data_8KU
#

_chem_comp.id                                   8KU
_chem_comp.name                                 "2-[(2S)-1-{[(2-chlorophenyl)sulfanyl]acetyl}pyrrolidin-2-yl]-N-{[(2S)-2,3-dihydro-1-benzofuran-2-yl]methyl}-5-hydroxy-6-oxo-1,6-dihydropyrimidine-4-carboxamide"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C26 H25 Cl N4 O5 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        SRI-30027
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2017-07-11
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       541.018
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    8KU
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5WDW
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
8KU  C1   C1   C   0  1  N  N  N  29.835  447.410  697.657  -0.141   3.736   1.346  C1   8KU   1  
8KU  C10  C2   C   0  1  Y  N  N  31.564  448.761  689.271   8.870  -3.115  -1.373  C10  8KU   2  
8KU  C11  C3   C   0  1  Y  N  N  30.712  449.478  690.100   8.094  -3.299  -0.242  C11  8KU   3  
8KU  C12  C4   C   0  1  Y  N  N  31.279  450.222  691.125   7.035  -2.456   0.011  C12  8KU   4  
8KU  C13  C5   C   0  1  N  N  N  30.662  451.096  692.184   6.012  -2.412   1.130  C13  8KU   5  
8KU  C14  C6   C   0  1  N  N  N  31.933  447.101  696.535   0.057   2.327  -0.518  C14  8KU   6  
8KU  C15  C7   C   0  1  N  N  S  33.144  446.246  696.224  -0.433   1.926  -1.885  C15  8KU   7  
8KU  C16  C8   C   0  1  N  N  N  33.761  446.391  693.783  -2.272   0.418  -1.089  C16  8KU   8  
8KU  C17  C9   C   0  1  N  N  N  32.412  446.667  693.151  -3.716  -0.004  -1.184  C17  8KU   9  
8KU  C18  C10  C   0  1  Y  N  N  30.453  444.634  693.687  -5.771  -1.598  -0.151  C18  8KU  10  
8KU  C19  C11  C   0  1  Y  N  N  30.548  443.308  694.115  -6.497  -0.904  -1.110  C19  8KU  11  
8KU  C2   C12  C   0  1  N  N  N  29.805  448.692  697.116   0.975   3.002   1.954  C2   8KU  12  
8KU  C20  C13  C   0  1  Y  N  N  29.687  442.829  695.085  -7.858  -1.110  -1.226  C20  8KU  13  
8KU  C21  C14  C   0  1  Y  N  N  28.728  443.653  695.631  -8.498  -2.004  -0.389  C21  8KU  14  
8KU  C22  C15  C   0  1  Y  N  N  28.617  444.962  695.218  -7.779  -2.697   0.569  C22  8KU  15  
8KU  C23  C16  C   0  1  Y  N  N  29.472  445.448  694.248  -6.417  -2.497   0.690  C23  8KU  16  
8KU  C24  C17  C   0  1  N  N  N  35.094  447.472  695.575  -2.665   2.362  -2.629  C24  8KU  17  
8KU  C25  C18  C   0  1  N  N  N  35.507  446.600  696.726  -1.692   2.961  -3.675  C25  8KU  18  
8KU  C26  C19  C   0  1  N  N  N  34.168  446.274  697.380  -0.402   3.143  -2.832  C26  8KU  19  
8KU  C3   C20  C   0  1  N  N  N  30.833  449.119  696.325   1.536   1.964   1.227  C3   8KU  20  
8KU  C4   C21  C   0  1  N  N  N  30.810  450.502  695.733   2.664   1.185   1.787  C4   8KU  21  
8KU  C5   C22  C   0  1  N  N  N  31.922  452.064  694.219   4.317  -0.598   1.622  C5   8KU  22  
8KU  C6   C23  C   0  1  N  N  S  31.892  451.838  692.720   4.927  -1.485   0.535  C6   8KU  23  
8KU  C7   C24  C   0  1  Y  N  N  32.653  450.242  691.289   6.736  -1.411  -0.855  C7   8KU  24  
8KU  C8   C25  C   0  1  Y  N  N  33.515  449.525  690.483   7.519  -1.235  -1.992  C8   8KU  25  
8KU  C9   C26  C   0  1  Y  N  N  32.939  448.788  689.464   8.577  -2.083  -2.246  C9   8KU  26  
8KU  N1   N1   N   0  1  N  N  N  31.849  450.816  694.963   3.274   0.247   1.035  N1   8KU  27  
8KU  N2   N2   N   0  1  N  N  N  31.890  448.342  696.043   1.047   1.669   0.009  N2   8KU  28  
8KU  N3   N3   N   0  1  N  N  N  33.957  446.697  695.079  -1.829   1.472  -1.803  N3   8KU  29  
8KU  N4   N4   N   0  1  N  N  N  30.931  446.633  697.347  -0.558   3.353   0.119  N4   8KU  30  
8KU  O1   O1   O   0  1  N  N  N  28.940  446.951  698.382  -0.679   4.660   1.932  O1   8KU  31  
8KU  O2   O2   O   0  1  N  N  N  28.737  449.440  697.420   1.442   3.329   3.185  O2   8KU  32  
8KU  O3   O3   O   0  1  N  N  N  33.049  451.009  692.344   5.667  -0.695  -0.411  O3   8KU  33  
8KU  O4   O4   O   0  1  N  N  N  29.870  451.269  695.935   3.041   1.392   2.924  O4   8KU  34  
8KU  O5   O5   O   0  1  N  N  N  34.664  445.891  693.117  -1.508  -0.191  -0.370  O5   8KU  35  
8KU  S1   S1   S   0  1  N  N  N  31.560  445.227  692.442  -4.033  -1.344  -0.004  S1   8KU  36  
8KU  CL1  CL1  CL  0  0  N  N  N  29.296  447.098  693.753  -5.515  -3.367   1.891  CL1  8KU  37  
8KU  H1   H1   H   0  1  N  N  N  31.151  448.174  688.464   9.703  -3.772  -1.571  H1   8KU  38  
8KU  H2   H2   H   0  1  N  N  N  29.642  449.457  689.952   8.319  -4.104   0.442  H2   8KU  39  
8KU  H3   H3   H   0  1  N  N  N  29.928  451.793  691.753   5.610  -3.406   1.328  H3   8KU  40  
8KU  H4   H4   H   0  1  N  N  N  30.180  450.496  692.970   6.442  -1.980   2.033  H4   8KU  41  
8KU  H5   H5   H   0  1  N  N  N  32.821  445.207  696.063   0.195   1.129  -2.284  H5   8KU  42  
8KU  H6   H6   H   0  1  N  N  N  32.561  447.401  692.346  -4.358   0.845  -0.951  H6   8KU  43  
8KU  H7   H7   H   0  1  N  N  N  31.759  447.098  693.924  -3.926  -0.352  -2.195  H7   8KU  44  
8KU  H8   H8   H   0  1  N  N  N  31.295  442.656  693.688  -5.998  -0.205  -1.765  H8   8KU  45  
8KU  H9   H9   H   0  1  N  N  N  29.767  441.804  695.416  -8.423  -0.571  -1.972  H9   8KU  46  
8KU  H10  H10  H   0  1  N  N  N  28.059  443.270  696.388  -9.562  -2.163  -0.482  H10  8KU  47  
8KU  H11  H11  H   0  1  N  N  N  27.865  445.606  695.650  -8.282  -3.394   1.222  H11  8KU  48  
8KU  H12  H12  H   0  1  N  N  N  35.890  447.560  694.821  -3.097   3.153  -2.016  H12  8KU  49  
8KU  H13  H13  H   0  1  N  N  N  34.792  448.476  695.909  -3.452   1.794  -3.125  H13  8KU  50  
8KU  H14  H14  H   0  1  N  N  N  36.012  445.688  696.374  -1.526   2.265  -4.498  H14  8KU  51  
8KU  H15  H15  H   0  1  N  N  N  36.168  447.141  697.419  -2.056   3.920  -4.044  H15  8KU  52  
8KU  H16  H16  H   0  1  N  N  N  33.899  447.048  698.114  -0.440   4.074  -2.266  H16  8KU  53  
8KU  H17  H17  H   0  1  N  N  N  34.212  445.295  697.879   0.482   3.114  -3.469  H17  8KU  54  
8KU  H18  H18  H   0  1  N  N  N  32.858  452.579  694.481   3.881  -1.224   2.401  H18  8KU  55  
8KU  H19  H19  H   0  1  N  N  N  31.066  452.695  694.500   5.094   0.032   2.055  H19  8KU  56  
8KU  H20  H20  H   0  1  N  N  N  31.961  452.812  692.214   4.153  -2.067   0.035  H20  8KU  57  
8KU  H21  H21  H   0  1  N  N  N  34.583  449.539  690.640   7.297  -0.431  -2.679  H21  8KU  58  
8KU  H22  H22  H   0  1  N  N  N  33.575  448.219  688.802   9.180  -1.941  -3.130  H22  8KU  59  
8KU  H23  H23  H   0  1  N  N  N  32.609  450.169  694.893   3.022   0.132   0.106  H23  8KU  60  
8KU  H24  H24  H   0  1  N  N  N  30.997  445.708  697.722  -1.293   3.818  -0.310  H24  8KU  61  
8KU  H25  H25  H   0  1  N  N  N  28.813  450.288  696.999   0.977   4.068   3.599  H25  8KU  62  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
8KU  C10  C9   DOUB  Y  N   1  
8KU  C10  C11  SING  Y  N   2  
8KU  C9   C8   SING  Y  N   3  
8KU  C11  C12  DOUB  Y  N   4  
8KU  C8   C7   DOUB  Y  N   5  
8KU  C12  C7   SING  Y  N   6  
8KU  C12  C13  SING  N  N   7  
8KU  C7   O3   SING  N  N   8  
8KU  C13  C6   SING  N  N   9  
8KU  O3   C6   SING  N  N  10  
8KU  S1   C17  SING  N  N  11  
8KU  S1   C18  SING  N  N  12  
8KU  C6   C5   SING  N  N  13  
8KU  O5   C16  DOUB  N  N  14  
8KU  C17  C16  SING  N  N  15  
8KU  C18  C19  DOUB  Y  N  16  
8KU  C18  C23  SING  Y  N  17  
8KU  CL1  C23  SING  N  N  18  
8KU  C16  N3   SING  N  N  19  
8KU  C19  C20  SING  Y  N  20  
8KU  C5   N1   SING  N  N  21  
8KU  C23  C22  DOUB  Y  N  22  
8KU  N1   C4   SING  N  N  23  
8KU  N3   C24  SING  N  N  24  
8KU  N3   C15  SING  N  N  25  
8KU  C20  C21  DOUB  Y  N  26  
8KU  C22  C21  SING  Y  N  27  
8KU  C24  C25  SING  N  N  28  
8KU  C4   O4   DOUB  N  N  29  
8KU  C4   C3   SING  N  N  30  
8KU  N2   C3   SING  N  N  31  
8KU  N2   C14  DOUB  N  N  32  
8KU  C15  C14  SING  N  N  33  
8KU  C15  C26  SING  N  N  34  
8KU  C3   C2   DOUB  N  N  35  
8KU  C14  N4   SING  N  N  36  
8KU  C25  C26  SING  N  N  37  
8KU  C2   O2   SING  N  N  38  
8KU  C2   C1   SING  N  N  39  
8KU  N4   C1   SING  N  N  40  
8KU  C1   O1   DOUB  N  N  41  
8KU  C10  H1   SING  N  N  42  
8KU  C11  H2   SING  N  N  43  
8KU  C13  H3   SING  N  N  44  
8KU  C13  H4   SING  N  N  45  
8KU  C15  H5   SING  N  N  46  
8KU  C17  H6   SING  N  N  47  
8KU  C17  H7   SING  N  N  48  
8KU  C19  H8   SING  N  N  49  
8KU  C20  H9   SING  N  N  50  
8KU  C21  H10  SING  N  N  51  
8KU  C22  H11  SING  N  N  52  
8KU  C24  H12  SING  N  N  53  
8KU  C24  H13  SING  N  N  54  
8KU  C25  H14  SING  N  N  55  
8KU  C25  H15  SING  N  N  56  
8KU  C26  H16  SING  N  N  57  
8KU  C26  H17  SING  N  N  58  
8KU  C5   H18  SING  N  N  59  
8KU  C5   H19  SING  N  N  60  
8KU  C6   H20  SING  N  N  61  
8KU  C8   H21  SING  N  N  62  
8KU  C9   H22  SING  N  N  63  
8KU  N1   H23  SING  N  N  64  
8KU  N4   H24  SING  N  N  65  
8KU  O2   H25  SING  N  N  66  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
8KU  SMILES            ACDLabs               12.01  "C3(=O)C(O)=C(C(=O)NCC2Cc1ccccc1O2)N=C(N3)C4CCCN4C(CSc5ccccc5Cl)=O"  
8KU  InChI             InChI                 1.03   "InChI=1S/C26H25ClN4O5S/c27-17-7-2-4-10-20(17)37-14-21(32)31-11-5-8-18(31)24-29-22(23(33)26(35)30-24)25(34)28-13-16-12-15-6-1-3-9-19(15)36-16/h1-4,6-7,9-10,16,18,33H,5,8,11-14H2,(H,28,34)(H,29,30,35)/t16-,18-/m0/s1"  
8KU  InChIKey          InChI                 1.03   DAFZALMPATYNDF-WMZOPIPTSA-N  
8KU  SMILES_CANONICAL  CACTVS                3.385  "OC1=C(N=C(NC1=O)[C@@H]2CCCN2C(=O)CSc3ccccc3Cl)C(=O)NC[C@@H]4Cc5ccccc5O4"  
8KU  SMILES            CACTVS                3.385  "OC1=C(N=C(NC1=O)[CH]2CCCN2C(=O)CSc3ccccc3Cl)C(=O)NC[CH]4Cc5ccccc5O4"  
8KU  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "c1ccc2c(c1)C[C@H](O2)CNC(=O)C3=C(C(=O)NC(=N3)[C@@H]4CCCN4C(=O)CSc5ccccc5Cl)O"  
8KU  SMILES            "OpenEye OEToolkits"  2.0.6  "c1ccc2c(c1)CC(O2)CNC(=O)C3=C(C(=O)NC(=N3)C4CCCN4C(=O)CSc5ccccc5Cl)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
8KU  "SYSTEMATIC NAME"  ACDLabs               12.01  "2-[(2S)-1-{[(2-chlorophenyl)sulfanyl]acetyl}pyrrolidin-2-yl]-N-{[(2S)-2,3-dihydro-1-benzofuran-2-yl]methyl}-5-hydroxy-6-oxo-1,6-dihydropyrimidine-4-carboxamide"  
8KU  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "2-[(2~{S})-1-[2-(2-chlorophenyl)sulfanylethanoyl]pyrrolidin-2-yl]-~{N}-[[(2~{S})-2,3-dihydro-1-benzofuran-2-yl]methyl]-5-oxidanyl-6-oxidanylidene-1~{H}-pyrimidine-4-carboxamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
8KU  "Create component"  2017-07-11  RCSB  
8KU  "Initial release"   2018-01-03  RCSB  
8KU  "Modify synonyms"   2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     8KU
_pdbx_chem_comp_synonyms.name        SRI-30027
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
