data_BDU
# 
_chem_comp.id                                    BDU 
_chem_comp.name                                  "ME-A-9-N-(BIPHENYL-4-CARBONYL)-AMINO-9-DEOXY-NEU5AC" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H30 N2 O9" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2003-02-14 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        502.514 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     BDU 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1ODA 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
BDU CX1  CX1  C 0 1 N N N 62.620 39.581 34.073 1.103  0.924  -0.152 CX1  BDU 1  
BDU O1A  O1A  O 0 1 N N N 61.852 40.155 34.880 1.806  -0.076 -0.129 O1A  BDU 2  
BDU O1B  O1B  O 0 1 N N N 62.624 39.790 32.825 -0.053 1.029  -0.852 O1B  BDU 3  
BDU CX2  CX2  C 0 1 N N R 63.543 38.511 34.635 1.397  2.203  0.584  CX2  BDU 4  
BDU OX2  OX2  O 0 1 N N N 64.537 39.245 35.315 1.381  3.204  -0.434 OX2  BDU 5  
BDU CO2  CO2  C 0 1 N N N ?      ?      ?      2.362  2.944  -1.424 CO2  BDU 6  
BDU CX3  CX3  C 0 1 N N N 62.883 37.573 35.630 0.290  2.556  1.574  CX3  BDU 7  
BDU CX4  CX4  C 0 1 N N S 61.967 36.630 34.834 0.313  1.659  2.807  CX4  BDU 8  
BDU OX4  OX4  O 0 1 N N N 61.376 35.683 35.694 -0.610 2.191  3.755  OX4  BDU 9  
BDU CX5  CX5  C 0 1 N N R 62.722 35.885 33.701 1.719  1.606  3.411  CX5  BDU 10 
BDU NX5  NX5  N 0 1 N N N 61.750 35.039 33.028 1.761  0.640  4.486  NX5  BDU 11 
BDU C10  C10  C 0 1 N N N 61.943 33.711 32.971 2.042  0.978  5.795  C10  BDU 12 
BDU O10  O10  O 0 1 N N N 62.984 33.138 33.374 2.287  2.101  6.221  O10  BDU 13 
BDU C11  C11  C 0 1 N N N 60.837 32.869 32.374 2.030  -0.179 6.738  C11  BDU 14 
BDU CX6  CX6  C 0 1 N N R 63.345 36.958 32.785 2.761  1.277  2.330  CX6  BDU 15 
BDU OX6  OX6  O 0 1 N N N 64.242 37.831 33.572 2.660  2.184  1.225  OX6  BDU 16 
BDU CX7  CX7  C 0 1 N N R 64.053 36.501 31.533 4.188  1.393  2.859  CX7  BDU 17 
BDU OX7  OX7  O 0 1 N N N 65.108 35.643 31.886 4.348  2.704  3.406  OX7  BDU 18 
BDU CX8  CX8  C 0 1 N N R 64.690 37.666 30.783 5.265  1.176  1.787  CX8  BDU 19 
BDU OX8  OX8  O 0 1 N N N 63.754 38.675 30.387 5.047  -0.097 1.170  OX8  BDU 20 
BDU CX9  CX9  C 0 1 N N N 65.466 37.067 29.582 6.707  1.208  2.292  CX9  BDU 21 
BDU NX6  NX6  N 0 1 N N N 66.240 38.074 28.849 6.986  0.181  3.260  NX6  BDU 22 
BDU C12  C12  C 0 1 N N N 67.436 38.562 29.233 7.408  0.464  4.553  C12  BDU 23 
BDU O12  O12  O 0 1 N N N 68.159 37.939 29.995 7.584  1.595  4.998  O12  BDU 24 
BDU C1G  C1G  C 0 1 Y N N 67.949 39.875 28.768 7.680  -0.709 5.423  C1G  BDU 25 
BDU CD1  CD1  C 0 1 Y N N 67.239 40.597 27.816 8.591  -0.579 6.450  CD1  BDU 26 
BDU CE1  CE1  C 0 1 Y N N 67.681 41.825 27.376 8.847  -1.680 7.267  CE1  BDU 27 
BDU CD2  CD2  C 0 1 Y N N 69.130 40.415 29.275 7.012  -1.891 5.176  CD2  BDU 28 
BDU CE2  CE2  C 0 1 Y N N 69.588 41.656 28.838 7.268  -2.992 5.993  CE2  BDU 29 
BDU C1Z  C1Z  C 0 1 Y N N 68.853 42.353 27.885 8.185  -2.887 7.038  C1Z  BDU 30 
BDU C2G  C2G  C 0 1 Y N N 69.349 43.653 27.345 8.450  -4.028 7.887  C2G  BDU 31 
BDU CY1  CY1  C 0 1 Y N N 68.932 44.093 26.085 9.466  -4.924 7.554  CY1  BDU 32 
BDU CY2  CY2  C 0 1 Y N N 70.210 44.451 28.092 7.690  -4.232 9.039  CY2  BDU 33 
BDU CG1  CG1  C 0 1 Y N N 69.364 45.313 25.576 9.721  -6.025 8.372  CG1  BDU 34 
BDU CG2  CG2  C 0 1 Y N N 70.649 45.679 27.595 7.946  -5.332 9.857  CG2  BDU 35 
BDU C2Z  C2Z  C 0 1 Y N N 70.225 46.111 26.333 8.961  -6.228 9.524  C2Z  BDU 36 
BDU H1B  H1B  H 0 1 N N N 63.206 39.354 32.213 -0.261 0.204  -1.341 H1B  BDU 37 
BDU HO21 1HO2 H 0 0 N N N 0.785  0.580  0.537  3.186  3.653  -1.318 HO21 BDU 38 
BDU HO22 2HO2 H 0 0 N N N -0.828 -0.493 -0.560 1.912  3.037  -2.416 HO22 BDU 39 
BDU HO23 3HO2 H 0 0 N N N -0.818 -0.610 -0.448 2.740  1.927  -1.292 HO23 BDU 40 
BDU HX31 1HX3 H 0 0 N N N 63.649 36.991 36.164 -0.698 2.515  1.097  HX31 BDU 41 
BDU HX32 2HX3 H 0 0 N N N 62.305 38.140 36.374 0.405  3.602  1.892  HX32 BDU 42 
BDU HX4  HX4  H 0 1 N N N 61.193 37.258 34.369 -0.032 0.652  2.546  HX4  BDU 43 
BDU HA   HA   H 0 1 N N N 60.390 35.751 35.633 -0.820 3.091  3.461  HA   BDU 44 
BDU HX5  HX5  H 0 1 N N N 63.539 35.239 34.056 1.947  2.578  3.869  HX5  BDU 45 
BDU HB   HB   H 0 1 N N N 60.943 35.443 32.610 1.575  -0.334 4.267  HB   BDU 46 
BDU H111 1H11 H 0 0 N N N 61.076 31.803 32.503 2.997  -0.316 7.249  H111 BDU 47 
BDU H112 2H11 H 0 0 N N N 59.888 33.096 32.883 1.289  -0.057 7.544  H112 BDU 48 
BDU H113 3H11 H 0 0 N N N 60.742 33.096 31.302 1.803  -1.156 6.282  H113 BDU 49 
BDU HX6  HX6  H 0 1 N N N 62.465 37.492 32.397 2.626  0.252  1.963  HX6  BDU 50 
BDU HX7  HX7  H 0 1 N N N 63.300 36.010 30.899 4.328  0.696  3.691  HX7  BDU 51 
BDU HC   HC   H 0 1 N N N 64.816 34.702 31.788 5.289  2.799  3.613  HC   BDU 52 
BDU HX8  HX8  H 0 1 N N N 65.376 38.202 31.455 5.156  1.924  0.992  HX8  BDU 53 
BDU HD   HD   H 0 1 N N N 62.832 38.340 30.518 4.231  -0.012 0.657  HD   BDU 54 
BDU HX91 1HX9 H 0 0 N N N 66.156 36.298 29.958 7.404  1.046  1.463  HX91 BDU 55 
BDU HX92 2HX9 H 0 0 N N N 64.726 36.645 28.886 6.944  2.171  2.755  HX92 BDU 56 
BDU HE   HE   H 0 1 N N N 65.852 38.424 28.002 6.925  -0.786 2.947  HE   BDU 57 
BDU HD1  HD1  H 0 1 N N N 66.340 40.195 27.421 9.112  0.356  6.637  HD1  BDU 58 
BDU HE1  HE1  H 0 1 N N N 67.125 42.363 26.650 9.565  -1.582 8.078  HE1  BDU 59 
BDU HD2  HD2  H 0 1 N N N 69.686 39.875 30.001 6.295  -1.984 4.364  HD2  BDU 60 
BDU HE2  HE2  H 0 1 N N N 70.487 42.065 29.228 6.743  -3.925 5.803  HE2  BDU 61 
BDU HY1  HY1  H 0 1 N N N 68.277 43.488 25.509 10.067 -4.778 6.660  HY1  BDU 62 
BDU HY2  HY2  H 0 1 N N N 70.536 44.123 29.048 6.895  -3.542 9.312  HY2  BDU 63 
BDU HG1  HG1  H 0 1 N N N 69.041 45.636 24.618 10.512 -6.722 8.113  HG1  BDU 64 
BDU HG2  HG2  H 0 1 N N N 71.303 46.284 28.173 7.354  -5.491 10.754 HG2  BDU 65 
BDU H2Z  H2Z  H 0 1 N N N 70.557 47.044 25.951 9.160  -7.085 10.161 H2Z  BDU 66 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
BDU CX1 O1A  DOUB N N 1  
BDU CX1 O1B  SING N N 2  
BDU CX1 CX2  SING N N 3  
BDU O1B H1B  SING N N 4  
BDU CX2 OX2  SING N N 5  
BDU CX2 CX3  SING N N 6  
BDU CX2 OX6  SING N N 7  
BDU OX2 CO2  SING N N 8  
BDU CO2 HO21 SING N N 9  
BDU CO2 HO22 SING N N 10 
BDU CO2 HO23 SING N N 11 
BDU CX3 CX4  SING N N 12 
BDU CX3 HX31 SING N N 13 
BDU CX3 HX32 SING N N 14 
BDU CX4 OX4  SING N N 15 
BDU CX4 CX5  SING N N 16 
BDU CX4 HX4  SING N N 17 
BDU OX4 HA   SING N N 18 
BDU CX5 NX5  SING N N 19 
BDU CX5 CX6  SING N N 20 
BDU CX5 HX5  SING N N 21 
BDU NX5 C10  SING N N 22 
BDU NX5 HB   SING N N 23 
BDU C10 O10  DOUB N N 24 
BDU C10 C11  SING N N 25 
BDU C11 H111 SING N N 26 
BDU C11 H112 SING N N 27 
BDU C11 H113 SING N N 28 
BDU CX6 OX6  SING N N 29 
BDU CX6 CX7  SING N N 30 
BDU CX6 HX6  SING N N 31 
BDU CX7 OX7  SING N N 32 
BDU CX7 CX8  SING N N 33 
BDU CX7 HX7  SING N N 34 
BDU OX7 HC   SING N N 35 
BDU CX8 OX8  SING N N 36 
BDU CX8 CX9  SING N N 37 
BDU CX8 HX8  SING N N 38 
BDU OX8 HD   SING N N 39 
BDU CX9 NX6  SING N N 40 
BDU CX9 HX91 SING N N 41 
BDU CX9 HX92 SING N N 42 
BDU NX6 C12  SING N N 43 
BDU NX6 HE   SING N N 44 
BDU C12 O12  DOUB N N 45 
BDU C12 C1G  SING N N 46 
BDU C1G CD1  DOUB Y N 47 
BDU C1G CD2  SING Y N 48 
BDU CD1 CE1  SING Y N 49 
BDU CD1 HD1  SING N N 50 
BDU CE1 C1Z  DOUB Y N 51 
BDU CE1 HE1  SING N N 52 
BDU CD2 CE2  DOUB Y N 53 
BDU CD2 HD2  SING N N 54 
BDU CE2 C1Z  SING Y N 55 
BDU CE2 HE2  SING N N 56 
BDU C1Z C2G  SING Y N 57 
BDU C2G CY1  DOUB Y N 58 
BDU C2G CY2  SING Y N 59 
BDU CY1 CG1  SING Y N 60 
BDU CY1 HY1  SING N N 61 
BDU CY2 CG2  DOUB Y N 62 
BDU CY2 HY2  SING N N 63 
BDU CG1 C2Z  DOUB Y N 64 
BDU CG1 HG1  SING N N 65 
BDU CG2 C2Z  SING Y N 66 
BDU CG2 HG2  SING N N 67 
BDU C2Z H2Z  SING N N 68 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
BDU SMILES           ACDLabs              10.04 "O=C(c2ccc(c1ccccc1)cc2)NCC(O)C(O)C3OC(OC)(C(=O)O)CC(O)C3NC(=O)C" 
BDU SMILES_CANONICAL CACTVS               3.341 "CO[C@@]1(C[C@H](O)[C@@H](NC(C)=O)[C@@H](O1)[C@H](O)[C@H](O)CNC(=O)c2ccc(cc2)c3ccccc3)C(O)=O" 
BDU SMILES           CACTVS               3.341 "CO[C]1(C[CH](O)[CH](NC(C)=O)[CH](O1)[CH](O)[CH](O)CNC(=O)c2ccc(cc2)c3ccccc3)C(O)=O" 
BDU SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC(=O)N[C@@H]1[C@H](C[C@@](O[C@H]1[C@@H]([C@@H](CNC(=O)c2ccc(cc2)c3ccccc3)O)O)(C(=O)O)OC)O" 
BDU SMILES           "OpenEye OEToolkits" 1.5.0 "CC(=O)NC1C(CC(OC1C(C(CNC(=O)c2ccc(cc2)c3ccccc3)O)O)(C(=O)O)OC)O" 
BDU InChI            InChI                1.03  
"InChI=1S/C25H30N2O9/c1-14(28)27-20-18(29)12-25(35-2,24(33)34)36-22(20)21(31)19(30)13-26-23(32)17-10-8-16(9-11-17)15-6-4-3-5-7-15/h3-11,18-22,29-31H,12-13H2,1-2H3,(H,26,32)(H,27,28)(H,33,34)/t18-,19+,20+,21+,22+,25+/m0/s1" 
BDU InChIKey         InChI                1.03  WBWCOQWBSRYCDR-TUTCKEIYSA-N 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
BDU "SYSTEMATIC NAME" ACDLabs              10.04 "methyl 5-(acetylamino)-9-[(biphenyl-4-ylcarbonyl)amino]-3,5,9-trideoxy-D-glycero-alpha-D-galacto-non-2-ulopyranosidonic acid"            
BDU "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R,4S,5R,6R)-5-acetamido-6-[(1R,2R)-1,2-dihydroxy-3-[(4-phenylphenyl)carbonylamino]propyl]-4-hydroxy-2-methoxy-oxane-2-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
BDU "Create component"     2003-02-14 EBI  
BDU "Modify aromatic_flag" 2011-06-04 RCSB 
BDU "Modify descriptor"    2011-06-04 RCSB 
# 
