data_B5U
# 
_chem_comp.id                                    B5U 
_chem_comp.name                                  "6-(3,4-dimethylphenyl)-3-[[4-[3-(4-methylpiperazin-1-yl)propoxy]phenyl]amino]pyrazine-2-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C27 H34 N6 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-08-09 
_chem_comp.pdbx_modified_date                    2014-09-05 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        474.598 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     B5U 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4B6C 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
B5U C1   C1   C 0 1 N N N -3.547  27.116 63.784 8.086   4.913  0.195  C1   B5U 1  
B5U C2   C2   C 0 1 Y N N -3.665  25.666 64.197 7.146   3.737  0.132  C2   B5U 2  
B5U C3   C3   C 0 1 Y N N -2.839  24.722 63.585 5.779   3.948  0.088  C3   B5U 3  
B5U C4   C4   C 0 1 Y N N -2.912  23.377 63.907 4.914   2.874  0.030  C4   B5U 4  
B5U C5   C5   C 0 1 Y N N -3.799  22.917 64.876 5.420   1.575  0.016  C5   B5U 5  
B5U C6   C6   C 0 1 Y N N -4.638  23.850 65.490 6.797   1.369  0.060  C6   B5U 6  
B5U C7   C7   C 0 1 Y N N -4.617  25.211 65.158 7.653   2.450  0.112  C7   B5U 7  
B5U C8   C8   C 0 1 N N N -5.585  26.128 65.869 9.143   2.229  0.154  C8   B5U 8  
B5U C9   C9   C 0 1 Y N N -3.881  21.470 65.220 4.495   0.417  -0.046 C9   B5U 9  
B5U C10  C10  C 0 1 Y N N -4.944  20.902 65.943 3.120   0.629  -0.195 C10  B5U 10 
B5U N11  N11  N 0 1 Y N N -5.009  19.585 66.219 2.294   -0.397 -0.251 N11  B5U 11 
B5U C12  C12  C 0 1 Y N N -4.002  18.819 65.753 2.764   -1.637 -0.166 C12  B5U 12 
B5U C13  C13  C 0 1 Y N N -2.889  19.376 65.041 4.144   -1.853 -0.016 C13  B5U 13 
B5U N14  N14  N 0 1 Y N N -2.890  20.690 64.741 4.973   -0.816 0.034  N14  B5U 14 
B5U C15  C15  C 0 1 N N N -1.770  18.553 64.432 4.672   -3.230 0.079  C15  B5U 15 
B5U O16  O16  O 0 1 N N N -1.810  17.322 64.423 3.934   -4.178 -0.106 O16  B5U 16 
B5U N17  N17  N 0 1 N N N -0.795  19.239 63.845 5.972   -3.434 0.370  N17  B5U 17 
B5U N18  N18  N 0 1 N N N -4.036  17.449 65.967 1.897   -2.712 -0.224 N18  B5U 18 
B5U C19  C19  C 0 1 Y N N -5.040  16.606 66.492 0.515   -2.502 -0.143 C19  B5U 19 
B5U C20  C20  C 0 1 Y N N -5.899  17.026 67.519 -0.318  -3.520 0.303  C20  B5U 20 
B5U C21  C21  C 0 1 Y N N -6.811  16.141 68.085 -1.681  -3.312 0.383  C21  B5U 21 
B5U C22  C22  C 0 1 Y N N -6.874  14.820 67.616 -2.218  -2.086 0.017  C22  B5U 22 
B5U C23  C23  C 0 1 Y N N -6.030  14.402 66.589 -1.387  -1.069 -0.429 C23  B5U 23 
B5U C24  C24  C 0 1 Y N N -5.109  15.290 66.036 -0.023  -1.274 -0.504 C24  B5U 24 
B5U O25  O25  O 0 1 N N N -7.819  13.923 68.062 -3.560  -1.882 0.096  O25  B5U 25 
B5U C26  C26  C 0 1 N N N -8.694  14.242 69.172 -4.045  -0.596 -0.296 C26  B5U 26 
B5U C27  C27  C 0 1 N N N -9.426  12.992 69.606 -5.566  -0.556 -0.141 C27  B5U 27 
B5U C28  C28  C 0 1 N N N -10.600 12.524 68.751 -6.085  0.821  -0.561 C28  B5U 28 
B5U N29  N29  N 0 1 N N N -11.606 13.575 68.419 -7.546  0.860  -0.412 N29  B5U 29 
B5U C30  C30  C 0 1 N N N -12.764 13.524 69.327 -8.106  2.073  -1.024 C30  B5U 30 
B5U C31  C31  C 0 1 N N N -13.757 14.628 68.988 -9.632  2.037  -0.918 C31  B5U 31 
B5U N32  N32  N 0 1 N N N -14.224 14.512 67.608 -10.020 1.937  0.496  N32  B5U 32 
B5U C33  C33  C 0 1 N N N -13.080 14.525 66.695 -9.460  0.724  1.108  C33  B5U 33 
B5U C34  C34  C 0 1 N N N -12.080 13.431 67.036 -7.934  0.760  1.002  C34  B5U 34 
B5U C35  C35  C 0 1 N N N -15.150 15.599 67.286 -11.481 1.976  0.645  C35  B5U 35 
B5U H11C H11C H 0 0 N N N -4.222  27.313 62.938 8.276   5.172  1.236  H11C B5U 36 
B5U H12C H12C H 0 0 N N N -3.822  27.762 64.631 9.026   4.654  -0.293 H12C B5U 37 
B5U H13C H13C H 0 0 N N N -2.511  27.328 63.483 7.635   5.766  -0.315 H13C B5U 38 
B5U H3   H3   H 0 1 N N N -2.126  25.048 62.842 5.389   4.955  0.100  H3   B5U 39 
B5U H4   H4   H 0 1 N N N -2.270  22.673 63.398 3.848   3.040  -0.003 H4   B5U 40 
B5U H6   H6   H 0 1 N N N -5.328  23.510 66.248 7.194   0.364  0.049  H6   B5U 41 
B5U H81C H81C H 0 0 N N N -6.520  26.192 65.294 9.470   2.147  1.191  H81C B5U 42 
B5U H82C H82C H 0 0 N N N -5.798  25.730 66.872 9.389   1.310  -0.378 H82C B5U 43 
B5U H83C H83C H 0 0 N N N -5.141  27.130 65.959 9.649   3.070  -0.320 H83C B5U 44 
B5U H10  H10  H 0 1 N N N -5.739  21.546 66.290 2.735   1.635  -0.264 H10  B5U 45 
B5U H18  H18  H 0 1 N N N -3.198  16.972 65.702 2.245   -3.612 -0.321 H18  B5U 46 
B5U H171 H171 H 0 0 N N N -0.057  18.756 63.373 6.561   -2.678 0.518  H171 B5U 47 
B5U H172 H172 H 0 0 N N N -0.799  20.239 63.875 6.319   -4.338 0.433  H172 B5U 48 
B5U H20  H20  H 0 1 N N N -5.852  18.045 67.873 0.100   -4.474 0.587  H20  B5U 49 
B5U H24  H24  H 0 1 N N N -4.446  14.957 65.251 0.624   -0.480 -0.847 H24  B5U 50 
B5U H21  H21  H 0 1 N N N -7.466  16.468 68.879 -2.328  -4.103 0.729  H21  B5U 51 
B5U H23  H23  H 0 1 N N N -6.090  13.388 66.221 -1.806  -0.115 -0.713 H23  B5U 52 
B5U H261 H261 H 0 0 N N N -8.097  14.628 70.011 -3.595  0.170  0.335  H261 B5U 53 
B5U H262 H262 H 0 0 N N N -9.422  15.004 68.858 -3.781  -0.410 -1.337 H262 B5U 54 
B5U H271 H271 H 0 0 N N N -8.692  12.174 69.632 -6.016  -1.322 -0.772 H271 B5U 55 
B5U H272 H272 H 0 0 N N N -9.810  13.172 70.621 -5.830  -0.742 0.900  H272 B5U 56 
B5U H281 H281 H 0 0 N N N -10.197 12.129 67.807 -5.635  1.587  0.070  H281 B5U 57 
B5U H282 H282 H 0 0 N N N -11.116 11.719 69.294 -5.821  1.007  -1.602 H282 B5U 58 
B5U H301 H301 H 0 0 N N N -13.260 12.547 69.226 -7.726  2.952  -0.503 H301 B5U 59 
B5U H302 H302 H 0 0 N N N -12.418 13.654 70.363 -7.815  2.118  -2.074 H302 B5U 60 
B5U H341 H341 H 0 0 N N N -11.222 13.499 66.351 -7.518  -0.152 1.429  H341 B5U 61 
B5U H342 H342 H 0 0 N N N -12.564 12.450 66.920 -7.552  1.624  1.546  H342 B5U 62 
B5U H311 H311 H 0 0 N N N -14.620 14.555 69.666 -10.048 2.950  -1.345 H311 B5U 63 
B5U H312 H312 H 0 0 N N N -13.268 15.604 69.121 -10.014 1.173  -1.462 H312 B5U 64 
B5U H331 H331 H 0 0 N N N -13.441 14.371 65.668 -9.751  0.679  2.158  H331 B5U 65 
B5U H332 H332 H 0 0 N N N -12.579 15.502 66.765 -9.841  -0.155 0.587  H332 B5U 66 
B5U H351 H351 H 0 0 N N N -15.490 15.495 66.245 -11.924 1.142  0.101  H351 B5U 67 
B5U H352 H352 H 0 0 N N N -16.017 15.554 67.961 -11.741 1.900  1.701  H352 B5U 68 
B5U H353 H353 H 0 0 N N N -14.639 16.565 67.410 -11.862 2.915  0.243  H353 B5U 69 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
B5U C1  C2   SING N N 1  
B5U C2  C3   SING Y N 2  
B5U C2  C7   DOUB Y N 3  
B5U C3  C4   DOUB Y N 4  
B5U C4  C5   SING Y N 5  
B5U C5  C6   DOUB Y N 6  
B5U C5  C9   SING N N 7  
B5U C6  C7   SING Y N 8  
B5U C7  C8   SING N N 9  
B5U C9  C10  SING Y N 10 
B5U C9  N14  DOUB Y N 11 
B5U C10 N11  DOUB Y N 12 
B5U N11 C12  SING Y N 13 
B5U C12 C13  DOUB Y N 14 
B5U C12 N18  SING N N 15 
B5U C13 N14  SING Y N 16 
B5U C13 C15  SING N N 17 
B5U C15 O16  DOUB N N 18 
B5U C15 N17  SING N N 19 
B5U N18 C19  SING N N 20 
B5U C19 C20  SING Y N 21 
B5U C19 C24  DOUB Y N 22 
B5U C20 C21  DOUB Y N 23 
B5U C21 C22  SING Y N 24 
B5U C22 C23  DOUB Y N 25 
B5U C22 O25  SING N N 26 
B5U C23 C24  SING Y N 27 
B5U O25 C26  SING N N 28 
B5U C26 C27  SING N N 29 
B5U C27 C28  SING N N 30 
B5U C28 N29  SING N N 31 
B5U N29 C30  SING N N 32 
B5U N29 C34  SING N N 33 
B5U C30 C31  SING N N 34 
B5U C31 N32  SING N N 35 
B5U N32 C33  SING N N 36 
B5U N32 C35  SING N N 37 
B5U C33 C34  SING N N 38 
B5U C1  H11C SING N N 39 
B5U C1  H12C SING N N 40 
B5U C1  H13C SING N N 41 
B5U C3  H3   SING N N 42 
B5U C4  H4   SING N N 43 
B5U C6  H6   SING N N 44 
B5U C8  H81C SING N N 45 
B5U C8  H82C SING N N 46 
B5U C8  H83C SING N N 47 
B5U C10 H10  SING N N 48 
B5U N18 H18  SING N N 49 
B5U N17 H171 SING N N 50 
B5U N17 H172 SING N N 51 
B5U C20 H20  SING N N 52 
B5U C24 H24  SING N N 53 
B5U C21 H21  SING N N 54 
B5U C23 H23  SING N N 55 
B5U C26 H261 SING N N 56 
B5U C26 H262 SING N N 57 
B5U C27 H271 SING N N 58 
B5U C27 H272 SING N N 59 
B5U C28 H281 SING N N 60 
B5U C28 H282 SING N N 61 
B5U C30 H301 SING N N 62 
B5U C30 H302 SING N N 63 
B5U C34 H341 SING N N 64 
B5U C34 H342 SING N N 65 
B5U C31 H311 SING N N 66 
B5U C31 H312 SING N N 67 
B5U C33 H331 SING N N 68 
B5U C33 H332 SING N N 69 
B5U C35 H351 SING N N 70 
B5U C35 H352 SING N N 71 
B5U C35 H353 SING N N 72 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
B5U SMILES           ACDLabs              12.01 "O=C(N)c2nc(c1ccc(c(c1)C)C)cnc2Nc4ccc(OCCCN3CCN(CC3)C)cc4"                                                                                                                          
B5U InChI            InChI                1.03  "InChI=1S/C27H34N6O2/c1-19-5-6-21(17-20(19)2)24-18-29-27(25(31-24)26(28)34)30-22-7-9-23(10-8-22)35-16-4-11-33-14-12-32(3)13-15-33/h5-10,17-18H,4,11-16H2,1-3H3,(H2,28,34)(H,29,30)" 
B5U InChIKey         InChI                1.03  SMJHCUSNBTWDKM-UHFFFAOYSA-N                                                                                                                                                         
B5U SMILES_CANONICAL CACTVS               3.385 "CN1CCN(CCCOc2ccc(Nc3ncc(nc3C(N)=O)c4ccc(C)c(C)c4)cc2)CC1"                                                                                                                          
B5U SMILES           CACTVS               3.385 "CN1CCN(CCCOc2ccc(Nc3ncc(nc3C(N)=O)c4ccc(C)c(C)c4)cc2)CC1"                                                                                                                          
B5U SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "Cc1ccc(cc1C)c2cnc(c(n2)C(=O)N)Nc3ccc(cc3)OCCCN4CCN(CC4)C"                                                                                                                          
B5U SMILES           "OpenEye OEToolkits" 1.9.2 "Cc1ccc(cc1C)c2cnc(c(n2)C(=O)N)Nc3ccc(cc3)OCCCN4CCN(CC4)C"                                                                                                                          
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
B5U "SYSTEMATIC NAME" ACDLabs              12.01 "6-(3,4-dimethylphenyl)-3-({4-[3-(4-methylpiperazin-1-yl)propoxy]phenyl}amino)pyrazine-2-carboxamide" 
B5U "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "6-(3,4-dimethylphenyl)-3-[[4-[3-(4-methylpiperazin-1-yl)propoxy]phenyl]amino]pyrazine-2-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
B5U "Create component"  2012-08-09 EBI  
B5U "Initial release"   2013-01-18 RCSB 
B5U "Modify descriptor" 2014-09-05 RCSB 
# 
