data_EDU
# 
_chem_comp.id                                    EDU 
_chem_comp.name                                  "2'-deoxy-5-ethynyluridine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C11 H12 N2 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2014-02-12 
_chem_comp.pdbx_modified_date                    2014-08-08 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        252.223 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     EDU 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4OQN 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
EDU O01 O01 O 0 1 N N N 50.148 23.437 53.216 -4.072 -1.243 2.012  O01 EDU 1  
EDU C03 C03 C 0 1 N N N 50.638 24.740 52.945 -3.928 -0.914 0.629  C03 EDU 2  
EDU C06 C06 C 0 1 N N R 50.156 25.740 53.999 -2.951 0.254  0.481  C06 EDU 3  
EDU O08 O08 O 0 1 N N N 48.827 26.154 53.623 -1.609 -0.170 0.806  O08 EDU 4  
EDU C09 C09 C 0 1 N N S 50.049 25.182 55.423 -2.875 0.708  -0.994 C09 EDU 5  
EDU O10 O10 O 0 1 N N N 50.312 26.247 56.320 -3.707 1.849  -1.209 O10 EDU 6  
EDU C13 C13 C 0 1 N N N 48.591 24.777 55.562 -1.388 1.075  -1.198 C13 EDU 7  
EDU C16 C16 C 0 1 N N R 47.897 25.805 54.676 -0.741 0.799  0.178  C16 EDU 8  
EDU N18 N18 N 0 1 N N N 46.633 25.431 54.032 0.604  0.245  0.007  N18 EDU 9  
EDU C19 C19 C 0 1 N N N 45.526 26.142 54.448 0.755  -0.930 -0.625 C19 EDU 10 
EDU O20 O20 O 0 1 N N N 45.556 26.991 55.341 -0.231 -1.508 -1.040 O20 EDU 11 
EDU N21 N21 N 0 1 N N N 44.356 25.815 53.812 1.965  -1.486 -0.811 N21 EDU 12 
EDU C23 C23 C 0 1 N N N 44.184 24.888 52.808 3.076  -0.867 -0.360 C23 EDU 13 
EDU O24 O24 O 0 1 N N N 43.089 24.665 52.286 4.175  -1.365 -0.526 O24 EDU 14 
EDU C25 C25 C 0 1 N N N 45.406 24.169 52.400 2.933  0.421  0.335  C25 EDU 15 
EDU C26 C26 C 0 1 N N N 46.549 24.484 53.030 1.678  0.937  0.488  C26 EDU 16 
EDU C28 C28 C 0 1 N N N 45.336 23.188 51.362 4.080  1.118  0.832  C28 EDU 17 
EDU C29 C29 C 0 1 N N N 45.268 22.362 50.485 5.021  1.690  1.240  C29 EDU 18 
EDU H1  H1  H 0 1 N N N 50.460 22.836 52.550 -4.678 -1.976 2.181  H1  EDU 19 
EDU H2  H2  H 0 1 N N N 51.738 24.718 52.947 -3.545 -1.780 0.088  H2  EDU 20 
EDU H3  H3  H 0 1 N N N 50.280 25.060 51.956 -4.898 -0.631 0.220  H3  EDU 21 
EDU H4  H4  H 0 1 N N N 50.835 26.606 54.006 -3.253 1.084  1.119  H4  EDU 22 
EDU H5  H5  H 0 1 N N N 50.720 24.322 55.566 -3.162 -0.106 -1.659 H5  EDU 23 
EDU H6  H6  H 0 1 N N N 50.253 25.931 57.214 -3.697 2.177  -2.119 H6  EDU 24 
EDU H7  H7  H 0 1 N N N 48.252 24.853 56.606 -0.940 0.443  -1.964 H7  EDU 25 
EDU H8  H8  H 0 1 N N N 48.423 23.754 55.196 -1.288 2.127  -1.465 H8  EDU 26 
EDU H9  H9  H 0 1 N N N 47.716 26.700 55.290 -0.703 1.714  0.769  H9  EDU 27 
EDU H10 H10 H 0 1 N N N 43.536 26.304 54.110 2.039  -2.337 -1.271 H10 EDU 28 
EDU H11 H11 H 0 1 N N N 47.452 23.969 52.737 1.535  1.881  0.993  H11 EDU 29 
EDU H12 H12 H 0 1 N N N 45.208 21.636 49.715 5.862  2.202  1.605  H12 EDU 30 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
EDU C29 C28 TRIP N N 1  
EDU C28 C25 SING N N 2  
EDU O24 C23 DOUB N N 3  
EDU C25 C23 SING N N 4  
EDU C25 C26 DOUB N N 5  
EDU C23 N21 SING N N 6  
EDU C03 O01 SING N N 7  
EDU C03 C06 SING N N 8  
EDU C26 N18 SING N N 9  
EDU O08 C06 SING N N 10 
EDU O08 C16 SING N N 11 
EDU N21 C19 SING N N 12 
EDU C06 C09 SING N N 13 
EDU N18 C19 SING N N 14 
EDU N18 C16 SING N N 15 
EDU C19 O20 DOUB N N 16 
EDU C16 C13 SING N N 17 
EDU C09 C13 SING N N 18 
EDU C09 O10 SING N N 19 
EDU O01 H1  SING N N 20 
EDU C03 H2  SING N N 21 
EDU C03 H3  SING N N 22 
EDU C06 H4  SING N N 23 
EDU C09 H5  SING N N 24 
EDU O10 H6  SING N N 25 
EDU C13 H7  SING N N 26 
EDU C13 H8  SING N N 27 
EDU C16 H9  SING N N 28 
EDU N21 H10 SING N N 29 
EDU C26 H11 SING N N 30 
EDU C29 H12 SING N N 31 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
EDU SMILES           ACDLabs              12.01 "O=C1NC(=O)N(C=C1C#C)C2OC(C(O)C2)CO"                                                                                       
EDU InChI            InChI                1.03  "InChI=1S/C11H12N2O5/c1-2-6-4-13(11(17)12-10(6)16)9-3-7(15)8(5-14)18-9/h1,4,7-9,14-15H,3,5H2,(H,12,16,17)/t7-,8+,9+/m0/s1" 
EDU InChIKey         InChI                1.03  CDEURGJCGCHYFH-DJLDLDEBSA-N                                                                                                
EDU SMILES_CANONICAL CACTVS               3.385 "OC[C@H]1O[C@H](C[C@@H]1O)N2C=C(C#C)C(=O)NC2=O"                                                                            
EDU SMILES           CACTVS               3.385 "OC[CH]1O[CH](C[CH]1O)N2C=C(C#C)C(=O)NC2=O"                                                                                
EDU SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C#CC1=CN(C(=O)NC1=O)[C@H]2C[C@@H]([C@H](O2)CO)O"                                                                          
EDU SMILES           "OpenEye OEToolkits" 1.7.6 "C#CC1=CN(C(=O)NC1=O)C2CC(C(O2)CO)O"                                                                                       
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
EDU "SYSTEMATIC NAME" ACDLabs              12.01 "2'-deoxy-5-ethynyluridine"                                                             
EDU "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "5-ethynyl-1-[(2R,4S,5R)-5-(hydroxymethyl)-4-oxidanyl-oxolan-2-yl]pyrimidine-2,4-dione" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
EDU "Create component" 2014-02-12 RCSB 
EDU "Initial release"  2014-08-13 RCSB 
# 
