data_F6U
#

_chem_comp.id                                   F6U
_chem_comp.name                                 "[(2R,3R)-3-[2-(6-aminopurin-9-yl)ethanoylamino]-4-oxidanyl-butan-2-yl] dihydrogen phosphate"
_chem_comp.type                                 "DNA linking"
_chem_comp.pdbx_type                            ATOMN
_chem_comp.formula                              "C11 H17 N6 O6 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-04-03
_chem_comp.pdbx_modified_date                   2020-11-20
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       360.263
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    F6U
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7BPF
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
F6U  N1      N1   N  0  1  Y  N  N  -17.720  -23.388  11.177   5.668  -1.877   0.112  N1     F6U   1  
F6U  C2      C1   C  0  1  Y  N  N  -17.966  -24.660  10.466   4.484  -2.304  -0.288  C2     F6U   2  
F6U  N3      N2   N  0  1  Y  N  N  -18.630  -24.412   9.200   3.500  -1.483  -0.586  N3     F6U   3  
F6U  C4      C2   C  0  1  Y  N  N  -18.964  -23.177   8.784   3.665  -0.167  -0.494  C4     F6U   4  
F6U  OP1     O1   O  0  1  N  N  N  -25.843  -25.215   2.497  -4.958  -1.343   0.935  OP1    F6U   5  
F6U  P       P1   P  0  1  N  N  N  -24.398  -25.021   2.226  -5.036  -0.431  -0.228  P      F6U   6  
F6U  OP2     O2   O  0  1  N  N  N  -23.809  -25.993   1.278  -6.218   0.637   0.006  OP2    F6U   7  
F6U  "O3'"   O3   O  0  1  N  N  N  -23.542  -25.104   3.592  -3.636   0.345  -0.397  "O3'"  F6U   8  
F6U  "C3'"   C3   C  0  1  N  N  R  -24.191  -24.834   4.834  -3.037   1.106   0.654  "C3'"  F6U   9  
F6U  C3A     C4   C  0  1  N  N  N  -24.299  -23.319   5.036  -2.883   2.561   0.206  C3A    F6U  10  
F6U  "C2'"   C5   C  0  1  N  N  R  -23.398  -25.470   5.998  -1.660   0.525   0.983  "C2'"  F6U  11  
F6U  "C1'"   C6   C  0  1  N  N  N  -23.314  -26.993   5.853  -1.800  -0.962   1.311  "C1'"  F6U  12  
F6U  "O1'"   O4   O  0  1  N  N  N  -24.632  -27.602   5.960  -2.456  -1.629   0.230  "O1'"  F6U  13  
F6U  "N2'"   N3   N  0  1  N  N  N  -22.008  -25.019   5.959  -0.772   0.691  -0.170  "N2'"  F6U  14  
F6U  C2A     C7   C  0  1  N  N  N  -21.493  -24.174   6.855   0.563   0.737   0.009  C2A    F6U  15  
F6U  O2A     O5   O  0  1  N  N  N  -22.143  -23.687   7.772   1.029   0.643   1.125  O2A    F6U  16  
F6U  C2B     C8   C  0  1  N  N  N  -20.025  -23.798   6.621   1.477   0.907  -1.177  C2B    F6U  17  
F6U  N9      N4   N  0  1  Y  N  N  -19.571  -22.797   7.659   2.869   0.927  -0.722  N9     F6U  18  
F6U  C8      C9   C  0  1  Y  N  N  -19.700  -21.483   7.708   3.612   2.037  -0.447  C8     F6U  19  
F6U  N7      N5   N  0  1  Y  N  N  -19.182  -21.024   8.845   4.806   1.689  -0.067  N7     F6U  20  
F6U  C5      C10  C  0  1  Y  N  N  -18.712  -22.084   9.514   4.906   0.338  -0.073  C5     F6U  21  
F6U  C6      C11  C  0  1  Y  N  N  -18.076  -22.198  10.682   5.926  -0.579   0.234  C6     F6U  22  
F6U  N6      N6   N  0  1  N  N  N  -17.842  -21.073  11.344   7.170  -0.141   0.653  N6     F6U  23  
F6U  H1      H1   H  0  1  N  N  N  -17.690  -25.636  10.836   4.317  -3.368  -0.374  H1     F6U  24  
F6U  HOP2    H3   H  0  0  N  N  N  -24.479  -26.602   0.990  -6.327   1.268  -0.719  H3     F6U  25  
F6U  H4      H4   H  0  1  N  N  N  -25.205  -25.261   4.830  -3.671   1.064   1.540  H4     F6U  26  
F6U  H5      H5   H  0  1  N  N  N  -24.799  -23.111   5.993  -2.249   2.603  -0.680  H5     F6U  27  
F6U  H6      H6   H  0  1  N  N  N  -23.291  -22.878   5.045  -3.864   2.975  -0.029  H6     F6U  28  
F6U  H7      H7   H  0  1  N  N  N  -24.884  -22.880   4.214  -2.426   3.142   1.007  H7     F6U  29  
F6U  H8      H8   H  0  1  N  N  N  -23.870  -25.209   6.957  -1.241   1.049   1.843  H8     F6U  30  
F6U  H9      H9   H  0  1  N  N  N  -22.667  -27.395   6.647  -0.811  -1.396   1.458  H9     F6U  31  
F6U  H10     H10  H  0  1  N  N  N  -22.884  -27.237   4.871  -2.388  -1.081   2.221  H10    F6U  32  
F6U  H11     H11  H  0  1  N  Y  N  -24.554  -28.544   5.867  -2.578  -2.578   0.369  H11    F6U  33  
F6U  H12     H12  H  0  1  N  N  N  -21.416  -25.359   5.228  -1.145   0.766  -1.062  H12    F6U  34  
F6U  H13     H13  H  0  1  N  N  N  -19.403  -24.702   6.691   1.333   0.077  -1.869  H13    F6U  35  
F6U  H14     H14  H  0  1  N  N  N  -19.918  -23.356   5.619   1.246   1.845  -1.683  H14    F6U  36  
F6U  H15     H15  H  0  1  N  N  N  -20.156  -20.874   6.942   3.260   3.055  -0.533  H15    F6U  37  
F6U  H16     H16  H  0  1  N  N  N  -17.386  -21.283  12.209   7.346   0.809   0.738  H16    F6U  38  
F6U  H17     H17  H  0  1  N  N  N  -17.255  -20.479  10.794   7.866  -0.784   0.862  H17    F6U  39  
F6U  OP3     OP4  O  0  1  N  Y  N  -23.699  -23.696   2.179  -5.340  -1.285  -1.559  OP4    F6U  40  
F6U  HOP3    H2   H  0  0  N  Y  N  -24.324  -23.001   2.349  -6.170  -1.779  -1.528  H2     F6U  41  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
F6U  OP2    P       SING  N  N   1  
F6U  P      OP1     DOUB  N  N   2  
F6U  P      "O3'"   SING  N  N   3  
F6U  "O3'"  "C3'"   SING  N  N   4  
F6U  "C3'"  C3A     SING  N  N   5  
F6U  "C3'"  "C2'"   SING  N  N   6  
F6U  "C1'"  "O1'"   SING  N  N   7  
F6U  "C1'"  "C2'"   SING  N  N   8  
F6U  "N2'"  "C2'"   SING  N  N   9  
F6U  "N2'"  C2A     SING  N  N  10  
F6U  C2B    C2A     SING  N  N  11  
F6U  C2B    N9      SING  N  N  12  
F6U  C2A    O2A     DOUB  N  N  13  
F6U  N9     C8      SING  Y  N  14  
F6U  N9     C4      SING  Y  N  15  
F6U  C8     N7      DOUB  Y  N  16  
F6U  C4     N3      SING  Y  N  17  
F6U  C4     C5      DOUB  Y  N  18  
F6U  N7     C5      SING  Y  N  19  
F6U  N3     C2      DOUB  Y  N  20  
F6U  C5     C6      SING  Y  N  21  
F6U  C2     N1      SING  Y  N  22  
F6U  C6     N1      DOUB  Y  N  23  
F6U  C6     N6      SING  N  N  24  
F6U  C2     H1      SING  N  N  25  
F6U  OP2    HOP2    SING  N  N  26  
F6U  "C3'"  H4      SING  N  N  27  
F6U  C3A    H5      SING  N  N  28  
F6U  C3A    H6      SING  N  N  29  
F6U  C3A    H7      SING  N  N  30  
F6U  "C2'"  H8      SING  N  N  31  
F6U  "C1'"  H9      SING  N  N  32  
F6U  "C1'"  H10     SING  N  N  33  
F6U  "O1'"  H11     SING  N  N  34  
F6U  "N2'"  H12     SING  N  N  35  
F6U  C2B    H13     SING  N  N  36  
F6U  C2B    H14     SING  N  N  37  
F6U  C8     H15     SING  N  N  38  
F6U  N6     H16     SING  N  N  39  
F6U  N6     H17     SING  N  N  40  
F6U  P      OP3     SING  N  N  41  
F6U  OP3    HOP3    SING  N  N  42  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
F6U  InChI             InChI                 1.03   "InChI=1S/C11H17N6O6P/c1-6(23-24(20,21)22)7(3-18)16-8(19)2-17-5-15-9-10(12)13-4-14-11(9)17/h4-7,18H,2-3H2,1H3,(H,16,19)(H2,12,13,14)(H2,20,21,22)/t6-,7-/m1/s1"  
F6U  InChIKey          InChI                 1.03   USXONNDLXUHCOD-RNFRBKRXSA-N  
F6U  SMILES_CANONICAL  CACTVS                3.385  "C[C@@H](O[P](O)(O)=O)[C@@H](CO)NC(=O)Cn1cnc2c(N)ncnc12"  
F6U  SMILES            CACTVS                3.385  "C[CH](O[P](O)(O)=O)[CH](CO)NC(=O)Cn1cnc2c(N)ncnc12"  
F6U  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C[C@H]([C@@H](CO)NC(=O)Cn1cnc2c1ncnc2N)OP(=O)(O)O"  
F6U  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(C(CO)NC(=O)Cn1cnc2c1ncnc2N)OP(=O)(O)O"  
#
_pdbx_chem_comp_identifier.comp_id          F6U
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "[(2~{R},3~{R})-3-[2-(6-aminopurin-9-yl)ethanoylamino]-4-oxidanyl-butan-2-yl] dihydrogen phosphate"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
F6U  "Create component"          2020-04-03  PDBJ  
F6U  "Modify internal type"      2020-11-04  PDBJ  
F6U  "Modify linking type"       2020-11-04  PDBJ  
F6U  "Modify leaving atom flag"  2020-11-04  PDBJ  
F6U  "Modify linking type"       2020-11-18  PDBJ  
F6U  "Initial release"           2020-11-25  RCSB  
##
