data_9TU
#

_chem_comp.id                                   9TU
_chem_comp.name                                 "N6-[({3-[3-(trifluoromethyl)-3H-diaziren-3-yl]phenyl}methoxy)carbonyl]-L-lysine"
_chem_comp.type                                 "peptide linking"
_chem_comp.pdbx_type                            ATOMP
_chem_comp.formula                              "C16 H19 F3 N4 O4"
_chem_comp.mon_nstd_parent_comp_id              LYS
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2018-07-31
_chem_comp.pdbx_modified_date                   2019-04-12
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       388.342
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    9TU
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6AAD
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
9TU  C10  C1   C  0  1  Y  N  N  260.572  47.791  138.599  -2.886   1.808  -0.100  C10  9TU   1  
9TU  C13  C2   C  0  1  N  N  N  258.484  46.956  140.857   0.718   1.554   0.529  C13  9TU   2  
9TU  CD   C3   C  0  1  N  N  N  255.802  47.399  142.158   4.094   0.129  -0.102  CD   9TU   3  
9TU  CA   C4   C  0  1  N  N  S  254.800  49.789  143.899   7.888  -0.354   0.338  CA   9TU   4  
9TU  C    C5   C  0  1  N  N  N  254.264  50.710  145.003   8.843  -1.350  -0.270  C    9TU   5  
9TU  C26  C6   C  0  1  Y  N  N  261.021  47.930  136.216  -4.461   2.161  -1.869  C26  9TU   6  
9TU  N1   N1   N  0  1  N  N  N  259.289  51.832  136.199  -7.137  -0.315   0.663  N1   9TU   7  
9TU  N2   N2   N  0  1  N  N  N  260.525  51.921  135.875  -6.381  -0.420   1.640  N2   9TU   8  
9TU  C3   C7   C  0  1  N  N  N  260.276  51.402  137.212  -5.742  -0.622   0.337  C3   9TU   9  
9TU  C4   C8   C  0  1  N  N  N  260.617  52.275  138.419  -5.387  -2.047  -0.092  C4   9TU  10  
9TU  F5   F1   F  0  1  N  N  N  261.149  51.617  139.470  -6.195  -2.957   0.599  F5   9TU  11  
9TU  F6   F2   F  0  1  N  N  N  259.507  52.899  138.822  -5.599  -2.186  -1.468  F6   9TU  12  
9TU  F7   F3   F  0  1  N  N  N  261.478  53.196  137.987  -4.043  -2.301   0.201  F7   9TU  13  
9TU  C8   C9   C  0  1  Y  N  N  260.497  49.901  137.418  -4.873   0.477  -0.218  C8   9TU  14  
9TU  C9   C10  C  0  1  Y  N  N  260.362  49.169  138.628  -3.684   0.800   0.409  C9   9TU  15  
9TU  C11  C11  C  0  1  N  N  N  260.566  46.739  139.743  -1.590   2.161   0.583  C11  9TU  16  
9TU  O12  O1   O  0  1  N  N  N  259.886  47.090  140.968  -0.515   1.360   0.024  O12  9TU  17  
9TU  O14  O2   O  0  1  N  N  N  258.036  45.859  140.865   0.891   2.371   1.412  O14  9TU  18  
9TU  NZ   N3   N  0  1  N  N  N  257.552  48.051  140.687   1.760   0.843   0.055  NZ   9TU  19  
9TU  CE   C12  C  0  1  N  N  N  256.143  47.684  140.713   3.102   1.055   0.604  CE   9TU  20  
9TU  CG   C13  C  0  1  N  N  N  254.367  47.759  142.524   5.495   0.350   0.471  CG   9TU  21  
9TU  CB   C14  C  0  1  N  N  N  254.369  48.326  143.946   6.487  -0.575  -0.236  CB   9TU  22  
9TU  N    N4   N  0  1  N  N  N  256.280  49.905  143.901   8.337   1.009   0.024  N    9TU  23  
9TU  OXT  O3   O  0  1  N  Y  N  254.663  50.515  146.292   8.887  -2.608   0.196  OXT  9TU  24  
9TU  O    O4   O  0  1  N  N  N  253.436  51.746  144.654   9.568  -1.015  -1.176  O    9TU  25  
9TU  C25  C15  C  0  1  Y  N  N  260.905  47.232  137.393  -3.274   2.489  -1.239  C25  9TU  26  
9TU  C27  C16  C  0  1  Y  N  N  260.803  49.274  136.255  -5.258   1.154  -1.360  C27  9TU  27  
9TU  HD2  H1   H  0  1  N  N  N  255.951  46.325  142.346   3.797  -0.908   0.053  HD2  9TU  28  
9TU  HD3  H2   H  0  1  N  N  N  256.481  47.981  142.798   4.099   0.350  -1.170  HD3  9TU  29  
9TU  HA   H3   H  0  1  N  N  N  254.440  50.197  142.943   7.863  -0.489   1.419  HA   9TU  30  
9TU  H4   H4   H  0  1  N  N  N  261.276  47.431  135.293  -4.762   2.690  -2.761  H4   9TU  31  
9TU  H7   H7   H  0  1  N  N  N  260.103  49.669  139.550  -3.378   0.266   1.296  H7   9TU  32  
9TU  H8   H8   H  0  1  N  N  N  260.089  45.828  139.351  -1.373   3.218   0.428  H8   9TU  33  
9TU  H9   H9   H  0  1  N  N  N  261.614  46.524  139.998  -1.676   1.960   1.651  H9   9TU  34  
9TU  HZ   H10  H  0  1  N  N  N  257.855  48.995  140.560   1.622   0.191  -0.650  HZ   9TU  35  
9TU  HE2  H11  H  0  1  N  N  N  255.527  48.513  140.333   3.096   0.834   1.672  HE2  9TU  36  
9TU  HE3  H12  H  0  1  N  N  N  255.972  46.788  140.098   3.398   2.092   0.449  HE3  9TU  37  
9TU  HG2  H13  H  0  1  N  N  N  253.981  48.513  141.822   5.792   1.387   0.316  HG2  9TU  38  
9TU  HG3  H14  H  0  1  N  N  N  253.734  46.860  142.481   5.489   0.130   1.539  HG3  9TU  39  
9TU  HB2  H15  H  0  1  N  N  N  253.358  48.253  144.373   6.493  -0.355  -1.303  HB2  9TU  40  
9TU  HB3  H16  H  0  1  N  N  N  255.072  47.755  144.570   6.190  -1.613  -0.081  HB3  9TU  41  
9TU  H    H17  H  0  1  N  N  N  256.539  50.870  143.870   8.368   1.158  -0.974  H    9TU  42  
9TU  H2   H18  H  0  1  N  Y  N  256.646  49.488  144.733   7.750   1.695   0.474  H2   9TU  43  
9TU  HXT  H20  H  0  1  N  Y  N  254.282  51.186  146.847   9.515  -3.210  -0.226  HXT  9TU  44  
9TU  H21  H21  H  0  1  N  N  N  261.089  46.168  137.366  -2.651   3.276  -1.637  H21  9TU  45  
9TU  H22  H22  H  0  1  N  N  N  260.875  49.850  135.344  -6.185   0.898  -1.852  H22  9TU  46  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
9TU  N2   N1   DOUB  N  N   1  
9TU  N2   C3   SING  N  N   2  
9TU  N1   C3   SING  N  N   3  
9TU  C26  C27  DOUB  Y  N   4  
9TU  C26  C25  SING  Y  N   5  
9TU  C27  C8   SING  Y  N   6  
9TU  C3   C8   SING  N  N   7  
9TU  C3   C4   SING  N  N   8  
9TU  C25  C10  DOUB  Y  N   9  
9TU  C8   C9   DOUB  Y  N  10  
9TU  F7   C4   SING  N  N  11  
9TU  C4   F6   SING  N  N  12  
9TU  C4   F5   SING  N  N  13  
9TU  C10  C9   SING  Y  N  14  
9TU  C10  C11  SING  N  N  15  
9TU  C11  O12  SING  N  N  16  
9TU  NZ   CE   SING  N  N  17  
9TU  NZ   C13  SING  N  N  18  
9TU  CE   CD   SING  N  N  19  
9TU  C13  O14  DOUB  N  N  20  
9TU  C13  O12  SING  N  N  21  
9TU  CD   CG   SING  N  N  22  
9TU  CG   CB   SING  N  N  23  
9TU  CA   N    SING  N  N  24  
9TU  CA   CB   SING  N  N  25  
9TU  CA   C    SING  N  N  26  
9TU  O    C    DOUB  N  N  27  
9TU  C    OXT  SING  N  N  28  
9TU  CD   HD2  SING  N  N  29  
9TU  CD   HD3  SING  N  N  30  
9TU  CA   HA   SING  N  N  31  
9TU  C26  H4   SING  N  N  32  
9TU  C9   H7   SING  N  N  33  
9TU  C11  H8   SING  N  N  34  
9TU  C11  H9   SING  N  N  35  
9TU  NZ   HZ   SING  N  N  36  
9TU  CE   HE2  SING  N  N  37  
9TU  CE   HE3  SING  N  N  38  
9TU  CG   HG2  SING  N  N  39  
9TU  CG   HG3  SING  N  N  40  
9TU  CB   HB2  SING  N  N  41  
9TU  CB   HB3  SING  N  N  42  
9TU  N    H    SING  N  N  43  
9TU  N    H2   SING  N  N  44  
9TU  OXT  HXT  SING  N  N  45  
9TU  C25  H21  SING  N  N  46  
9TU  C27  H22  SING  N  N  47  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
9TU  SMILES            ACDLabs               12.01  "c2(cc(C1(N=N1)C(F)(F)F)ccc2)COC(=O)NCCCCC(N)C(O)=O"  
9TU  InChI             InChI                 1.03   "InChI=1S/C16H19F3N4O4/c17-16(18,19)15(22-23-15)11-5-3-4-10(8-11)9-27-14(26)21-7-2-1-6-12(20)13(24)25/h3-5,8,12H,1-2,6-7,9,20H2,(H,21,26)(H,24,25)/t12-/m0/s1"  
9TU  InChIKey          InChI                 1.03   JHAONYPOHPLZAQ-LBPRGKRZSA-N  
9TU  SMILES_CANONICAL  CACTVS                3.385  "N[C@@H](CCCCNC(=O)OCc1cccc(c1)C2(N=N2)C(F)(F)F)C(O)=O"  
9TU  SMILES            CACTVS                3.385  "N[CH](CCCCNC(=O)OCc1cccc(c1)C2(N=N2)C(F)(F)F)C(O)=O"  
9TU  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "c1cc(cc(c1)C2(N=N2)C(F)(F)F)COC(=O)NCCCC[C@@H](C(=O)O)N"  
9TU  SMILES            "OpenEye OEToolkits"  2.0.6  "c1cc(cc(c1)C2(N=N2)C(F)(F)F)COC(=O)NCCCCC(C(=O)O)N"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
9TU  "SYSTEMATIC NAME"  ACDLabs               12.01  "N~6~-[({3-[3-(trifluoromethyl)-3H-diaziren-3-yl]phenyl}methoxy)carbonyl]-L-lysine"  
9TU  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "(2~{S})-2-azanyl-6-[[3-[3-(trifluoromethyl)-1,2-diazirin-3-yl]phenyl]methoxycarbonylamino]hexanoic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
9TU  "Create component"  2018-07-31  PDBJ  
9TU  "Initial release"   2019-04-17  RCSB  
##
