   -4.960  42.563  4.811   0.280   2.660   3.632  NAC   GYU  18  
GYU  C5    C8    C  0  1  N  N  N   -9.832  41.701  4.066   1.425  -1.314   2.156  C5    GYU  19  
GYU  C6    C9    C  0  1  N  N  N  -11.154  42.279  3.648   1.759  -2.511   3.042  C6    GYU  20  
GYU  O6    O9    O  0  1  N  N  N  -10.981  43.653  3.195   2.050  -2.040   4.344  O6    GYU  21  
GYU  HAC   HAC   H  0  1  N  N  N   -4.748  41.599  4.651  -0.428   2.839   2.926  HAC   GYU  22  
GYU  H1    H15   H  0  1  N  N  N   -8.128  42.748  6.631   3.277   1.368   1.559  H1    GYU  23  
GYU  H121  H121  H  0  0  N  N  N   -4.293  44.571  4.585   0.550   2.513   5.661  H121  GYU  24  
GYU  H122  H122  H  0  0  N  N  N   -3.144  43.309  3.997  -1.003   3.202   5.154  H122  GYU  25  
GYU  H131  H131  H  0  0  N  N  N   -2.374  44.401  6.079   0.499   4.940   6.139  H131  GYU  26  
GYU  H132  H132  H  0  0  N  N  N   -3.892  43.798  6.899   1.748   4.568   4.948  H132  GYU  27  
GYU  H141  H141  H  0  0  N  N  N   -2.282  41.717  5.536  -1.040   5.670   4.300  H141  GYU  28  
GYU  H142  H142  H  0  0  N  N  N   -1.481  42.498  6.941   0.465   6.603   4.334  H142  GYU  29  
GYU  H143  H143  H  0  0  N  N  N   -3.083  41.711  7.144   0.239   5.343   3.112  H143  GYU  30  
GYU  H2    H5    H  0  1  N  N  N   -9.195  40.495  7.164   3.032  -0.052  -0.435  H2    GYU  31  
GYU  HN21  HA    H  0  0  N  N  N   -6.428  39.892  6.231   1.019   1.992  -0.952  HN21  GYU  32  
GYU  H3    H6    H  0  1  N  N  N   -7.998  39.679  4.397  -0.003  -0.005  -0.003  H3    GYU  33  
GYU  H111  H111  H  0  0  N  N  N   -5.028  39.052  7.706   3.057   4.465  -1.758  H111  GYU  34  
GYU  H112  H112  H  0  0  N  N  N   -5.185  39.895  9.284   2.905   3.494  -3.209  H112  GYU  35  
GYU  H113  H113  H  0  0  N  N  N   -5.776  38.208  9.104   1.517   3.741  -2.170  H113  GYU  36  
GYU  HO3   HB    H  0  1  N  Y  N   -9.108  37.725  4.867   1.705  -1.490  -1.693  HO3   GYU  37  
GYU  H4    H7    H  0  1  N  N  N  -10.881  40.171  5.164   1.900  -2.383   0.324  H4    GYU  38  
GYU  HO4   HC    H  0  1  N  Y  N  -10.300  40.011  2.524  -0.383  -2.504  -0.255  HO4   GYU  39  
GYU  H5    H8    H  0  1  N  N  N   -9.089  41.765  3.257   0.560  -0.813   2.608  H5    GYU  40  
GYU  H61   H9C1  H  0  1  N  N  N  -11.570  41.676  2.827   2.628  -3.035   2.645  H61   GYU  41  
GYU  H62   H9C2  H  0  1  N  N  N  -11.840  42.268  4.508   0.907  -3.190   3.085  H62   GYU  42  
GYU  HO6   H9    H  0  1  N  Y  N  -10.943  44.232  3.947   2.976  -2.268   4.531  HO6   GYU  43  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
GYU  C1A  O1A   DOUB  N  N   1  
GYU  C1A  O1    SING  N  N   2  
GYU  C12  C13   SING  N  N   3  
GYU  C13  C14   SING  N  N   4  
GYU  C2   N2    SING  N  N   5  
GYU  N2   C10   SING  N  N   6  
GYU  C10  O10   DOUB  N  N   7  
GYU  C10  C11   SING  N  N   8  
GYU  C2   C3    SING  N  N   9  
GYU  C3   O3    SING  N  N  10  
GYU  C3   C4    SING  N  N  11  
GYU  C4   O4    SING  N  N  12  
GYU  O1   C1    SING  N  N  13  
GYU  C2   C1    SING  N  N  14  
GYU  C1   O5    SING  N  N  15  
GYU  C1A  NAC   SING  N  N  16  
GYU  C12  NAC   SING  N  N  17  
GYU  C4   C5    SING  N  N  18  
GYU  O5   C5    SING  N  N  19  
GYU  C5   C6    SING  N  N  20  
GYU  C6   O6    SING  N  N  21  
GYU  NAC  HAC   SING  N  N  22  
GYU  C1   H1    SING  N  N  23  
GYU  C12  H121  SING  N  N  24  
GYU  C12  H122  SING  N  N  25  
GYU  C13  H131  SING  N  N  26  
GYU  C13  H132  SING  N  N  27  
GYU  C14  H141  SING  N  N  28  
GYU  C14  H142  SING  N  N  29  
GYU  C14  H143  SING  N  N  30  
GYU  C2   H2    SING  N  N  31  
GYU  N2   HN21  SING  N  N  32  
GYU  C3   H3    SING  N  N  33  
GYU  C11  H111  SING  N  N  34  
GYU  C11  H112  SING  N  N  35  
GYU  C11  H113  SING  N  N  36  
GYU  O3   HO3   SING  N  N  37  
GYU  C4   H4    SING  N  N  38  
GYU  O4   HO4   SING  N  N  39  
GYU  C5   H5    SING  N  N  40  
GYU  C6   H61   SING  N  N  41  
GYU  C6   H62   SING  N  N  42  
GYU  O6   HO6   SING  N  N  43  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
GYU  SMILES            ACDLabs               10.04  "O=C(OC1OC(C(O)C(O)C1NC(=O)C)CO)NCCC"  
GYU  SMILES_CANONICAL  CACTVS                3.341  "CCCNC(=O)O[C@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@H]1NC(C)=O"  
GYU  SMILES            CACTVS                3.341  "CCCNC(=O)O[CH]1O[CH](CO)[CH](O)[CH](O)[CH]1NC(C)=O"  
GYU  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "CCCNC(=O)O[C@@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O)O)NC(=O)C"  
GYU  SMILES            "OpenEye OEToolkits"  1.5.0  "CCCNC(=O)OC1C(C(C(C(O1)CO)O)O)NC(=O)C"  
GYU  InChI             InChI                 1.03   "InChI=1S/C12H22N2O7/c1-3-4-13-12(19)21-11-8(14-6(2)16)10(18)9(17)7(5-15)20-11/h7-11,15,17-18H,3-5H2,1-2H3,(H,13,19)(H,14,16)/t7-,8-,9-,10-,11-/m1/s1"  
GYU  InChIKey          InChI                 1.03   WEAGJSCGQDTQRE-ISUQUUIWSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
GYU  "SYSTEMATIC NAME"  ACDLabs               10.04  "2-(acetylamino)-2-deoxy-1-O-(propylcarbamoyl)-alpha-D-glucopyranose"  
GYU  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "[(2R,3R,4R,5S,6R)-3-acetamido-4,5-dihydroxy-6-(hydroxymethyl)oxan-2-yl] N-propylcarbamate"  
#
_pdbx_chem_comp_related.comp_id            GYU
_pdbx_chem_comp_related.related_comp_id    PA1
_pdbx_chem_comp_related.relationship_type  "Carbohydrate core"
_pdbx_chem_comp_related.details            ?
#   #
loop_
_pdbx_chem_comp_atom_related.ordinal
_pdbx_chem_comp_atom_related.comp_id
_pdbx_chem_comp_atom_related.atom_id
_pdbx_chem_comp_atom_related.related_comp_id
_pdbx_chem_comp_atom_related.related_atom_id
_pdbx_chem_comp_atom_related.related_type
 1  GYU  C1    PA1  C1    "Carbohydrate core"  
 2  GYU  C2    PA1  C2    "Carbohydrate core"  
 3  GYU  C3    PA1  C3    "Carbohydrate core"  
 4  GYU  C4    PA1  C4    "Carbohydrate core"  
 5  GYU  C5    PA1  C5    "Carbohydrate core"  
 6  GYU  C6    PA1  C6    "Carbohydrate core"  
 7  GYU  N2    PA1  N2    "Carbohydrate core"  
 8  GYU  O1    PA1  O1    "Carbohydrate core"  
 9  GYU  O3    PA1  O3    "Carbohydrate core"  
10  GYU  O4    PA1  O4    "Carbohydrate core"  
11  GYU  O5    PA1  O5    "Carbohydrate core"  
12  GYU  O6    PA1  O6    "Carbohydrate core"  
13  GYU  H1    PA1  H1    "Carbohydrate core"  
14  GYU  H2    PA1  H2    "Carbohydrate core"  
15  GYU  H3    PA1  H3    "Carbohydrate core"  
16  GYU  H4    PA1  H4    "Carbohydrate core"  
17  GYU  H5    PA1  H5    "Carbohydrate core"  
18  GYU  HO6   PA1  HO6   "Carbohydrate core"  
19  GYU  H61   PA1  H61   "Carbohydrate core"  
20  GYU  H62   PA1  H62   "Carbohydrate core"  
21  GYU  HN21  PA1  HN21  "Carbohydrate core"  
22  GYU  HO3   PA1  HO3   "Carbohydrate core"  
23  GYU  HO4   PA1  HO4   "Carbohydrate core"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
GYU  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
GYU  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
GYU  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
GYU  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
GYU  "Create component"          2007-03-21  EBI   
GYU  "Modify descriptor"         2011-06-04  RCSB  
GYU  "Other modification"        2020-07-03  RCSB  
GYU  "Modify parent residue"     2020-07-17  RCSB  
GYU  "Modify name"               2020-07-17  RCSB  
GYU  "Modify synonyms"           2020-07-17  RCSB  
GYU  "Modify internal type"      2020-07-17  RCSB  
GYU  "Modify linking type"       2020-07-17  RCSB  
GYU  "Modify atom id"            2020-07-17  RCSB  
GYU  "Modify component atom id"  2020-07-17  RCSB  
GYU  "Modify leaving atom flag"  2020-07-17  RCSB  
##
