data_85U
# 
_chem_comp.id                                    85U 
_chem_comp.name                                  "methyl 6-[4-[[~{N}-[(~{E})-3-[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]prop-2-enyl]carbamimidoyl]amino]butylcarbamoylamino]-4-oxidanyl-naphthalene-2-carboxylate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C30 H36 N10 O7" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-10-04 
_chem_comp.pdbx_modified_date                    2022-08-22 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        648.670 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     85U 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7PUC 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
85U C1  C1  C 0 1 Y N N 42.359 24.847 126.567 12.340  1.429  -0.327 C1  85U 1  
85U C10 C2  C 0 1 Y N N 43.790 24.874 130.021 8.811   1.027  -1.377 C10 85U 2  
85U C11 C3  C 0 1 N N N 41.082 24.602 125.839 13.505  2.287  -0.615 C11 85U 3  
85U C12 C4  C 0 1 N N N 38.844 25.011 126.465 15.774  2.963  -0.302 C12 85U 4  
85U C13 C5  C 0 1 N N N 48.518 26.152 130.040 5.511   -1.088 0.082  C13 85U 5  
85U C14 C6  C 0 1 N N N 50.972 26.088 130.249 3.088   -1.327 0.185  C14 85U 6  
85U C15 C7  C 0 1 N N N 51.345 27.519 130.594 2.062   -2.443 0.394  C15 85U 7  
85U C16 C8  C 0 1 N N N 51.919 27.654 131.990 0.651   -1.855 0.336  C16 85U 8  
85U C17 C9  C 0 1 N N N 52.578 31.258 131.431 -2.819  -3.226 0.651  C17 85U 9  
85U C18 C10 C 0 1 N N N 51.293 34.976 130.807 -7.441  -3.080 -0.193 C18 85U 10 
85U C19 C11 C 0 1 N N R 51.024 36.172 131.623 -8.702  -2.261 -0.294 C19 85U 11 
85U C2  C12 C 0 1 Y N N 43.484 25.194 125.818 12.449  0.400  0.627  C2  85U 12 
85U C20 C13 C 0 1 N N S 49.541 36.385 131.951 -8.916  -1.779 -1.746 C20 85U 13 
85U C21 C14 C 0 1 N N R 49.079 37.136 130.703 -9.498  -0.357 -1.588 C21 85U 14 
85U C22 C15 C 0 1 N N R 50.260 38.089 130.519 -9.567  -0.147 -0.059 C22 85U 15 
85U C23 C16 C 0 1 Y N N 50.498 37.845 128.008 -8.007  1.708  0.646  C23 85U 16 
85U C24 C17 C 0 1 Y N N 50.678 39.863 127.380 -9.341  3.417  0.684  C24 85U 17 
85U C25 C18 C 0 1 Y N N 50.818 41.099 126.722 -9.988  4.661  0.780  C25 85U 18 
85U C26 C19 C 0 1 Y N N 50.688 42.097 128.806 -11.957 3.648  0.127  C26 85U 19 
85U C27 C20 C 0 1 Y N N 50.553 39.897 128.760 -10.101 2.303  0.291  C27 85U 20 
85U C28 C21 C 0 1 N N N 52.689 28.936 132.225 -0.375  -2.971 0.545  C28 85U 21 
85U C29 C22 C 0 1 N N N 52.710 33.168 129.857 -5.252  -3.570 0.771  C29 85U 22 
85U C3  C23 C 0 1 Y N N 44.686 25.432 126.437 11.386  -0.400 0.913  C3  85U 23 
85U C30 C24 C 0 1 N N N 52.455 34.375 130.705 -6.513  -2.751 0.671  C30 85U 24 
85U C4  C25 C 0 1 Y N N 44.817 25.331 127.852 10.156  -0.202 0.248  C4  85U 25 
85U C5  C26 C 0 1 Y N N 43.667 24.978 128.614 10.037  0.832  -0.715 C5  85U 26 
85U C6  C27 C 0 1 Y N N 42.447 24.742 127.938 11.145  1.646  -0.995 C6  85U 27 
85U C7  C28 C 0 1 Y N N 46.037 25.568 128.534 9.047   -1.015 0.525  C7  85U 28 
85U C8  C29 C 0 1 Y N N 46.122 25.459 129.906 7.860   -0.797 -0.141 C8  85U 29 
85U C9  C30 C 0 1 Y N N 44.986 25.107 130.639 7.751   0.226  -1.090 C9  85U 30 
85U N1  N1  N 0 1 N N N 47.342 25.698 130.586 6.754   -1.606 0.134  N1  85U 31 
85U N10 N2  N 0 1 Y N N 50.545 40.986 129.534 -11.393 2.463  0.025  N10 85U 32 
85U N2  N3  N 0 1 N N N 49.629 25.728 130.685 4.440   -1.890 0.242  N2  85U 33 
85U N3  N4  N 0 1 N N N 51.969 30.097 131.734 -1.727  -2.408 0.488  N3  85U 34 
85U N4  N5  N 0 1 N N N 52.051 32.007 130.434 -4.088  -2.698 0.598  N4  85U 35 
85U N5  N6  N 0 1 N N N 53.635 31.676 132.063 -2.653  -4.503 0.855  N5  85U 36 
85U N6  N7  N 0 1 Y N N 50.435 38.588 129.158 -9.234  1.239  0.281  N6  85U 37 
85U N7  N8  N 0 1 Y N N 50.640 38.557 126.917 -8.072  2.986  0.882  N7  85U 38 
85U N8  N9  N 0 1 N N N 50.955 41.227 125.397 -9.291  5.794  1.162  N8  85U 39 
85U N9  N10 N 0 1 Y N N 50.816 42.218 127.481 -11.284 4.724  0.493  N9  85U 40 
85U O1  O1  O 0 1 N N N 45.811 25.773 125.748 11.508  -1.389 1.836  O1  85U 41 
85U O2  O2  O 0 1 N N N 40.080 24.281 126.659 14.670  2.081  0.031  O2  85U 42 
85U O3  O3  O 0 1 N N N 40.958 24.681 124.642 13.415  3.179  -1.434 O3  85U 43 
85U O4  O4  O 0 1 N N N 48.569 26.887 129.055 5.356   0.103  -0.108 O4  85U 44 
85U O5  O5  O 0 1 N N N 49.385 37.126 133.160 -9.845  -2.628 -2.423 O5  85U 45 
85U O6  O6  O 0 1 N N N 47.839 37.817 130.883 -10.804 -0.284 -2.162 O6  85U 46 
85U O7  O7  O 0 1 N N N 51.411 37.349 130.884 -8.577  -1.049 0.482  O7  85U 47 
85U H5  H1  H 0 1 N N N 42.927 24.607 130.613 8.712   1.813  -2.112 H5  85U 48 
85U H9  H2  H 0 1 N N N 38.095 24.664 127.192 16.649  2.689  0.288  H9  85U 49 
85U H10 H3  H 0 1 N N N 39.026 26.086 126.611 16.007  2.869  -1.363 H10 85U 50 
85U H8  H4  H 0 1 N N N 38.472 24.837 125.444 15.495  3.993  -0.082 H8  85U 51 
85U H12 H5  H 0 1 N N N 51.031 25.964 129.158 2.928   -0.864 -0.788 H12 85U 52 
85U H13 H6  H 0 1 N N N 51.691 25.412 130.734 2.974   -0.577 0.968  H13 85U 53 
85U H15 H7  H 0 1 N N N 52.094 27.872 129.870 2.176   -3.193 -0.388 H15 85U 54 
85U H14 H8  H 0 1 N N N 50.443 28.145 130.522 2.223   -2.906 1.368  H14 85U 55 
85U H17 H9  H 0 1 N N N 51.088 27.614 132.710 0.537   -1.105 1.118  H17 85U 56 
85U H16 H10 H 0 1 N N N 52.598 26.807 132.167 0.490   -1.392 -0.638 H16 85U 57 
85U H21 H11 H 0 1 N N N 50.468 34.560 130.248 -7.303  -3.939 -0.833 H21 85U 58 
85U H22 H12 H 0 1 N N N 51.591 36.113 132.564 -9.560  -2.842 0.044  H22 85U 59 
85U H1  H13 H 0 1 N N N 43.409 25.276 124.744 13.388  0.244  1.138  H1  85U 60 
85U H23 H14 H 0 1 N N N 49.031 35.412 132.011 -7.967  -1.749 -2.282 H23 85U 61 
85U H25 H15 H 0 1 N N N 49.029 36.441 129.851 -8.838  0.379  -2.047 H25 85U 62 
85U H27 H16 H 0 1 N N N 50.129 38.940 131.204 -10.558 -0.403 0.315  H27 85U 63 
85U H28 H17 H 0 1 N N N 50.436 36.767 128.001 -7.114  1.106  0.730  H28 85U 64 
85U H31 H18 H 0 1 N N N 50.702 43.022 129.363 -13.009 3.744  -0.097 H31 85U 65 
85U H33 H19 H 0 1 N N N 53.656 28.871 131.705 -0.261  -3.721 -0.238 H33 85U 66 
85U H32 H20 H 0 1 N N N 52.861 29.055 133.305 -0.215  -3.434 1.518  H32 85U 67 
85U H34 H21 H 0 1 N N N 53.793 32.983 129.803 -5.206  -4.048 1.750  H34 85U 68 
85U H35 H22 H 0 1 N N N 52.317 33.344 128.845 -5.253  -4.334 -0.006 H35 85U 69 
85U H36 H23 H 0 1 N N N 53.282 34.778 131.270 -6.651  -1.892 1.311  H36 85U 70 
85U H2  H24 H 0 1 N N N 41.569 24.475 128.507 11.066  2.439  -1.723 H2  85U 71 
85U H3  H25 H 0 1 N N N 46.916 25.839 127.968 9.123   -1.806 1.256  H3  85U 72 
85U H4  H26 H 0 1 N N N 45.054 25.017 131.713 6.812   0.381  -1.601 H4  85U 73 
85U H7  H27 H 0 1 N N N 47.348 25.517 131.569 6.881   -2.540 0.362  H7  85U 74 
85U H11 H28 H 0 1 N N N 49.525 25.146 131.491 4.563   -2.840 0.393  H11 85U 75 
85U H18 H29 H 0 1 N N N 50.978 30.031 131.616 -1.851  -1.458 0.337  H18 85U 76 
85U H19 H30 H 0 1 N N N 51.156 31.747 130.073 -4.212  -1.748 0.446  H19 85U 77 
85U H20 H31 H 0 1 N N N 53.921 31.038 132.778 -1.758  -4.876 0.892  H20 85U 78 
85U H30 H32 H 0 1 N N N 51.040 42.195 125.162 -8.345  5.735  1.368  H30 85U 79 
85U H29 H33 H 0 1 N N N 51.775 40.738 125.098 -9.749  6.647  1.224  H29 85U 80 
85U H6  H34 H 0 1 N N N 46.531 25.893 126.356 11.291  -1.114 2.738  H6  85U 81 
85U H24 H35 H 0 1 N N N 49.690 36.604 133.893 -9.556  -3.548 -2.496 H24 85U 82 
85U H26 H36 H 0 1 N N N 47.141 37.182 130.992 -10.828 -0.468 -3.112 H26 85U 83 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
85U O3  C11 DOUB N N 1  
85U N8  C25 SING N N 2  
85U O1  C3  SING N N 3  
85U C2  C3  DOUB Y N 4  
85U C2  C1  SING Y N 5  
85U C11 C1  SING N N 6  
85U C11 O2  SING N N 7  
85U C3  C4  SING Y N 8  
85U C12 O2  SING N N 9  
85U C1  C6  DOUB Y N 10 
85U C25 C24 DOUB Y N 11 
85U C25 N9  SING Y N 12 
85U N7  C24 SING Y N 13 
85U N7  C23 DOUB Y N 14 
85U C24 C27 SING Y N 15 
85U N9  C26 DOUB Y N 16 
85U C4  C7  DOUB Y N 17 
85U C4  C5  SING Y N 18 
85U C6  C5  SING Y N 19 
85U C23 N6  SING Y N 20 
85U C7  C8  SING Y N 21 
85U C5  C10 DOUB Y N 22 
85U C27 N6  SING Y N 23 
85U C27 N10 DOUB Y N 24 
85U C26 N10 SING Y N 25 
85U O4  C13 DOUB N N 26 
85U N6  C22 SING N N 27 
85U C29 N4  SING N N 28 
85U C29 C30 SING N N 29 
85U C8  N1  SING N N 30 
85U C8  C9  DOUB Y N 31 
85U C10 C9  SING Y N 32 
85U C13 N1  SING N N 33 
85U C13 N2  SING N N 34 
85U C14 C15 SING N N 35 
85U C14 N2  SING N N 36 
85U N4  C17 SING N N 37 
85U C22 C21 SING N N 38 
85U C22 O7  SING N N 39 
85U C15 C16 SING N N 40 
85U C21 O6  SING N N 41 
85U C21 C20 SING N N 42 
85U C30 C18 DOUB N E 43 
85U C18 C19 SING N N 44 
85U O7  C19 SING N N 45 
85U C17 N3  SING N N 46 
85U C17 N5  DOUB N N 47 
85U C19 C20 SING N N 48 
85U N3  C28 SING N N 49 
85U C20 O5  SING N N 50 
85U C16 C28 SING N N 51 
85U C10 H5  SING N N 52 
85U C12 H9  SING N N 53 
85U C12 H10 SING N N 54 
85U C12 H8  SING N N 55 
85U C14 H12 SING N N 56 
85U C14 H13 SING N N 57 
85U C15 H15 SING N N 58 
85U C15 H14 SING N N 59 
85U C16 H17 SING N N 60 
85U C16 H16 SING N N 61 
85U C18 H21 SING N N 62 
85U C19 H22 SING N N 63 
85U C2  H1  SING N N 64 
85U C20 H23 SING N N 65 
85U C21 H25 SING N N 66 
85U C22 H27 SING N N 67 
85U C23 H28 SING N N 68 
85U C26 H31 SING N N 69 
85U C28 H33 SING N N 70 
85U C28 H32 SING N N 71 
85U C29 H34 SING N N 72 
85U C29 H35 SING N N 73 
85U C30 H36 SING N N 74 
85U C6  H2  SING N N 75 
85U C7  H3  SING N N 76 
85U C9  H4  SING N N 77 
85U N1  H7  SING N N 78 
85U N2  H11 SING N N 79 
85U N3  H18 SING N N 80 
85U N4  H19 SING N N 81 
85U N5  H20 SING N N 82 
85U N8  H30 SING N N 83 
85U N8  H29 SING N N 84 
85U O1  H6  SING N N 85 
85U O5  H24 SING N N 86 
85U O6  H26 SING N N 87 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
85U InChI            InChI                1.06  "InChI=1S/C30H36N10O7/c1-46-28(44)17-11-16-6-7-18(13-19(16)20(41)12-17)39-30(45)35-9-3-2-8-33-29(32)34-10-4-5-21-23(42)24(43)27(47-21)40-15-38-22-25(31)36-14-37-26(22)40/h4-7,11-15,21,23-24,27,41-43H,2-3,8-10H2,1H3,(H2,31,36,37)(H3,32,33,34)(H2,35,39,45)/b5-4+/t21-,23-,24-,27-/m1/s1" 
85U InChIKey         InChI                1.06  JYIRWTZMMGLPFI-HMZLUZKYSA-N                                                                                                                                                                                                                                                                  
85U SMILES_CANONICAL CACTVS               3.385 "COC(=O)c1cc(O)c2cc(NC(=O)NCCCCNC(=N)NC\C=C\[C@H]3O[C@H]([C@H](O)[C@@H]3O)n4cnc5c(N)ncnc45)ccc2c1"                                                                                                                                                                                           
85U SMILES           CACTVS               3.385 "COC(=O)c1cc(O)c2cc(NC(=O)NCCCCNC(=N)NCC=C[CH]3O[CH]([CH](O)[CH]3O)n4cnc5c(N)ncnc45)ccc2c1"                                                                                                                                                                                                  
85U SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(\NCCCCNC(=O)Nc1ccc2cc(cc(c2c1)O)C(=O)OC)/NC/C=C/[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)O)O"                                                                                                                                                                                    
85U SMILES           "OpenEye OEToolkits" 2.0.7 "COC(=O)c1cc2ccc(cc2c(c1)O)NC(=O)NCCCCNC(=N)NCC=CC3C(C(C(O3)n4cnc5c4ncnc5N)O)O"                                                                                                                                                                                                              
# 
_pdbx_chem_comp_identifier.comp_id           85U 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "methyl 6-[4-[[~{N}-[(~{E})-3-[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]prop-2-enyl]carbamimidoyl]amino]butylcarbamoylamino]-4-oxidanyl-naphthalene-2-carboxylate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
85U "Create component"  2021-10-04 PDBE 
85U "Initial release"   2022-04-06 RCSB 
85U "Modify descriptor" 2022-08-22 RCSB 
# 
