data_6FU
# 
_chem_comp.id                                    6FU 
_chem_comp.name                                  "2'-trifluoromethylthio-2'-deoxyuridine" 
_chem_comp.type                                  "RNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C10 H14 F3 N2 O8 P S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2013-11-20 
_chem_comp.pdbx_modified_date                    2014-11-14 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        410.261 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     6FU 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4NMG 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
6FU P     P     P 0 1 N N N 0.619  44.982 -16.204 5.060  -0.017 0.150  P     6FU 1  
6FU OP1   OP1   O 0 1 N N N 1.800  44.728 -17.068 5.746  -0.209 -1.416 OP1   6FU 2  
6FU OP2   OP2   O 0 1 N N N -0.028 43.821 -15.545 6.636  -0.009 0.839  OP2   6FU 3  
6FU "O5'" "O5'" O 0 1 N N N 0.926  45.971 -15.030 3.484  -0.025 -0.539 "O5'" 6FU 4  
6FU "C5'" "C5'" C 0 1 N N N 1.665  47.188 -15.238 2.508  0.676  0.235  "C5'" 6FU 5  
6FU "C4'" "C4'" C 0 1 N N R 1.197  48.235 -14.251 1.160  0.634  -0.486 "C4'" 6FU 6  
6FU "O4'" "O4'" O 0 1 N N N -0.089 48.654 -14.685 0.620  -0.705 -0.465 "O4'" 6FU 7  
6FU "C3'" "C3'" C 0 1 N N R 1.023  47.753 -12.854 0.119  1.491  0.268  "C3'" 6FU 8  
6FU "O3'" "O3'" O 0 1 N N N 2.258  47.866 -12.128 -0.005 2.778  -0.341 "O3'" 6FU 9  
6FU "C2'" "C2'" C 0 1 N N R -0.040 48.632 -12.362 -1.197 0.696  0.125  "C2'" 6FU 10 
6FU "S2'" "S2'" S 0 1 N N N 0.642  50.276 -11.843 -2.438 1.675  -0.765 "S2'" 6FU 11 
6FU "C7'" "C7'" C 0 1 N N N -0.735 51.059 -10.984 -2.779 3.040  0.380  "C7'" 6FU 12 
6FU "F1'" "F1'" F 0 1 N N N -1.798 51.390 -11.798 -3.736 3.892  -0.182 "F1'" 6FU 13 
6FU "F2'" "F2'" F 0 1 N N N -1.272 50.288 -10.003 -3.265 2.526  1.588  "F2'" 6FU 14 
6FU "F3'" "F3'" F 0 1 N N N -0.315 52.182 -10.406 -1.600 3.754  0.618  "F3'" 6FU 15 
6FU "C1'" "C1'" C 0 1 N N R -0.957 48.804 -13.517 -0.797 -0.548 -0.699 "C1'" 6FU 16 
6FU N1    N1    N 0 1 N N N -2.074 47.883 -13.609 -1.526 -1.729 -0.227 N1    6FU 17 
6FU C2    C2    C 0 1 N N N -3.048 47.952 -12.664 -2.360 -2.375 -1.062 C2    6FU 18 
6FU O2    O2    O 0 1 N N N -2.870 48.666 -11.658 -2.499 -1.971 -2.201 O2    6FU 19 
6FU N3    N3    N 0 1 N N N -4.131 47.186 -12.768 -3.041 -3.461 -0.655 N3    6FU 20 
6FU C4    C4    C 0 1 N N N -4.365 46.446 -13.852 -2.898 -3.922 0.604  C4    6FU 21 
6FU O4    O4    O 0 1 N N N -5.477 45.707 -13.852 -3.514 -4.905 0.973  O4    6FU 22 
6FU C5    C5    C 0 1 N N N -3.455 46.409 -14.918 -2.023 -3.251 1.493  C5    6FU 23 
6FU C6    C6    C 0 1 N N N -2.275 47.163 -14.740 -1.347 -2.167 1.057  C6    6FU 24 
6FU H1    H1    H 0 1 N N N 2.114  45.550 -17.425 6.712  -0.248 -1.420 H1    6FU 25 
6FU H2    H2    H 0 1 N N N -0.765 44.121 -15.026 7.203  0.703  0.515  H2    6FU 26 
6FU H3    H3    H 0 1 N N N 2.738  46.996 -15.088 2.412  0.205  1.213  H3    6FU 27 
6FU H4    H4    H 0 1 N N N 1.497  47.549 -16.263 2.821  1.713  0.360  H4    6FU 28 
6FU H5    H5    H 0 1 N N N 1.900  49.081 -14.262 1.268  0.985  -1.513 H5    6FU 29 
6FU H6    H6    H 0 1 N N N 0.676  46.709 -12.862 0.394  1.589  1.318  H6    6FU 30 
6FU H7    H7    H 0 1 N N N 2.133  47.555 -11.239 0.811  3.297  -0.333 H7    6FU 31 
6FU H8    H8    H 0 1 N N N -0.558 48.205 -11.491 -1.575 0.402  1.105  H8    6FU 32 
6FU H9    H9    H 0 1 N N N -1.347 49.832 -13.499 -0.990 -0.380 -1.758 H9    6FU 33 
6FU H10   H10   H 0 1 N N N -4.787 47.165 -12.013 -3.639 -3.915 -1.270 H10   6FU 34 
6FU H11   H11   H 0 1 N N N -3.644 45.841 -15.817 -1.892 -3.608 2.504  H11   6FU 35 
6FU H12   H12   H 0 1 N N N -1.523 47.166 -15.515 -0.675 -1.643 1.721  H12   6FU 36 
6FU OP3   OP3   O 0 1 N Y N ?      ?      ?       4.657  -1.402 1.088  OP3   6FU 37 
6FU H13   H13   H 0 1 N N N ?      ?      ?       4.819  1.330  0.687  H13   6FU 38 
6FU H14   H14   H 0 1 N N N ?      ?      ?       4.486  -2.196 0.563  H14   6FU 39 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
6FU OP1   P     SING N N 1  
6FU P     OP2   SING N N 2  
6FU P     "O5'" SING N N 3  
6FU "C5'" "O5'" SING N N 4  
6FU "C5'" "C4'" SING N N 5  
6FU C5    C6    DOUB N N 6  
6FU C5    C4    SING N N 7  
6FU C6    N1    SING N N 8  
6FU "O4'" "C4'" SING N N 9  
6FU "O4'" "C1'" SING N N 10 
6FU "C4'" "C3'" SING N N 11 
6FU O4    C4    DOUB N N 12 
6FU C4    N3    SING N N 13 
6FU N1    "C1'" SING N N 14 
6FU N1    C2    SING N N 15 
6FU "C1'" "C2'" SING N N 16 
6FU "C3'" "C2'" SING N N 17 
6FU "C3'" "O3'" SING N N 18 
6FU N3    C2    SING N N 19 
6FU C2    O2    DOUB N N 20 
6FU "C2'" "S2'" SING N N 21 
6FU "S2'" "C7'" SING N N 22 
6FU "F1'" "C7'" SING N N 23 
6FU "C7'" "F3'" SING N N 24 
6FU "C7'" "F2'" SING N N 25 
6FU OP1   H1    SING N N 26 
6FU OP2   H2    SING N N 27 
6FU "C5'" H3    SING N N 28 
6FU "C5'" H4    SING N N 29 
6FU "C4'" H5    SING N N 30 
6FU "C3'" H6    SING N N 31 
6FU "O3'" H7    SING N N 32 
6FU "C2'" H8    SING N N 33 
6FU "C1'" H9    SING N N 34 
6FU N3    H10   SING N N 35 
6FU C5    H11   SING N N 36 
6FU C6    H12   SING N N 37 
6FU P     OP3   SING N N 38 
6FU P     H13   SING N N 39 
6FU OP3   H14   SING N N 40 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
6FU SMILES           ACDLabs              12.01 "FC(F)(F)SC2C(O)C(OC2N1C(=O)NC(=O)C=C1)COP(O)(O)O"                                                                                                            
6FU InChI            InChI                1.03  "InChI=1S/C10H14F3N2O8PS/c11-10(12,13)25-7-6(17)4(3-22-24(19,20)21)23-8(7)15-2-1-5(16)14-9(15)18/h1-2,4,6-8,17,19-21,24H,3H2,(H,14,16,18)/t4-,6-,7-,8-/m1/s1" 
6FU InChIKey         InChI                1.03  HQACHJYAMJCNIP-XVFCMESISA-N                                                                                                                                   
6FU SMILES_CANONICAL CACTVS               3.385 "O[C@@H]1[C@@H](CO[PH](O)(O)O)O[C@H]([C@@H]1SC(F)(F)F)N2C=CC(=O)NC2=O"                                                                                        
6FU SMILES           CACTVS               3.385 "O[CH]1[CH](CO[PH](O)(O)O)O[CH]([CH]1SC(F)(F)F)N2C=CC(=O)NC2=O"                                                                                               
6FU SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(O)(O)O)O)SC(F)(F)F"                                                                                        
6FU SMILES           "OpenEye OEToolkits" 1.7.6 "C1=CN(C(=O)NC1=O)C2C(C(C(O2)COP(O)(O)O)O)SC(F)(F)F"                                                                                                          
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
6FU "SYSTEMATIC NAME" ACDLabs              12.01 "2'-thio-2'-S-(trifluoromethyl)-5'-O-(trihydroxy-lambda~5~-phosphanyl)uridine"                                                            
6FU "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "1-[(2R,3R,4R,5R)-4-oxidanyl-3-(trifluoromethylsulfanyl)-5-[[tris(oxidanyl)-$l^{5}-phosphanyl]oxymethyl]oxolan-2-yl]pyrimidine-2,4-dione" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
6FU "Create component" 2013-11-20 RCSB 
6FU "Initial release"  2014-11-19 RCSB 
# 
