data_56U
# 
_chem_comp.id                                    56U 
_chem_comp.name                                  "2-(difluoromethyl)-1H-benzimidazole" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C8 H6 F2 N2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2015-08-06 
_chem_comp.pdbx_modified_date                    2016-07-29 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        168.143 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     56U 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5CY7 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
56U C1  C1 C 0 1 Y N N 6.310 -14.516 -2.650 2.235  -1.378 -0.042 C1  56U 1  
56U C2  C2 C 0 1 Y N N 5.120 -14.135 -1.998 1.023  -0.710 0.059  C2  56U 2  
56U C3  C3 C 0 1 Y N N 4.816 -14.571 -0.581 0.998  0.695  0.067  C3  56U 3  
56U C4  C4 C 0 1 Y N N 5.753 -15.365 0.094  2.198  1.405  -0.026 C4  56U 4  
56U C5  C5 C 0 1 Y N N 6.923 -15.698 -0.609 3.382  0.730  -0.125 C5  56U 5  
56U F12 F1 F 0 1 N N N 0.869 -13.539 -1.688 -3.066 1.173  -0.268 F12 56U 6  
56U C10 C6 C 0 1 N N N 1.842 -12.609 -1.424 -2.560 0.023  0.348  C10 56U 7  
56U F11 F2 F 0 1 N N N 1.830 -11.692 -2.446 -3.089 -1.111 -0.277 F11 56U 8  
56U C8  C7 C 0 1 Y N N 3.140 -13.330 -1.340 -1.058 0.008  0.228  C8  56U 9  
56U N7  N1 N 0 1 Y N N 4.037 -13.391 -2.365 -0.293 -1.115 0.162  N7  56U 10 
56U N9  N2 N 0 1 Y N N 3.602 -14.047 -0.272 -0.304 1.067  0.173  N9  56U 11 
56U C6  C8 C 0 1 Y N N 7.211 -15.291 -1.932 3.407  -0.658 -0.133 C6  56U 12 
56U H1  H1 H 0 1 N N N 6.513 -14.217 -3.668 2.260  -2.458 -0.044 H1  56U 13 
56U H2  H2 H 0 1 N N N 5.584 -15.704 1.105  2.189  2.484  -0.021 H2  56U 14 
56U H3  H3 H 0 1 N N N 7.655 -16.309 -0.102 4.307  1.281  -0.197 H3  56U 15 
56U H4  H4 H 0 1 N N N 1.649 -12.113 -0.461 -2.841 0.022  1.401  H4  56U 16 
56U H5  H5 H 0 1 N N N 3.918 -12.954 -3.256 -0.613 -2.030 0.184  H5  56U 17 
56U H7  H7 H 0 1 N N N 8.143 -15.587 -2.390 4.351  -1.176 -0.211 H7  56U 18 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
56U C1  C2  DOUB Y N 1  
56U C1  C6  SING Y N 2  
56U F11 C10 SING N N 3  
56U N7  C2  SING Y N 4  
56U N7  C8  SING Y N 5  
56U C2  C3  SING Y N 6  
56U C6  C5  DOUB Y N 7  
56U F12 C10 SING N N 8  
56U C10 C8  SING N N 9  
56U C8  N9  DOUB Y N 10 
56U C5  C4  SING Y N 11 
56U C3  N9  SING Y N 12 
56U C3  C4  DOUB Y N 13 
56U C1  H1  SING N N 14 
56U C4  H2  SING N N 15 
56U C5  H3  SING N N 16 
56U C10 H4  SING N N 17 
56U N7  H5  SING N N 18 
56U C6  H7  SING N N 19 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
56U SMILES           ACDLabs              12.01 "c2c1c(nc(C(F)F)n1)ccc2"                                              
56U InChI            InChI                1.03  "InChI=1S/C8H6F2N2/c9-7(10)8-11-5-3-1-2-4-6(5)12-8/h1-4,7H,(H,11,12)" 
56U InChIKey         InChI                1.03  PURNIHSRWGYONZ-UHFFFAOYSA-N                                           
56U SMILES_CANONICAL CACTVS               3.385 "FC(F)c1[nH]c2ccccc2n1"                                               
56U SMILES           CACTVS               3.385 "FC(F)c1[nH]c2ccccc2n1"                                               
56U SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "c1ccc2c(c1)[nH]c(n2)C(F)F"                                           
56U SMILES           "OpenEye OEToolkits" 1.9.2 "c1ccc2c(c1)[nH]c(n2)C(F)F"                                           
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
56U "SYSTEMATIC NAME" ACDLabs              12.01 "2-(difluoromethyl)-1H-benzimidazole"       
56U "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "2-[bis(fluoranyl)methyl]-1H-benzimidazole" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
56U "Create component" 2015-08-06 PDBJ 
56U "Initial release"  2016-08-03 RCSB 
# 
