data_6VU
# 
_chem_comp.id                                    6VU 
_chem_comp.name                                  "1-(4-methoxybutyl)-~{N}-(2-methylpropyl)-~{N}-[(3~{S},5~{R})-5-morpholin-4-ylcarbonylpiperidin-3-yl]benzimidazole-2-carboxamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C27 H41 N5 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-07-06 
_chem_comp.pdbx_modified_date                    2017-06-30 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        499.646 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     6VU 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5KOT 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
6VU C4  C1  C 0 1 N N N -21.237 -34.573 -9.217  -2.219 3.901  0.577  C4  6VU 1  
6VU C5  C2  C 0 1 N N N -22.135 -34.576 -10.456 -2.661 2.542  0.031  C5  6VU 2  
6VU C6  C3  C 0 1 N N N -23.109 -33.393 -10.373 -3.006 1.612  1.196  C6  6VU 3  
6VU C8  C4  C 0 1 Y N N -25.142 -33.707 -11.856 -2.619 -0.765 0.412  C8  6VU 4  
6VU C10 C5  C 0 1 Y N N -24.405 -33.034 -13.773 -4.630 -1.391 -0.114 C10 6VU 5  
6VU C13 C6  C 0 1 Y N N -21.929 -32.023 -14.582 -7.077 -0.090 -0.018 C13 6VU 6  
6VU C15 C7  C 0 1 Y N N -23.348 -32.886 -12.842 -4.713 -0.064 0.353  C15 6VU 7  
6VU C20 C8  C 0 1 N N N -25.182 -36.724 -12.696 -1.281 -3.056 -1.602 C20 6VU 8  
6VU C21 C9  C 0 1 N N N -24.534 -37.797 -11.822 0.114  -3.144 -2.224 C21 6VU 9  
6VU C22 C10 C 0 1 N N N -25.390 -37.228 -14.130 -2.138 -4.219 -2.107 C22 6VU 10 
6VU C28 C11 C 0 1 N N R -29.810 -36.631 -9.158  3.171  -0.912 0.281  C28 6VU 11 
6VU C1  C12 C 0 1 N N N -20.114 -35.984 -6.683  -1.116 7.048  -1.090 C1  6VU 12 
6VU O2  O1  O 0 1 N N N -19.598 -35.963 -8.028  -1.462 6.101  -0.079 O2  6VU 13 
6VU C3  C13 C 0 1 N N N -20.585 -35.953 -9.067  -1.875 4.831  -0.589 C3  6VU 14 
6VU N7  N1  N 0 1 Y N N -23.844 -33.330 -11.641 -3.428 0.310  0.673  N7  6VU 15 
6VU N9  N2  N 0 1 Y N N -25.465 -33.532 -13.114 -3.338 -1.757 -0.050 N9  6VU 16 
6VU C11 C14 C 0 1 Y N N -24.197 -32.657 -15.112 -5.798 -2.049 -0.524 C11 6VU 17 
6VU C12 C15 C 0 1 Y N N -22.972 -32.171 -15.497 -6.997 -1.400 -0.473 C12 6VU 18 
6VU C14 C16 C 0 1 Y N N -22.107 -32.372 -13.251 -5.945 0.577  0.398  C14 6VU 19 
6VU C16 C17 C 0 1 N N N -26.017 -34.275 -10.800 -1.154 -0.797 0.615  C16 6VU 20 
6VU O17 O2  O 0 1 N N N -26.126 -33.656 -9.759  -0.566 0.210  0.958  O17 6VU 21 
6VU N18 N3  N 0 1 N N N -26.635 -35.477 -10.938 -0.472 -1.942 0.419  N18 6VU 22 
6VU C19 C18 C 0 1 N N N -26.571 -36.297 -12.185 -1.166 -3.132 -0.078 C19 6VU 23 
6VU C23 C19 C 0 1 N N S -27.483 -35.946 -9.823  0.964  -1.997 0.703  C23 6VU 24 
6VU C25 C20 C 0 1 N N N -27.030 -37.343 -9.358  1.196  -1.801 2.204  C25 6VU 25 
6VU N26 N4  N 0 1 N N N -27.957 -37.907 -8.367  2.636  -1.835 2.486  N26 6VU 26 
6VU C27 C21 C 0 1 N N N -29.300 -38.054 -8.930  3.339  -0.747 1.793  C27 6VU 27 
6VU C30 C22 C 0 1 N N N -28.964 -35.950 -10.253 1.681  -0.885 -0.068 C30 6VU 28 
6VU C31 C23 C 0 1 N N N -31.272 -36.671 -9.560  3.875  0.216  -0.428 C31 6VU 29 
6VU O32 O3  O 0 1 N N N -31.534 -36.618 -10.749 3.254  1.200  -0.769 O32 6VU 30 
6VU N33 N5  N 0 1 N N N -32.303 -36.753 -8.677  5.196  0.131  -0.685 N33 6VU 31 
6VU C34 C24 C 0 1 N N N -32.145 -36.830 -7.202  5.926  1.262  -1.280 C34 6VU 32 
6VU C35 C25 C 0 1 N N N -32.884 -38.107 -6.759  7.172  1.534  -0.429 C35 6VU 33 
6VU O36 O4  O 0 1 N N N -34.246 -38.021 -7.205  7.906  0.318  -0.267 O36 6VU 34 
6VU C37 C26 C 0 1 N N N -34.406 -38.020 -8.632  7.194  -0.708 0.429  C37 6VU 35 
6VU C38 C27 C 0 1 N N N -33.699 -36.775 -9.193  5.951  -1.093 -0.373 C38 6VU 36 
6VU H1  H1  H 0 1 N N N -20.456 -33.807 -9.330  -3.028 4.337  1.163  H1  6VU 37 
6VU H2  H2  H 0 1 N N N -21.841 -34.352 -8.325  -1.341 3.771  1.209  H2  6VU 38 
6VU H3  H3  H 0 1 N N N -22.702 -35.518 -10.498 -3.539 2.672  -0.602 H3  6VU 39 
6VU H4  H4  H 0 1 N N N -21.516 -34.480 -11.360 -1.852 2.105  -0.555 H4  6VU 40 
6VU H5  H5  H 0 1 N N N -22.551 -32.458 -10.217 -2.128 1.481  1.829  H5  6VU 41 
6VU H6  H6  H 0 1 N N N -23.811 -33.544 -9.540  -3.814 2.048  1.782  H6  6VU 42 
6VU H7  H7  H 0 1 N N N -20.977 -31.634 -14.912 -8.035 0.408  0.016  H7  6VU 43 
6VU H8  H8  H 0 1 N N N -24.527 -35.841 -12.721 -1.747 -2.112 -1.884 H8  6VU 44 
6VU H9  H9  H 0 1 N N N -24.398 -37.407 -10.802 0.548  -4.120 -2.008 H9  6VU 45 
6VU H10 H10 H 0 1 N N N -25.182 -38.685 -11.791 0.040  -3.010 -3.303 H10 6VU 46 
6VU H11 H11 H 0 1 N N N -23.556 -38.071 -12.243 0.748  -2.363 -1.804 H11 6VU 47 
6VU H12 H12 H 0 1 N N N -24.425 -37.549 -14.550 -3.132 -4.157 -1.664 H12 6VU 48 
6VU H13 H13 H 0 1 N N N -26.088 -38.079 -14.122 -2.220 -4.165 -3.193 H13 6VU 49 
6VU H14 H14 H 0 1 N N N -25.807 -36.418 -14.746 -1.673 -5.163 -1.825 H14 6VU 50 
6VU H15 H15 H 0 1 N N N -29.708 -36.060 -8.224  3.602  -1.863 -0.031 H15 6VU 51 
6VU H16 H16 H 0 1 N N N -19.277 -35.990 -5.969  -0.292 6.658  -1.687 H16 6VU 52 
6VU H17 H17 H 0 1 N N N -20.734 -35.091 -6.514  -1.978 7.225  -1.734 H17 6VU 53 
6VU H18 H18 H 0 1 N N N -20.725 -36.887 -6.539  -0.814 7.985  -0.623 H18 6VU 54 
6VU H19 H19 H 0 1 N N N -21.364 -36.691 -8.826  -1.066 4.394  -1.175 H19 6VU 55 
6VU H20 H20 H 0 1 N N N -20.104 -36.225 -10.018 -2.753 4.961  -1.221 H20 6VU 56 
6VU H21 H21 H 0 1 N N N -24.996 -32.749 -15.833 -5.749 -3.067 -0.880 H21 6VU 57 
6VU H22 H22 H 0 1 N N N -22.812 -31.898 -16.530 -7.894 -1.911 -0.790 H22 6VU 58 
6VU H23 H23 H 0 1 N N N -21.303 -32.250 -12.540 -6.015 1.595  0.750  H23 6VU 59 
6VU H24 H24 H 0 1 N N N -27.050 -35.714 -12.986 -2.163 -3.181 0.360  H24 6VU 60 
6VU H25 H25 H 0 1 N N N -27.150 -37.215 -12.004 -0.603 -4.024 0.200  H25 6VU 61 
6VU H26 H26 H 0 1 N N N -27.375 -35.252 -8.976  1.359  -2.966 0.398  H26 6VU 62 
6VU H27 H27 H 0 1 N N N -26.987 -38.013 -10.229 0.788  -0.838 2.511  H27 6VU 63 
6VU H28 H28 H 0 1 N N N -26.030 -37.263 -8.907  0.699  -2.599 2.755  H28 6VU 64 
6VU H29 H29 H 0 1 N N N -27.623 -38.805 -8.080  2.811  -1.803 3.480  H29 6VU 65 
6VU H31 H31 H 0 1 N N N -29.955 -38.588 -8.226  4.399  -0.780 2.047  H31 6VU 66 
6VU H32 H32 H 0 1 N N N -29.259 -38.604 -9.882  2.921  0.211  2.103  H32 6VU 67 
6VU H33 H33 H 0 1 N N N -29.309 -34.915 -10.393 1.259  0.081  0.209  H33 6VU 68 
6VU H34 H34 H 0 1 N N N -29.071 -36.503 -11.198 1.555  -1.045 -1.139 H34 6VU 69 
6VU H35 H35 H 0 1 N N N -31.080 -36.893 -6.935  6.225  1.011  -2.298 H35 6VU 70 
6VU H36 H36 H 0 1 N N N -32.591 -35.946 -6.724  5.289  2.146  -1.290 H36 6VU 71 
6VU H37 H37 H 0 1 N N N -32.857 -38.190 -5.662  7.798  2.274  -0.927 H37 6VU 72 
6VU H38 H38 H 0 1 N N N -32.402 -38.989 -7.206  6.870  1.910  0.549  H38 6VU 73 
6VU H39 H39 H 0 1 N N N -35.476 -37.988 -8.887  7.837  -1.581 0.548  H39 6VU 74 
6VU H40 H40 H 0 1 N N N -33.955 -38.928 -9.058  6.893  -0.341 1.410  H40 6VU 75 
6VU H41 H41 H 0 1 N N N -34.230 -35.868 -8.867  5.329  -1.767 0.216  H41 6VU 76 
6VU H42 H42 H 0 1 N N N -33.688 -36.818 -10.292 6.252  -1.584 -1.298 H42 6VU 77 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
6VU C12 C11 DOUB Y N 1  
6VU C12 C13 SING Y N 2  
6VU C11 C10 SING Y N 3  
6VU C13 C14 DOUB Y N 4  
6VU C22 C20 SING N N 5  
6VU C10 N9  SING Y N 6  
6VU C10 C15 DOUB Y N 7  
6VU C14 C15 SING Y N 8  
6VU N9  C8  DOUB Y N 9  
6VU C15 N7  SING Y N 10 
6VU C20 C19 SING N N 11 
6VU C20 C21 SING N N 12 
6VU C19 N18 SING N N 13 
6VU C8  N7  SING Y N 14 
6VU C8  C16 SING N N 15 
6VU N7  C6  SING N N 16 
6VU N18 C16 SING N N 17 
6VU N18 C23 SING N N 18 
6VU C16 O17 DOUB N N 19 
6VU O32 C31 DOUB N N 20 
6VU C5  C6  SING N N 21 
6VU C5  C4  SING N N 22 
6VU C30 C23 SING N N 23 
6VU C30 C28 SING N N 24 
6VU C23 C25 SING N N 25 
6VU C31 C28 SING N N 26 
6VU C31 N33 SING N N 27 
6VU C25 N26 SING N N 28 
6VU C4  C3  SING N N 29 
6VU C38 N33 SING N N 30 
6VU C38 C37 SING N N 31 
6VU C28 C27 SING N N 32 
6VU C3  O2  SING N N 33 
6VU C27 N26 SING N N 34 
6VU N33 C34 SING N N 35 
6VU C37 O36 SING N N 36 
6VU O2  C1  SING N N 37 
6VU O36 C35 SING N N 38 
6VU C34 C35 SING N N 39 
6VU C4  H1  SING N N 40 
6VU C4  H2  SING N N 41 
6VU C5  H3  SING N N 42 
6VU C5  H4  SING N N 43 
6VU C6  H5  SING N N 44 
6VU C6  H6  SING N N 45 
6VU C13 H7  SING N N 46 
6VU C20 H8  SING N N 47 
6VU C21 H9  SING N N 48 
6VU C21 H10 SING N N 49 
6VU C21 H11 SING N N 50 
6VU C22 H12 SING N N 51 
6VU C22 H13 SING N N 52 
6VU C22 H14 SING N N 53 
6VU C28 H15 SING N N 54 
6VU C1  H16 SING N N 55 
6VU C1  H17 SING N N 56 
6VU C1  H18 SING N N 57 
6VU C3  H19 SING N N 58 
6VU C3  H20 SING N N 59 
6VU C11 H21 SING N N 60 
6VU C12 H22 SING N N 61 
6VU C14 H23 SING N N 62 
6VU C19 H24 SING N N 63 
6VU C19 H25 SING N N 64 
6VU C23 H26 SING N N 65 
6VU C25 H27 SING N N 66 
6VU C25 H28 SING N N 67 
6VU N26 H29 SING N N 68 
6VU C27 H31 SING N N 69 
6VU C27 H32 SING N N 70 
6VU C30 H33 SING N N 71 
6VU C30 H34 SING N N 72 
6VU C34 H35 SING N N 73 
6VU C34 H36 SING N N 74 
6VU C35 H37 SING N N 75 
6VU C35 H38 SING N N 76 
6VU C37 H39 SING N N 77 
6VU C37 H40 SING N N 78 
6VU C38 H41 SING N N 79 
6VU C38 H42 SING N N 80 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
6VU InChI            InChI                1.03  "InChI=1S/C27H41N5O4/c1-20(2)19-32(22-16-21(17-28-18-22)26(33)30-11-14-36-15-12-30)27(34)25-29-23-8-4-5-9-24(23)31(25)10-6-7-13-35-3/h4-5,8-9,20-22,28H,6-7,10-19H2,1-3H3/t21-,22+/m1/s1" 
6VU InChIKey         InChI                1.03  RHIBAIKQWJNESW-YADHBBJMSA-N                                                                                                                                                               
6VU SMILES_CANONICAL CACTVS               3.385 "COCCCCn1c2ccccc2nc1C(=O)N(CC(C)C)[C@@H]3CNC[C@@H](C3)C(=O)N4CCOCC4"                                                                                                                      
6VU SMILES           CACTVS               3.385 "COCCCCn1c2ccccc2nc1C(=O)N(CC(C)C)[CH]3CNC[CH](C3)C(=O)N4CCOCC4"                                                                                                                          
6VU SMILES_CANONICAL "OpenEye OEToolkits" 2.0.5 "CC(C)CN([C@H]1C[C@H](CNC1)C(=O)N2CCOCC2)C(=O)c3nc4ccccc4n3CCCCOC"                                                                                                                        
6VU SMILES           "OpenEye OEToolkits" 2.0.5 "CC(C)CN(C1CC(CNC1)C(=O)N2CCOCC2)C(=O)c3nc4ccccc4n3CCCCOC"                                                                                                                                
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
6VU "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.5 "1-(4-methoxybutyl)-~{N}-(2-methylpropyl)-~{N}-[(3~{S},5~{R})-5-morpholin-4-ylcarbonylpiperidin-3-yl]benzimidazole-2-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
6VU "Create component" 2016-07-06 RCSB 
6VU "Initial release"  2017-07-05 RCSB 
# 
