data_ARU
#

_chem_comp.id                                   ARU
_chem_comp.name                                 "5'-O-[(R)-{[(R)-[dibromo(phosphono)methyl](hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]-N,N-diethyladenosine"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C15 H24 Br2 N5 O12 P3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "ARL 67156"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2009-12-07
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       719.107
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    ARU
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3AAQ
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
ARU  N1      N1    N   0  1  Y  N  N  35.314  25.889  32.623   -8.303   0.859   1.154  N1    ARU   1  
ARU  C2      C2    C   0  1  Y  N  N  34.022  25.717  32.647   -7.881  -0.200   1.819  C2    ARU   2  
ARU  N3      N3    N   0  1  Y  N  N  33.184  26.622  32.268   -6.711  -0.758   1.589  N3    ARU   3  
ARU  C4      C4    C   0  1  Y  N  N  33.644  27.783  31.836   -5.896  -0.266   0.662  C4    ARU   4  
ARU  C5      C5    C   0  1  Y  N  N  34.990  28.030  31.801   -6.300   0.861  -0.073  C5    ARU   5  
ARU  C6      C6    C   0  1  Y  N  N  35.843  27.034  32.219   -7.557   1.421   0.208  C6    ARU   6  
ARU  N6      N6    N   0  1  N  N  N  37.150  27.181  32.202   -8.009   2.531  -0.483  N6    ARU   7  
ARU  N7      N7    N   0  1  Y  N  N  35.149  29.247  31.338   -5.299   1.153  -0.938  N7    ARU   8  
ARU  C8      C8    C   0  1  Y  N  N  33.948  29.743  31.109   -4.331   0.297  -0.785  C8    ARU   9  
ARU  N9      N9    N   0  1  Y  N  N  33.032  28.849  31.413   -4.651  -0.599   0.191  N9    ARU  10  
ARU  "C1'"   C1*   C   0  1  N  N  R  31.601  28.956  31.293   -3.819  -1.712   0.653  C1*   ARU  11  
ARU  "C2'"   C2*   C   0  1  N  N  R  30.981  30.322  31.403   -4.203  -3.022  -0.082  C2*   ARU  12  
ARU  "O2'"   O2*   O   0  1  N  N  N  30.857  30.703  32.731   -5.281  -3.682   0.584  O2*   ARU  13  
ARU  "C3'"   C3*   C   0  1  N  N  S  29.633  30.111  30.742   -2.898  -3.849   0.026  C3*   ARU  14  
ARU  "O3'"   O3*   O   0  1  N  N  N  28.601  29.892  31.686   -2.979  -4.770   1.116  O3*   ARU  15  
ARU  "C4'"   C4*   C   0  1  N  N  R  29.852  28.827  29.977   -1.804  -2.796   0.290  C4*   ARU  16  
ARU  "O4'"   O4*   O   0  1  N  N  N  31.257  28.656  29.966   -2.440  -1.507   0.276  O4*   ARU  17  
ARU  "C5'"   C5*   C   0  1  N  N  N  29.285  29.179  28.668   -0.741  -2.864  -0.809  C5*   ARU  18  
ARU  "O5'"   O5*   O   0  1  N  N  N  30.236  29.845  28.006    0.326  -1.967  -0.495  O5*   ARU  19  
ARU  CAA     CAA   C   0  1  N  N  N  37.768  28.751  30.474  -10.392   1.978  -0.589  CAA   ARU  20  
ARU  CAB     CAB   C   0  1  N  N  N  37.741  28.493  31.960   -9.343   2.934  -0.019  CAB   ARU  21  
ARU  CAD     CAD   C   0  1  N  N  N  38.014  26.022  32.378   -7.056   3.644  -0.374  CAD   ARU  22  
ARU  CAE     CAE   C   0  1  N  N  N  39.324  26.422  33.040   -7.364   4.687  -1.449  CAE   ARU  23  
ARU  OAF     OAF   O   0  1  N  N  N  27.453  35.825  25.775    7.405  -0.168   0.171  OAF   ARU  24  
ARU  BRAG    BRAG  BR  0  0  N  N  N  27.770  33.775  29.501    4.525   0.058   2.087  BRAG  ARU  25  
ARU  OAH     OAH   O   0  1  N  N  N  28.077  32.898  25.437    5.102  -1.792  -0.787  OAH   ARU  26  
ARU  OAI     OAI   O   0  1  N  N  N  31.064  31.527  26.536    2.255  -3.096  -1.668  OAI   ARU  27  
ARU  OAJ     OAJ   O   0  1  N  N  N  27.773  36.831  27.807    6.710   1.718  -1.356  OAJ   ARU  28  
ARU  PAK     PAK   P   0  1  N  N  N  27.255  35.755  27.139    6.528   1.172   0.007  PAK   ARU  29  
ARU  CAL     CAL   C   0  1  N  N  N  28.178  34.213  27.711    4.768   0.783   0.276  CAL   ARU  30  
ARU  PAM     PAM   P   0  1  N  N  N  27.712  32.658  26.777    4.225  -0.452  -0.950  PAM   ARU  31  
ARU  OAN     OAN   O   0  1  N  N  N  28.594  31.646  27.523    2.670  -0.796  -0.713  OAN   ARU  32  
ARU  PAO     PAO   P   0  1  N  N  N  29.870  30.862  26.925    1.619  -1.779  -1.435  PAO   ARU  33  
ARU  OAV     OAV   O   0  1  N  N  N  25.919  35.496  27.474    7.008   2.263   1.090  OAV   ARU  34  
ARU  BRAW    BRAW  BR  0  0  N  N  N  30.077  34.619  27.515    3.697   2.419   0.076  BRAW  ARU  35  
ARU  OAX     OAX   O   0  1  N  N  N  26.362  32.352  26.914    4.407   0.094  -2.314  OAX   ARU  36  
ARU  OAY     OAY   O   0  1  N  N  N  29.211  29.986  25.830    1.170  -1.144  -2.845  OAY   ARU  37  
ARU  H2      H2    H   0  1  N  N  N  33.635  24.773  33.001   -8.519  -0.625   2.580  H2    ARU  38  
ARU  H8      H8    H   0  1  N  N  N  33.747  30.734  30.729   -3.409   0.297  -1.348  H8    ARU  39  
ARU  "H1'"   H1*   H   0  1  N  N  N  31.251  28.312  32.113   -3.909  -1.836   1.732  H1*   ARU  40  
ARU  "H2'"   H2*   H   0  1  N  N  N  31.570  31.126  30.937   -4.454  -2.824  -1.124  H2*   ARU  41  
ARU  "HO2'"  HO2*  H   0  0  N  N  N  30.464  31.567  32.778   -5.558  -4.507   0.162  HO2*  ARU  42  
ARU  "H3'"   H3*   H   0  1  N  N  N  29.326  30.981  30.143   -2.704  -4.378  -0.906  H3*   ARU  43  
ARU  "HO3'"  HO3*  H   0  0  N  N  N  27.777  29.765  31.231   -3.689  -5.420   1.029  HO3*  ARU  44  
ARU  "H4'"   H4*   H   0  1  N  N  N  29.407  27.894  30.355   -1.346  -2.973   1.263  H4*   ARU  45  
ARU  "H5'"   H5*   H   0  1  N  N  N  28.998  28.271  28.117   -0.354  -3.880  -0.877  H5*   ARU  46  
ARU  "H5'A"  H5*A  H   0  0  N  N  N  28.392  29.808  28.793   -1.186  -2.580  -1.763  H5*A  ARU  47  
ARU  HAA     HAA   H   0  1  N  N  N  38.212  29.739  30.281  -10.299   1.942  -1.675  HAA   ARU  48  
ARU  HAAA    HAAA  H   0  0  N  N  N  38.370  27.975  29.978  -10.236   0.980  -0.178  HAAA  ARU  49  
ARU  HAAB    HAAB  H   0  0  N  N  N  36.742  28.727  30.079  -11.389   2.330  -0.322  HAAB  ARU  50  
ARU  HAB     HAB   H   0  1  N  N  N  37.140  29.267  32.459   -9.375   2.900   1.070  HAB   ARU  51  
ARU  HABA    HABA  H   0  0  N  N  N  38.766  28.516  32.358   -9.555   3.949  -0.357  HABA  ARU  52  
ARU  HAD     HAD   H   0  1  N  N  N  37.501  25.285  33.013   -7.142   4.101   0.612  HAD   ARU  53  
ARU  HADA    HADA  H   0  0  N  N  N  38.229  25.582  31.393   -6.042   3.268  -0.512  HADA  ARU  54  
ARU  HAE     HAE   H   0  1  N  N  N  39.960  25.533  33.163   -7.257   4.235  -2.435  HAE   ARU  55  
ARU  HAEA    HAEA  H   0  0  N  N  N  39.843  27.159  32.410   -8.385   5.048  -1.323  HAEA  ARU  56  
ARU  HAEB    HAEB  H   0  0  N  N  N  39.117  26.863  34.026   -6.669   5.522  -1.355  HAEB  ARU  57  
ARU  HOAF    HOAF  H   0  0  N  N  N  27.921  36.624  25.563    7.334  -0.581   1.042  HOAF  ARU  58  
ARU  HOAH    HOAH  H   0  0  N  N  N  27.315  32.802  24.879    5.030  -2.205   0.084  HOAH  ARU  59  
ARU  HOAV    HOAV  H   0  0  N  N  N  25.624  36.132  28.115    7.937   2.518   1.007  HOAV  ARU  60  
ARU  HOAY    HOAY  H   0  0  N  N  N  29.728  30.030  25.034    0.745  -0.279  -2.769  HOAY  ARU  61  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ARU  N1      C2      DOUB  Y  N   1  
ARU  N1      C6      SING  Y  N   2  
ARU  C2      N3      SING  Y  N   3  
ARU  N3      C4      DOUB  Y  N   4  
ARU  C4      C5      SING  Y  N   5  
ARU  C4      N9      SING  Y  N   6  
ARU  C5      C6      DOUB  Y  N   7  
ARU  C5      N7      SING  Y  N   8  
ARU  C6      N6      SING  N  N   9  
ARU  N6      CAB     SING  N  N  10  
ARU  N6      CAD     SING  N  N  11  
ARU  N7      C8      DOUB  Y  N  12  
ARU  C8      N9      SING  Y  N  13  
ARU  N9      "C1'"   SING  N  N  14  
ARU  "C1'"   "C2'"   SING  N  N  15  
ARU  "C1'"   "O4'"   SING  N  N  16  
ARU  "C2'"   "O2'"   SING  N  N  17  
ARU  "C2'"   "C3'"   SING  N  N  18  
ARU  "C3'"   "O3'"   SING  N  N  19  
ARU  "C3'"   "C4'"   SING  N  N  20  
ARU  "C4'"   "O4'"   SING  N  N  21  
ARU  "C4'"   "C5'"   SING  N  N  22  
ARU  "C5'"   "O5'"   SING  N  N  23  
ARU  "O5'"   PAO     SING  N  N  24  
ARU  CAA     CAB     SING  N  N  25  
ARU  CAD     CAE     SING  N  N  26  
ARU  OAF     PAK     SING  N  N  27  
ARU  BRAG    CAL     SING  N  N  28  
ARU  OAH     PAM     SING  N  N  29  
ARU  OAI     PAO     DOUB  N  N  30  
ARU  OAJ     PAK     DOUB  N  N  31  
ARU  PAK     CAL     SING  N  N  32  
ARU  PAK     OAV     SING  N  N  33  
ARU  CAL     PAM     SING  N  N  34  
ARU  CAL     BRAW    SING  N  N  35  
ARU  PAM     OAN     SING  N  N  36  
ARU  PAM     OAX     DOUB  N  N  37  
ARU  OAN     PAO     SING  N  N  38  
ARU  PAO     OAY     SING  N  N  39  
ARU  C2      H2      SING  N  N  40  
ARU  C8      H8      SING  N  N  41  
ARU  "C1'"   "H1'"   SING  N  N  42  
ARU  "C2'"   "H2'"   SING  N  N  43  
ARU  "O2'"   "HO2'"  SING  N  N  44  
ARU  "C3'"   "H3'"   SING  N  N  45  
ARU  "O3'"   "HO3'"  SING  N  N  46  
ARU  "C4'"   "H4'"   SING  N  N  47  
ARU  "C5'"   "H5'"   SING  N  N  48  
ARU  "C5'"   "H5'A"  SING  N  N  49  
ARU  CAA     HAA     SING  N  N  50  
ARU  CAA     HAAA    SING  N  N  51  
ARU  CAA     HAAB    SING  N  N  52  
ARU  CAB     HAB     SING  N  N  53  
ARU  CAB     HABA    SING  N  N  54  
ARU  CAD     HAD     SING  N  N  55  
ARU  CAD     HADA    SING  N  N  56  
ARU  CAE     HAE     SING  N  N  57  
ARU  CAE     HAEA    SING  N  N  58  
ARU  CAE     HAEB    SING  N  N  59  
ARU  OAF     HOAF    SING  N  N  60  
ARU  OAH     HOAH    SING  N  N  61  
ARU  OAV     HOAV    SING  N  N  62  
ARU  OAY     HOAY    SING  N  N  63  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
ARU  SMILES_CANONICAL  CACTVS                3.352  "CCN(CC)c1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(=O)O[P](O)(=O)C(Br)(Br)[P](O)(O)=O)[C@@H](O)[C@H]3O"  
ARU  SMILES            CACTVS                3.352  "CCN(CC)c1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)C(Br)(Br)[P](O)(O)=O)[CH](O)[CH]3O"  
ARU  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.0  "CCN(CC)c1c2c(ncn1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@@](=O)(O)O[P@@](=O)(C(P(=O)(O)O)(Br)Br)O)O)O"  
ARU  SMILES            "OpenEye OEToolkits"  1.7.0  "CCN(CC)c1c2c(ncn1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(C(P(=O)(O)O)(Br)Br)O)O)O"  
ARU  InChI             InChI                 1.03   "InChI=1S/C15H24Br2N5O12P3/c1-3-21(4-2)12-9-13(19-6-18-12)22(7-20-9)14-11(24)10(23)8(33-14)5-32-37(30,31)34-36(28,29)15(16,17)35(25,26)27/h6-8,10-11,14,23-24H,3-5H2,1-2H3,(H,28,29)(H,30,31)(H2,25,26,27)/t8-,10-,11-,14-/m1/s1"  
ARU  InChIKey          InChI                 1.03   ILXFKEOLRYLPJG-IDTAVKCVSA-N  
#
_pdbx_chem_comp_identifier.comp_id          ARU
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  1.6.1
_pdbx_chem_comp_identifier.identifier       "[dibromo-[[[(2R,3S,4R,5R)-5-[6-(diethylamino)purin-9-yl]-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-hydroxy-phosphoryl]methyl]phosphonic acid"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
ARU  "Create component"      2009-12-07  PDBJ  
ARU  "Modify aromatic_flag"  2011-06-04  RCSB  
ARU  "Modify descriptor"     2011-06-04  RCSB  
ARU  "Modify synonyms"       2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     ARU
_pdbx_chem_comp_synonyms.name        "ARL 67156"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
